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wrowell's 关注列表 [768 articles]

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  • Seeder: Discriminative Seeding DNA Motif Discovery.
    Bioinformatics (Oxford, England) (21 August 2008)
    by François Fauteux, Mathieu Blanchette, Martina V V Strömvik
    posted to motif_finding by brant on 2008-09-11 22:20:22 as ** along with 4 people nuin maximilianh isimpson idonaldson
  • The Regulation and Evolution of a Genetic Switch Controlling Sexually Dimorphic Traits in Drosophila
    Cell, Vol. 134, No. 4. (22 August 2008), pp. 610-623.
    by Thomas M Williams, Jane E Selegue, Thomas Werner, Nicolas Gompel, Artyom Kopp, Sean B Carroll
    posted to sexual_dimorphism evo-devo carroll by brant on 2008-09-11 22:19:27 as ** along with 2 people emptyhb caseybrown
  • Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology
    Nucl. Acids Res. (27 August 2008), gkn502.
    by Richard Cronn, Aaron Liston, Matthew Parks, David S Gernandt, Rongkun Shen, Todd Mockler
    posted to solexa multiplex bias by brant on 2008-09-10 23:31:10 as ** along with 6 people reyez mlog pdexheimer abizar ojabado aconesa
  • Intron length increases oscillatory periods of gene expression in animal cells.
    Genes & development (14 August 2008)
    by Ian A A Swinburne, David G G Miguez, Dirk Landgraf, Pamela A A Silver
    posted to intron expression by brant on 2008-09-10 23:27:40 as ** along with 1 person and 1 group stajich Berkeley Mycology
  • Turnover of binding sites for transcription factors involved in early Drosophila development
    Gene, Vol. 310 (22 May 2003), pp. 215-220.
    by Javier Costas, Fernando Casares, Jorge Vieira
    posted to binding binding_site site turnover by brant on 2008-08-04 15:20:55 as **
  • Understanding quantitative genetic variation.
    Nat Rev Genet, Vol. 3, No. 1. (January 2002), pp. 11-21.
    by NH Barton, PD Keightley
    posted to qtl review rockman_journal_club by dpollard on 2008-07-22 20:41:43 as read along with 2 people and 2 groups stevanspringer ryang FAB-lab RockmanLab
  • Independent effects of cis- and trans-regulatory variation on gene expression in Drosophila melanogaster
    Genetics (3 February 2008), genetics.107.082032.
    by Patricia J Wittkopp, Belinda K Haerum, Andrew G Clark
    posted to cis_vs_trans epistasis regulatory_polymorphism rockman_journal_club by dpollard on 2008-07-07 22:41:18 as read along with 5 people and 3 groups brant djkt stajich mimulus_99 caseybrown EisenLab cis-regulatory-evolution RockmanLab
  • A genome-wide approach to identifying novel-imprinted genes.
    Hum Genet, Vol. 122, No. 6. (January 2008), pp. 625-634.
    by KS Pollard, D Serre, X Wang, H Tao, E Grundberg, TJ Hudson, AG Clark, K Frazer
    posted to allele-specific array expression method rockman_journal_club by dpollard on 2008-06-27 21:03:45 as ***** along with 2 people and 1 group nolodie gjuggler RockmanLab
  • Genome-wide allele-specific expression analysis using Massively Parallel Signature Sequencing (MPSS) reveals cis- and trans-effects on gene expression in maize hybrid meristem tissue.
    Plant molecular biology, Vol. 66, No. 5. (March 2008), pp. 551-563.
    by M Guo, S Yang, M Rupe, B Hu, DR Bickel, L Arthur, O Smith
    posted to allele-specific expression massively_parallel_signature_sequencing method rockman_journal_club by dpollard on 2008-06-27 21:00:03 as ***** along with 1 person and 1 group caseybrown RockmanLab
  • Allele-Specific KRT1 Expression Is a Complex Trait
    PLoS Genetics, Vol. 2, No. 6. (1 June 2006), e93.
    by Heng Tao, David R Cox, Kelly A Frazer
    posted to allele-specific complex_trait expression by dpollard on 2008-06-27 20:56:07 as ** along with 4 people and 1 group ccots RMGraze emarker mimulus_99 RockmanLab
  • Analysis of allelic differential expression in human white blood cells
    Genome Res., Vol. 16, No. 3. (1 March 2006), pp. 331-339.
    by Krishna PV Pant, Heng Tao, Erica J Beilharz, Dennis G Ballinger, David R Cox, Kelly A Frazer
    posted to allele-specific array expression method rockman_journal_club by dpollard on 2008-06-27 20:54:12 as ***** along with 4 people and 1 group RMGraze qfwills emarker mimulus_99 RockmanLab
  • SNP-specific array-based allele-specific expression analysis.
