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xiaobeizhao's no-tag [28 articles]

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  • Dynamic usage of transcription start sites within core promoters
    Genome Biology, Vol. 7 (12 December 2006), R118.
    by Hideya Kawaji, Martin C Frith, Shintaro Katayama, Albin Sandelin, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki
    posted to no-tag by xiaobeizhao on 2008-08-12 04:45:18 as ** along with 3 people and 1 group myrtilus icases gjuggler TNT
  • Tag-based approaches for transcriptome research and genome annotation
    Nature Methods, Vol. 2, No. 7. (2005), pp. 495-502.
    by Matthias Harbers, Piero Carninci
    posted to no-tag by xiaobeizhao on 2008-08-12 02:20:29 as ** along with 3 people bertelsen jyuh gpappas
  • The biology of eukaryotic promoter prediction--a review.
    Computers & chemistry, Vol. 23, No. 3-4. (15 June 1999), pp. 191-207.
    by AG Pedersen, P Baldi, Y Chauvin, S Brunak
    posted to no-tag by xiaobeizhao on 2008-08-11 09:54:15 as ** along with 1 person marti
  • The RNA polymerase II core promoter.
    Annu Rev Biochem, Vol. 72 (2003), pp. 449-479.
    by ST Smale, JT Kadonaga
    posted to no-tag by xiaobeizhao on 2008-08-07 10:40:08 as ** along with 3 people myrtilus maximilianh yoanjacquemin
  • Finding Groups in Data: An Introduction to Cluster Analysis (Wiley Series in Probability and Statistics)
    (25 March 2005)
    by Leonard Kaufman, Peter J Rousseeuw
    posted to no-tag by xiaobeizhao on 2008-08-06 15:06:08 as ** along with 5 people and 1 group sdvillal abrentnall theodora robertlischke quianominorleo QFRMC_ConsumerCredit
  • Density Estimation for Statistics and Data Analysis
    (01 April 1986)
    by BW Silverman
    posted to no-tag by xiaobeizhao on 2008-08-06 05:17:38 as ** along with 6 people and 1 group yaroslavvb alexr rpadams balajis dgront shimazaki Autoregulation
  • Transcriptional and structural impact of TATA-initiation site spacing in mammalian core promoters
    Genome Biology, Vol. 7 (17 August 2006), R78.
    by Jasmina Ponjavic, Boris Lenhard, Chikatoshi Kai, Jun Kawai, Piero Carninci, Yoshihide Hayashizaki, Albin Sandelin
    posted to no-tag by xiaobeizhao on 2008-08-05 07:15:28 as ** along with 1 person debasis
  • Biological Sequence Analysis : Probabilistic Models of Proteins and Nucleic Acids
    (01 July 1999)
    by Richard Durbin, Sean R Eddy, Anders Krogh, Graeme Mitchison
    posted to no-tag by xiaobeizhao on 2008-08-01 17:57:16 as ** along with 11 people and 1 group derek_farn stanley ujh pcahan1 balajis indigoviolet moborg emranmohdtamil dullhunk rabio wenhan EisenLab
  • An Introduction to Genetic Analysis
    (2000)
    by Anthony JF Griffiths, Jeffrey H Miller, David T Suzuki, Richard C Lewontin, William M Gelbart
    posted to no-tag by xiaobeizhao on 2008-07-30 01:40:08 as **
  • Biochemistry
    (2002)
    by Jeremy M Berg, John L Tymoczko, Lubert Stryer
    posted to no-tag by xiaobeizhao on 2008-07-30 00:41:36 as **
  • Transcript annotation in FANTOM3: mouse gene catalog based on physical cDNAs.
    PLoS Genet, Vol. 2, No. 4. (April 2006)
    by N Maeda, T Kasukawa, R Oyama, J Gough, M Frith, PG Engström, B Lenhard, RN Aturaliya, S Batalov, KW Beisel, CJ Bult, CF Fletcher, AR Forrest, M Furuno, D Hill, M Itoh, M Kanamori-Katayama, S Katayama, M Katoh, T Kawashima, J Quackenbush, T Ravasi, BZ Ring, K Shibata, K Sugiura, Y Takenaka, RD Teasdale, CA Wells, Y Zhu, C Kai, J Kawai, DA Hume, P Carninci, Y Hayashizaki
    posted to no-tag by xiaobeizhao on 2008-07-29 22:02:09 as ** along with 1 person raylim
  • Tissue-specific functions based on information content of gene ontology using cap analysis gene expression.
