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wnpx's 关注列表 [1001 articles]

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  • Theories and practice of design for information systems: eight design perspectives in ten short weeks
    (2008), pp. 435-444.
    by David G Hendry, Batya Friedman
    posted to pedagogy design_practice by chunjean on 2008-11-18 04:27:16 as **
  • A systems biology approach to drug discovery.
    Advances in genetics, Vol. 60 (2008), pp. 603-635.
    by J Zhu, B Zhang, EE Schadt
    posted to sysbio networks drugs by ocs on 2008-11-17 18:28:38 as ** along with 2 people brianb jyuh
  • Integration of biological networks and gene expression data using Cytoscape.
    Nat Protoc, Vol. 2, No. 10. (2007), pp. 2366-2382.
  • Cytoscape: a software environment for integrated models of biomolecular interaction networks.
    Genome Res, Vol. 13, No. 11. (November 2003), pp. 2498-2504.
    by P Shannon, A Markiel, O Ozier, NS Baliga, JT Wang, D Ramage, N Amin, B Schwikowski, T Ideker
  • notes An RLC interconnect model based on fourier analysis
    Computer-Aided Design of Integrated Circuits and Systems, IEEE Transactions on, Vol. 24, No. 2. (2005), pp. 170-183.
    by Guoqing Chen, EG Friedman
    posted to interconnect-crosstalk by walteryhli on 2008-11-17 15:20:52 as **
  • Ab initio identification of functionally interacting pairs of cis-regulatory elements.
    Genome research, Vol. 18, No. 10. (October 2008), pp. 1643-1651.
    by BA Friedman, MB Stadler, N Shomron, Y Ding, CB Burge
    posted to regulation gene_pairs by jfr on 2008-11-17 14:58:22 as ***
  • A regenerative calcium response in Paramecium.
    The Journal of experimental biology, Vol. 56, No. 3. (June 1972), pp. 667-681.
    posted to thesis lc4 by hkuhn on 2008-11-16 21:38:30 as **
  • On heuristics, narrative and knowledge management
    Technovation, Vol. 28, No. 12. (December 2008), pp. 812-817.
    posted to knowledge-management by rrbarb on 2008-11-16 19:42:01 as ** along with 1 person derchao
  • Bayesian learning of biological pathways on genomic data assimilation
    Bioinformatics (25 September 2008), btn483.
    by Ryo Yoshida, Masao Nagasaki, Rui Yamaguchi, Seiya Imoto, Satoru Miyano, Tomoyuki Higuchi
    posted to pathway bayes by jyuh on 2008-11-15 02:52:38 as ** along with 4 people dullhunk phoenixzxl rdiaz renatomilani
  • Fast grid layout algorithm for biological networks with sweep calculation.
    Bioinformatics (Oxford, England) (18 April 2008)
    by Kaname Kojima, Masao Nagasaki, Satoru Miyano
    posted to network by jyuh on 2008-11-15 02:30:33 as ** along with 1 person bootsy
  • Decoding spike timing: The differential reverse-correlation method
    Biosystems, Vol. 93, No. 1-2. (July 2008), pp. 90-100.
    posted to sta method lif by bayesian on 2008-11-14 16:45:49 as **
  • Precision, Reliability, and Information-Theoretic Analysis of Visual Thalamocortical Neurons
    J Neurophysiol, Vol. 98, No. 5. (1 November 2007), pp. 2647-2663.
    by Romesh D Kumbhani, Mark J Nolt, Larry A Palmer
    posted to visual lgn information coding by bayesian on 2008-11-14 16:36:54 as ** along with 1 person alexstorer
  • Information Transmission Rates of Cat Retinal Ganglion Cells
    J Neurophysiol, Vol. 91, No. 3. (1 March 2004), pp. 1217-1229.
    by Christopher L Passaglia, John B Troy
    posted to visual information coding by bayesian on 2008-11-14 16:36:02 as **
  • Naturalistic Stimuli Increase the Rate and Efficiency of Information Transmission by Primary Auditory Afferents
    Proceedings of the Royal Society B: Biological Sciences, Vol. 262, No. 1365. (22 December 1995), pp. 259-265.
    by F Rieke, DA Bodnar, W Bialek
    posted to naturalstatistics information coding by bayesian on 2008-11-14 14:07:06 as ** along with 1 person sschafer
  • Bayesian parameter estimation via variational methods
    Statistics and Computing, Vol. 10 (2000), pp. 25-37.
    by Tommi S Jaakkola, Michael I Jordan
    posted to variational_bayes by sbarthelme on 2008-11-14 09:05:46 as ** along with 1 person bayes
  • Development of a mouse test for repetitive, restricted behaviors: Relevance to autism
    Behavioural Brain Research, Vol. 188, No. 1. (17 March 2008), pp. 178-194.
    by Sheryl S Moy, Jessica J Nadler, Michele D Poe, Randal J Nonneman, Nancy B Young, Beverly H Koller, Jacqueline N Crawley, Gary E Duncan, James W Bodfish
    posted to no-tag by cchand on 2008-11-14 01:56:22 as ** along with 1 person ffmks
  • Activity motifs reveal principles of timing in transcriptional control of the yeast metabolic network
    Nature Biotechnology, Vol. 26, No. 11. (26 October 2008), pp. 1251-1259.
    by Gal Chechik, Eugene Oh, Oliver Rando, Jonathan Weissman, Aviv Regev, Daphne Koller
    posted to google by ojabado on 2008-11-13 22:21:31 as ** along with 4 people jjray renatomilani megraw neils
  • BioPortal: Ontologies and Data Resources with the Click of a Mouse.
    AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium (2008), pp. 1223-1224.
    by M Musen, N Shah, N Noy, B Dai, M Dorf, N Griffith, JD Buntrock, C Jonquet, MJ Montegut, DL Rubin
    posted to web20 toread rdf owl ontology by egonw on 2008-11-13 16:37:15 as ** along with 2 people jyuh dullhunk
  • Regular Paths in SparQL: Querying the NCI Thesaurus.
    AMIA ... Annual Symposium proceedings / AMIA Symposium. AMIA Symposium (2008), pp. 161-165.
    by LT Detwiler, D Suciu, JF Brinkley
    posted to toread thesaurus sparql rdf owl nci by egonw on 2008-11-13 16:36:44 as ** along with 1 person dullhunk
  • Protein networks markedly improve prediction of subcellular localization in multiple eukaryotic species
    Nucl. Acids Res. (4 October 2008), gkn619.
    by Kiyoung Lee, Han-Yu Chuang, Andreas Beyer, Min-Kyung Sung, Won-Ki Huh, Bonghee Lee, Trey Ideker
  • Building Knowledge through Families of Experiments
    (1999)
  • A Programmable System for Acquisition and Reduction of Respiratory Physiological Data
    Annals of Biomedical Engineering, Vol. 17 (1989), pp. 93-108.
    by Steven J Jenkins
  • Resonant light scattering from metal nanoparticles: Practical analysis beyond Rayleigh approximation
    Applied Physics Letters, Vol. 83, No. 22. (2003), pp. 4625-4627.
    by Hitoshi Kuwata, Hiroharu Tamaru, Kunio Esumi, Kenjiro Miyano
  • Physical network models and multi-source data integration
    (2003), pp. 312-321.
    by Chen H Yeang, Tommi Jaakkola
    posted to senior-project networks by cswinburne on 2008-11-12 15:28:34 as **
  • Structure-based redesign of the dimerization interface reduces the toxicity of zinc-finger nucleases
    Nature Biotechnology, Vol. 25, No. 7. (01 July 2007), pp. 786-793.
    by Michal Szczepek, Vincent Brondani, Janine Büchel, Luis Serrano, David J Segal, Toni Cathomen
    posted to zfn by jyuh on 2008-11-12 14:30:23 as ** along with 2 people dsekaran DNAReplication
  • The Chemical Genomic Portrait of Yeast: Uncovering a Phenotype for All Genes
    Science, Vol. 320, No. 5874. (18 April 2008), pp. 362-365.
    by Maureen E Hillenmeyer, Eula Fung, Jan Wildenhain, Sarah E Pierce, Shawn Hoon, William Lee, Michael Proctor, St, Mike Tyers, Daphne Koller, Russ B Altman, Ronald W Davis, Corey Nislow, Guri Giaever
  • "Ideal Parent" structure learning for continuous variable networks
    (2004), pp. 400-409.
    by Iftach Nachman, Gal Elidan, Nir Friedman
    posted to learning continuous baye by espriggs on 2008-11-11 16:57:47 as **
  • Network-based classification of breast cancer metastasis
    Mol Syst Biol, Vol. 3 (16 October 2007)
    by Han-Yu Chuang, Eunjung Lee, Yu-Tsueng Liu, Doheon Lee, Trey Ideker
  • Critical parameters for genome editing using zinc finger nucleases.
    Mini reviews in medicinal chemistry, Vol. 8, No. 7. (June 2008), pp. 669-676.
    by TD Camenisch, MH Brilliant, DJ Segal
    posted to zfn by jyuh on 2008-11-11 13:49:23 as **
  • Lewis-Randall to McMillan-Mayer conversion for the thermodynamic excess functions of solutions. Part III. Common-ion mixtures of two electrolytes
    Journal of Solution Chemistry, Vol. 1, No. 5. (1 November 1972), pp. 419-431.
    by Harold L Friedman
    posted to statmek by mikaellund on 2008-11-11 12:55:07 as **
  • Chromosomal aberrations and gene expression profiles in non-small cell lung cancer.
    Lung cancer (Amsterdam, Netherlands), Vol. 56, No. 2. (May 2007), pp. 175-184.
    posted to lung_cancer integration gene_expression copy-number by jfr on 2008-11-10 15:33:26 as **
  • The Elements of Style
    (24 May 2007)
    by Jr
    posted to culture by bayesian on 2008-11-10 12:31:11 as **
  • Most mammalian mRNAs are conserved targets of microRNAs.