    Genome Res (27 March 2008)
    by Hans T T Bjornsson, Thomas J J Albert, Christine M M Ladd-Acosta, Roland D D Green, Michael A A Rongione, Christina M M Middle, Rafael A A Irizarry, Karl W W Broman, Andrew P P Feinberg
    posted to allele-specific array expression method rockman_journal_club by dpollard on 2008-06-27 20:50:13 as ***** along with 2 people and 1 group jyuh rschulz RockmanLab
  • Allelic Variation in Gene Expression Is Common in the Human Genome
    Genome Res., Vol. 13, No. 8. (1 August 2003), pp. 1855-1862.
    by Shuen H Lo, Zhining Wang, Ying Hu, Howard H Yang, Sheryl Gere, Kenneth H Buetow, Maxwell P Lee
    posted to affy_array allele-specific expression method rockman_journal_club by dpollard on 2008-06-27 20:44:16 as ***** along with 4 people and 1 group RMGraze qfwills emarker mimulus_99 RockmanLab
  • Allele-Specific Chromatin Immunoprecipitation Studies Show Genetic Influence on Chromatin State in Human Genome
    PLoS Genetics, Vol. 3, No. 5. (1 May 2007), e81.
    by Mitsutaka Kadota, Howard H Yang, Nan Hu, Chaoyu Wang, Ying Hu, Philip R Taylor, Kenneth H Buetow, Maxwell P Lee
    posted to allele-specific chip_chip method by dpollard on 2008-06-27 20:41:19 as ** along with 1 group RockmanLab
  • Differential Allelic Expression in the Human Genome: A Robust Approach To Identify Genetic and Epigenetic Cis-Acting Mechanisms Regulating Gene Expression
    PLoS Genet, Vol. 4, No. 2. (29 February 2008), e1000006.
    by David Serre, Scott Gurd, Bing Ge, Robert Sladek, Donna Sinnett, Eef Harmsen, Marina Bibikova, Eugene Chudin, David L Barker, Todd Dickinson, Jian-Bing Fan, Thomas J Hudson
    posted to allele-specific expression illumina_beads method rockman_journal_club by dpollard on 2008-06-27 20:36:21 as ***** along with 3 people and 2 groups jyuh vplagnol caseybrown cis-regulatory-evolution RockmanLab
  • The lepidopteran transposon vector, piggyBac, mediates germ-line transformation in the Mediterranean fruit fly.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 95, No. 13. (23 June 1998), pp. 7520-7525.
    by AM Handler, SD McCombs, MJ Fraser, SH Saul
    posted to tephritid transposons by brant on 2008-06-11 19:47:53 as **
  • Medfly transposable elements: diversity, evolution, genomic impact and possible applications.
    Insect biochemistry and molecular biology, Vol. 34, No. 2. (February 2004), pp. 139-148.
    by LM Gomulski, C Torti, V Murelli, M Bonizzoni, G Gasperi, AR Malacrida
    posted to tephritid transposons by brant on 2008-06-11 19:46:22 as ** along with 1 person operon
  • Inferences on the population structure and colonization process of the invasive oriental fruit fly, Bactrocera dorsalis (Hendel)
    Molecular Ecology, Vol. 16, No. 17. (September 2007), pp. 3522-3532.
    by N Aketarawong, M Bonizzoni, S Thanaphum, LM Gomulski, G Gasperi, AR Malacrida, CR Gugliemino
    posted to colonization population structure tephritid by brant on 2008-06-11 19:45:43 as **
  • Bactrocera tryoni and closely related pest tephritids--molecular analysis and prospects for transgenic control strategies
    Insect Biochemistry and Molecular Biology, Vol. 34, No. 2. (February 2004), pp. 167-176.
    by Kathryn A Raphael, Steven Whyard, Deborah Shearman, Xin An, Marianne Frommer
    posted to review tephritid transgenic by brant on 2008-06-11 02:31:18 as **
  • DEPS-1 promotes P-granule assembly and RNA interference in C. elegans germ cells.