    Medical & biological engineering & computing, Vol. 45, No. 11. (November 2007), pp. 1029-1036.
    by S Maekawa, A Matsumoto, Y Takenaka, H Matsuda
    posted to no-tag by xiaobeizhao on 2008-07-12 12:02:15 as ***** along with 1 person jyuh
  • Serial analysis of gene expression.
    Science, Vol. 270, No. 5235. (20 October 1995), pp. 484-487.
    by VE Velculescu, L Zhang, B Vogelstein, KW Kinzler
    posted to no-tag by xiaobeizhao on 2008-05-13 11:15:30 as ***** along with 6 people and 1 group gurkanbebek jeremymiller epigenetics elzodw bertelsen bozdagd GeschwindLab
  • CAGE Basic/Analysis Databases: the CAGE resource for comprehensive promoter analysis.
    Nucleic Acids Res, Vol. 34, No. Database issue. (1 January 2006)
    by H Kawaji, T Kasukawa, S Fukuda, S Katayama, C Kai, J Kawai, P Carninci, Y Hayashizaki
    posted to no-tag by xiaobeizhao on 2008-05-13 11:05:12 as ** along with 7 people bertelsen myrtilus troels_marstrand olympos kkishore12 gjuggler jyuh
  • Functional Demarcation of Active and Silent Chromatin Domains in Human HOX Loci by Noncoding RNAs.
    Cell, Vol. 129, No. 7. (29 June 2007), pp. 1311-1323.
    by JL Rinn, M Kertesz, JK Wang, SL Squazzo, X Xu, SA Brugmann, LH Goodnough, JA Helms, PJ Farnham, E Segal, HY Chang
    posted to no-tag by xiaobeizhao on 2008-03-08 22:38:57 as ** along with 5 people and 1 group kentsis andersbj mtagaya jasonflannick bpcusack microRNA
  • Analysis of epigenetic modifications of chromatin at specific gene loci by native chromatin immunoprecipitation of nucleosomes isolated using hydroxyapatite chromatography
    Nat. Protocols, Vol. 3, No. 3. (March 2008), pp. 398-409.
    by Marjorie Brand, Shravanti Rampalli, Chandra-Prakash Chaturvedi, Jeffrey F Dilworth
    posted to no-tag by xiaobeizhao on 2008-03-08 21:58:17 as **
  • Comprehensive analysis of transcriptional promoter structure and function in 1% of the human genome.
    Genome Res, Vol. 16, No. 1. (January 2006), pp. 1-10.
    by SJ Cooper, ND Trinklein, ED Anton, L Nguyen, RM Myers
    posted to no-tag by xiaobeizhao on 2007-11-17 22:32:50 as ** along with 2 people troels_marstrand olympos
  • Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage.
    Proc Natl Acad Sci U S A, Vol. 100, No. 26. (23 December 2003), pp. 15776-15781.
    by T Shiraki, S Kondo, S Katayama, K Waki, T Kasukawa, H Kawaji, R Kodzius, A Watahiki, M Nakamura, T Arakawa, S Fukuda, D Sasaki, A Podhajska, M Harbers, J Kawai, P Carninci, Y Hayashizaki
    posted to no-tag by xiaobeizhao on 2007-11-17 01:39:02 as ** along with 8 people myrtilus bertelsen setar troels_marstrand olympos gjuggler antonkratz jyuh
  • Applied bioinformatics for the identification of regulatory elements.
    Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 276-287.
    by WW Wasserman, A Sandelin
    posted to no-tag by xiaobeizhao on 2007-11-17 01:03:33 as ** along with 16 people and 8 groups icases ana chad_davis moborg gpalidwor dchughes nickluscombe johncumbers giovanni bertelsen Stew nklee jdiezperezj ArtemPankin mariakmejia isimpson structural_bioinformatics Bioinformatics EisenLab G4ID EBI-regulation GeschwindLab TNT Genetics-of-Gambling
  • Promoter classifier: software package for promoter database analysis.