    Development (Cambridge, England), Vol. 135, No. 5. (March 2008), pp. 983-993.
    by CA Spike, J Bader, V Reinke, S Strome
    posted to c_elegans germline rnai small_rnas by dpollard on 2008-06-02 21:42:42 as ** along with 1 person and 2 groups tharris C. elegans / WormBase RockmanLab
  • Molecular biology. Amplified silencing.
    Science, Vol. 315, No. 5809. (12 January 2007), pp. 199-200.
    by DC Baulcombe
    posted to c_elegans review rnai small_rnas by dpollard on 2008-06-02 21:20:12 as ** along with 1 person and 1 group tardigrade RockmanLab
  • Distinct populations of primary and secondary effectors during RNAi in C. elegans.
    Science, Vol. 315, No. 5809. (12 January 2007), pp. 241-244.
    by J Pak, A Fire
    posted to c_elegans rnai small_rnas by dpollard on 2008-06-02 21:17:39 as ** along with 2 people and 2 groups tharris tardigrade C. elegans / WormBase RockmanLab
  • Analysis of the C. elegans Argonaute family reveals that distinct Argonautes act sequentially during RNAi.
    Cell, Vol. 127, No. 4. (17 November 2006), pp. 747-757.
    by E Yigit, PJ Batista, Y Bei, KM Pang, CC Chen, NH Tolia, L Joshua-Tor, S Mitani, MJ Simard, CC Mello
    posted to argonaute c_elegans rnai small_rnas by dpollard on 2008-06-02 21:04:24 as ** along with 2 people and 2 groups tharris tardigrade C. elegans / WormBase RockmanLab
  • RNAi protects the Caenorhabditis elegans germline against transposition
    Trends in Genetics, Vol. 20, No. 7. (July 2004), pp. 314-319.
    by Nadine L Vastenhouw, Ronald H Plasterk
    posted to c_elegans germline review rnai small_rnas by dpollard on 2008-06-02 15:48:48 as ** along with 1 group RockmanLab
  • RNAi: the nuts and bolts of the RISC machine.
    Cell, Vol. 122, No. 1. (15 July 2005), pp. 17-20.
    by W Filipowicz
    posted to review rnai small_rnas by dpollard on 2008-06-02 15:43:11 as ** along with 2 people and 1 group ttjoseph Hosna RockmanLab
  • RNAi mechanisms in Caenorhabditis elegans.
    FEBS letters, Vol. 579, No. 26. (31 October 2005), pp. 5932-5939.
    by A Grishok
    posted to c_elegans rnai small_rnas by dpollard on 2008-06-02 15:42:17 as ** along with 2 people and 2 groups tharris jiny C. elegans / WormBase RockmanLab
  • piRNAs--the ancient hunters of genome invaders.
    Genes Dev, Vol. 21, No. 14. (15 July 2007), pp. 1707-1713.
    by JV Hartig, Y Tomari, K Förstemann
    posted to small_rnas by dpollard on 2008-06-02 15:41:39 as ** along with 5 people and 1 group sebastien_vigneau N0131826 cabbagezs zhanghuiqiong balicea RockmanLab
  • Argonautes confront new small RNAs.
    Curr Opin Chem Biol, Vol. 11, No. 5. (October 2007), pp. 569-577.
    by CR Faehnle, L Joshua-Tor
    posted to argonaute review rnai by dpollard on 2008-06-02 15:40:29 as ** along with 3 people and 2 groups tharris alwinpremanand zhanghuiqiong C. elegans / WormBase RockmanLab
  • Functional Proteomics Reveals the Biochemical Niche of C. elegans DCR-1 in Multiple Small-RNA-Mediated Pathways.
    Cell, Vol. 124, No. 2. (27 January 2006), pp. 343-354.
    by TF Duchaine, JA Wohlschlegel, S Kennedy, Y Bei, D Conte, K Pang, DR Brownell, S Harding, S Mitani, G Ruvkun, JR Yates, CC Mello
    posted to c_elegans rnai by dpollard on 2008-05-29 05:08:30 as ** along with 2 people and 2 groups tharris lhonigberg C. elegans / WormBase RockmanLab
  • PPW-1, a PAZ/PIWI protein required for efficient germline RNAi, is defective in a natural isolate of C. elegans.
    Curr Biol, Vol. 12, No. 17. (3 September 2002), pp. 1535-1540.
    by M Tijsterman, KL Okihara, K Thijssen, RH Plasterk
    posted to c_elegans natural_variation rnai rockman_journal_club worms by dpollard on 2008-05-29 00:22:53 as ***** along with 2 people and 2 groups tharris tardigrade C. elegans / WormBase RockmanLab
  • The End of Poverty: Economic Possibilities for Our Time
    (28 February 2006)
    by Jeffrey Sachs
    posted to no-tag by dpollard on 2008-05-23 20:35:39 as **
  • Common Wealth: Economics for a Crowded Planet
    (18 March 2008)
    by Jeffrey D Sachs
    posted to no-tag by dpollard on 2008-05-23 18:45:48 as **
  • Molecular-marker-facilitated investigations of quantitative-trait loci in maize. I. Numbers, genomic distribution and types of gene action.
    Genetics, Vol. 116, No. 1. (May 1987), pp. 113-125.
    by MD Edwards, CW Stuber, JF Wendel
    posted to dominance epistasis qtl rockman_journal_club seminal_paper trait_covariance by dpollard on 2008-05-22 23:07:55 as read along with 1 group RockmanLab
  • A high-resolution, nucleosome position map of C. elegans reveals a lack of universal sequence-dictated positioning
    Genome Res. (13 May 2008), gr.076463.108.
    by Anton Valouev, Jeffrey Ichikawa, Thaisan Tonthat, Jeremy Stuart, Swati Ranade, Heather Peckham, Kathy Zeng, Joel A Malek, Gina Costa, Kevin Mckernan, Arend Sidow, Andrew Fire, Steven M Johnson
    posted to c_elegans nucleosome sequence_specificity worms by dpollard on 2008-05-22 21:40:53 as ** along with 6 people and 2 groups tharris maximilianh caseybrown vega Stew aalibes C. elegans / WormBase RockmanLab
  • Mapping mendelian factors underlying quantitative traits using RFLP linkage maps.
    Genetics, Vol. 121, No. 1. (January 1989), pp. 185-199.
    by ES Lander, D Botstein
    posted to interval_mapping qtl rockman_journal_club seminal_paper by dpollard on 2008-05-22 21:34:29 as ***** along with 4 people and 1 group Ayest raiyar lp2 mcgannd RockmanLab
  • Extending Genomics to Natural Communities and Ecosystems
    Science, Vol. 320, No. 5875. (25 April 2008), pp. 492-495.
    by Thomas G Whitham, Stephen P Difazio, Jennifer A Schweitzer, Stephen M Shuster, Gery J Allan, Joseph K Bailey, Scott A Woolbright
    posted to ecology mapping molecular review by brant on 2008-05-15 19:05:15 as ** along with 6 people and 3 groups natstreet ArtemPankin neteler farhat jago jlgreen Khavkin's lab Green Lab iSEEM
  • From Genotype to Phenotype: Systems Biology Meets Natural Variation
    Science, Vol. 320, No. 5875. (25 April 2008), pp. 495-497.
    by Philip N Benfey, Thomas Mitchell-Olds
    posted to genotype-phenotype mapping review by brant on 2008-05-15 19:04:38 as ** along with 13 people and 3 groups Zephyrus natstreet stringertheory applebyb zwang bootsy echinotrix ArtemPankin adacier jyuh ashko kaniko daed Roswell Cancer Crosstalk R.E.A.D Khavkin's lab
  • Conserved distances between vertebrate highly conserved elements
    Human Molecular Genetics, Vol. 15, No. 19. (1 October 2006), pp. 2911-2922.
    by Sun, Hong, Skogerbo, Geir
    posted to spacing ultraconserved_regions vertebrate by brant on 2008-05-15 18:46:00 as ** along with 1 person operon
  • Multiple conserved regulatory elements with overlapping functions determine Sox10 expression in mouse embryogenesis.
    Nucleic Acids Res (26 September 2007)
    by Torsten Werner, Alexander Hammer, Mandy Wahlbuhl, Michael R R Bösl, Michael Wegner
    posted to conservation enhancer_finding vertebrate by brant on 2008-05-15 18:30:51 as ** along with 1 person maximilianh
  • Tracing the evolutionary history of Drosophila regulatory regions with models that identify transcription factor binding sites.
    Mol Biol Evol, Vol. 20, No. 5. (May 2003), pp. 703-714.
    by ET Dermitzakis, CM Bergman, AG Clark
    posted to evolution molecular non-coding by brant on 2008-05-13 19:00:46 as ** along with 2 people and 1 group cisevol emptyhb cis-regulatory-evolution
  • Analysis of conserved noncoding DNA in Drosophila reveals similar constraints in intergenic and intronic sequences.