    Appl Bioinformatics, Vol. 4, No. 3. (2005), pp. 205-209.
    by NI Gershenzon, IP Ioshikhes
    posted to no-tag by xiaobeizhao on 2007-11-16 22:01:00 as **
  • CAGE: cap analysis of gene expression
    Nature Methods, Vol. 3, No. 3. (2006), pp. 211-222.
    by Rimantas Kodzius, Miki Kojima, Hiromi Nishiyori, Mari Nakamura, Shiro Fukuda, Michihira Tagami, Daisuke Sasaki, Kengo Imamura, Chikatoshi Kai, Matthias Harbers, Yoshihide Hayashizaki, Piero Carninci
    posted to no-tag by xiaobeizhao on 2007-11-16 16:37:20 as ** along with 1 person jyuh
  • Demystified ...: Transcription
    Mol Pathol, Vol. 53, No. 1. (1 February 2000), pp. 1-7.
    by WM Macfarlane
    posted to no-tag by xiaobeizhao on 2007-11-16 15:49:58 as **
  • Weight matrix descriptions of four eukaryotic RNA polymerase II promoter elements derived from 502 unrelated promoter sequences.
    J Mol Biol, Vol. 212, No. 4. (20 April 1990), pp. 563-578.
    by P Bucher
    posted to no-tag by xiaobeizhao on 2007-11-16 14:54:49 as ** along with 1 person troels_marstrand
  • Analysis of E. coli promoter sequences.
    Nucleic Acids Res, Vol. 15, No. 5. (11 March 1987), pp. 2343-2361.
    by CB Harley, RP Reynolds
    posted to no-tag by xiaobeizhao on 2007-11-16 14:54:26 as ** along with 1 person mrzjh2
  • Mammalian RNA polymerase II core promoters: insights from genome-wide studies
    Nature Reviews Genetics, Vol. 8, No. 6. (08 May 2007), pp. 424-436.
    by Albin Sandelin, Piero Carninci, Boris Lenhard, Jasmina Ponjavic, Yoshihide Hayashizaki, David A Hume
    posted to no-tag by xiaobeizhao on 2007-11-15 22:25:24 as ** along with 8 people and 3 groups Lauren_Jones agustinarce dchughes zwang cabbagezs cisevol GeeSharpMinor idonaldson G4ID Genetics-of-Gambling cis-regulatory-evolution
  • Genome-wide analysis of mammalian promoter architecture and evolution
    Nature Genetics, Vol. 38, No. 6. (28 April 2006), pp. 626-635.
    by Piero Carninci, Albin Sandelin, Boris Lenhard, Shintaro Katayama, Kazuro Shimokawa, Jasmina Ponjavic, Colin AM Semple, Martin S Taylor, Pär G Engström, Martin C Frith, Alistair RR Forrest, Wynand B Alkema, Sin L Tan, Charles Plessy, Rimantas Kodzius, Timothy Ravasi, Takeya Kasukawa, Shiro Fukuda, Mutsumi Kanamori-Katayama, Yayoi Kitazume, Hideya Kawaji, Chikatoshi Kai, Mari Nakamura, Hideaki Konno, Kenji Nakano, Salim Mottagui-Tabar, Peter Arner, Alessandra Chesi, Stefano Gustincich, Francesca Persichetti, Harukazu Suzuki, Sean M Grimmond, Christine A Wells, Valerio Orlando, Claes Wahlestedt, Edison T Liu, Matthias Harbers, Jun Kawai, Vladimir B Bajic, David A Hume, Yoshihide Hayashizaki
    posted to no-tag by xiaobeizhao on 2007-11-15 21:29:20 as ** along with 12 people and 4 groups djkt jfr xwbcn dchughes tabu samal nickluscombe cisevol eviledv gjuggler jasonflannick antonkratz G4ID EBI-regulation Genetics-of-Gambling cis-regulatory-evolution
  • Trans-splicing and polycistronic transcription in Caenorhabditis elegans.
    Trends Genet, Vol. 11, No. 4. (April 1995), pp. 132-136.
    by T Blumenthal
    posted to no-tag by xiaobeizhao on 2006-12-14 05:04:33 as ** along with 1 person and 1 group tharris C. elegans / WormBase
  • A conserved sequence motif in 3' untranslated regions of ribosomal protein mRNAs in nematodes
    RNA, Vol. 12, No. 10. (1 October 2006), pp. 1786-1789.
    by Ashwin Hajarnavis, Richard Durbin
    posted to no-tag by xiaobeizhao on 2006-12-14 04:39:58 as ** along with 1 person and 1 group tharris C. elegans / WormBase
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