    Genome Res, Vol. 11, No. 8. (August 2001), pp. 1335-1345.
    by CM Bergman, M Kreitman
    posted to evolution molecular non-coding by brant on 2008-05-13 19:00:14 as ** along with 4 people and 2 groups penka adijr cisevol hugoparker Nie cis-regulatory-evolution
  • The words of the regulatory code are arranged in a variable manner in highly conserved enhancers.
    Developmental biology (4 April 2008)
    by Sepand Rastegar, Isabell Hess, Thomas Dickmeis, Jean Christophe C Nicod, Raymond Ertzer, Yavor Hadzhiev, Wolf-Gerolf G Thies, Gerd Scherer, Uwe Strähle
    posted to enhancer evolution plasticity by brant on 2008-05-09 17:54:12 as ** along with 2 people and 1 group maximilianh cisevol cis-regulatory-evolution
  • Global regulatory logic for specification of an embryonic cell lineage
    Proceedings of the National Academy of Sciences (14 April 2008), 0711220105.
    by Paola Oliveri, Qiang Tu, Eric H Davidson
    posted to cis-regulation development network urchin by brant on 2008-05-09 17:50:34 as ** along with 2 people jjray Minty
  • Differences in the selection response of serially repeated color pattern characters: standing variation, development, and evolution
    BMC Evolutionary Biology, Vol. 8 (26 March 2008), 94.
    by Cerisse E Allen, Patricia Beldade, Bas J Zwaan, Paul M Brakefield
    posted to butterfly evolution patterning by brant on 2008-05-09 17:49:58 as **
  • Complex genetic interactions underlying expression differences between Drosophila races: Analysis of chromosome substitutions
    Proceedings of the National Academy of Sciences (22 April 2008), 0711774105.
    by Hurng-Yi Wang, Yonggui Fu, Mary S Mcpeek, Xuemei Lu, Sergey Nuzhdin, Anlong Xu, Jian Lu, Mao-Lien Wu, Chung-I Wu
    posted to cis-trans drosophila by brant on 2008-05-05 20:15:43 as ** along with 3 people maximilianh djkt inesdesantiago
  • Evidence for stabilizing selection in a eukaryotic enhancer element
    Nature, Vol. 403, No. 6769. (3 February 2000), pp. 564-567.
    by Michael Z Ludwig, Casey Bergman, Nipam H Patel, Martin Kreitman
    posted to enhancer evolution thesis turnover by brant on 2008-04-25 11:09:35 as ** along with 3 people and 1 group ranb cisevol emptyhb cis-regulatory-evolution
  • Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change.
    Development, Vol. 125, No. 5. (March 1998), pp. 949-958.
    by MZ Ludwig, NH Patel, M Kreitman
    posted to enhancer eve evolution stripe thesis by brant on 2008-04-25 10:40:07 as ** along with 3 people and 2 groups adepace cisevol emptyhb EisenLab cis-regulatory-evolution
  • Functional Evolution of a cis-Regulatory Module
    PLoS Biology, Vol. 3, No. 4. (1 April 2005), e93.
    by Michael Z Ludwig, Arnar Palsson, Elena Alekseeva, Casey M Bergman, Janaki Nathan, Martin Kreitman
    posted to complementation enhancer functional thesis by brant on 2008-04-25 10:32:51 as ** along with 4 people and 3 groups mimulus_99 blobbybirdman cisevol emptyhb UH - Computational Biology cis-regulatory-evolution Myxo group
  • Genomic sources of regulatory variation in cis and in trans.
    Cell Mol Life Sci, Vol. 62, No. 16. (August 2005), pp. 1779-1783.
    by PJ Wittkopp
    posted to cis-trans evolution review thesis by brant on 2008-04-25 09:34:18 as ** along with 2 people and 1 group adepace mimulus_99 EisenLab
  • Modulating Hox gene functions during animal body patterning
    Nature Reviews Genetics, Vol. 6, No. 12. (10 November 2005), pp. 893-904.
    by Joseph C Pearson, Derek Lemons, William Mcginnis
    posted to enhancer evolution hox review thesis by brant on 2008-04-25 09:33:05 as ** along with 3 people and 2 groups xico emilyhare BioMaxi EisenLab WetBiology
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