    Genome research (27 October 2008)
    by Robin C C Friedman, Kyle Kai-How K Farh, Christopher B B Burge, David Bartel
    posted to mirna mammalia by MSchipper on 2008-11-10 11:51:02 as ** along with 1 person samgj
  • Computing linear approximations to nonlinear neuronal response
    Network: Computation in Neural Systems, Vol. 19, No. 4. (2008), pp. 286-313.
    by Melinda E Koelling, Duane Q Nykamp
    posted to stc sta nonlinear method coding auditory by bayesian on 2008-11-10 10:19:03 as **
  • Nonlinear and extra-classical receptive field properties and the statistics of natural scenes
    Network: Computation in Neural Systems, Vol. 12, No. 3. (2001), pp. 331-350.
    posted to visual pca nonlinear naturalstatistics ica fourier coding by bayesian on 2008-11-10 10:16:26 as **
  • Distinct Modes of Regulation by Chromatin Encoded through Nucleosome Positioning Signals
    PLoS Comput Biol, Vol. 4, No. 11. (7 November 2008), e1000216.
    by Yair Field, Noam Kaplan, Yvonne Fondufe-Mittendorf, Irene K Moore, Eilon Sharon, Yaniv Lubling, Jonathan Widom, Eran Segal
    posted to nucleosome dna-binding by cabbagesofdoom on 2008-11-10 09:52:27 as ** along with 2 people djkt caseybrown
  • Probabilistic sensory recoding
    Current Opinion in Neurobiology (07 October 2008)
    posted to network decision coding by bayesian on 2008-11-10 09:33:44 as ** along with 1 person memming
  • Representation of binocular surfaces by cortical neurons
    Current Opinion in Neurobiology (08 October 2008)
    by H Bridge, B Cumming
    posted to visual space coding binocular by bayesian on 2008-11-10 09:33:21 as **
  • Emerging views of corticothalamic function
    Current Opinion in Neurobiology (06 October 2008)
    by F Briggs, W Usrey
    posted to thalamus network feedback coding by bayesian on 2008-11-10 09:32:44 as **
  • Synchronized firing in the retina
    Current Opinion in Neurobiology (27 October 2008)
    posted to visual population network model coding by bayesian on 2008-11-10 09:29:46 as **
  • Reared apart Korean female twins: Genetic and cultural influences on life histories, physical and health-related measures, and behavioral traits
    International Journal of Behavioral Development, Vol. 32, No. 6. (1 November 2008), pp. 542-548.
    by Nancy L Segal, Yoon-Mi Hur
    posted to no-tag by agraba on 2008-11-10 02:47:34 as **
  • The Sorcerer II Global Ocean Sampling Expedition: Northwest Atlantic through Eastern Tropical Pacific
    PLoS Biology, Vol. 5, No. 3. (1 March 2007), e77.
    by Douglas B Rusch, Aaron L Halpern, Granger Sutton, Karla B Heidelberg, Shannon Williamson, Shibu Yooseph, Dongying Wu, Jonathan A Eisen, Jeff M Hoffman, Karin Remington, Karen Beeson, Bao Tran, Hamilton Smith, Holly Baden-Tillson, Clare Stewart, Joyce Thorpe, Jason Freeman, Cynthia Andrews-Pfannkoch, Joseph E Venter, Kelvin Li, Saul Kravitz, John F Heidelberg, Terry Utterback, Yu-Hui Rogers, Luisa I Falcón, Valeria Souza, Germán Bonilla-Rosso, Luis E Eguiarte, David M Karl, Shubha Sathyendranath, Trevor Platt, Eldredge Bermingham, Victor Gallardo, Giselle Tamayo-Castillo, Michael R Ferrari, Robert L Strausberg, Kenneth Nealson, Robert Friedman, Marvin Frazier, Craig J Venter
  • Whither plant evo-devo?
    New Phytologist, Vol. 178, No. 3. (May 2008), pp. 468-472.
    posted to review by mlog on 2008-11-09 16:19:30 as ***
  • From filters to features: scale-space analysis of edge and blur coding in human vision.
    Journal of vision, Vol. 7, No. 13. (2007)
    by MA Georgeson, KA May, TC Freeman, GS Hesse
    posted to visual nonlinear coding by bayesian on 2008-11-09 10:59:06 as **
  • The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
    Nature, Vol. 452, No. 7190. (24 April 2008), pp. 991-996.
    by Ray Ming, Shaobin Hou, Yun Feng, Qingyi Yu, Alexandre Dionne-Laporte, Jimmy H Saw, Pavel Senin, Wei Wang, Benjamin V Ly, Kanako L Lewis, Steven L Salzberg, Lu Feng, Meghan R Jones, Rachel L Skelton, Jan E Murray, Cuixia Chen, Wubin Qian, Junguo Shen, Peng Du, Moriah Eustice, Eric Tong, Haibao Tang, Eric Lyons, Robert E Paull, Todd P Michael, Kerr Wall, Danny W Rice, Henrik Albert, Ming-Li Wang, Yun J Zhu, Michael Schatz, Niranjan Nagarajan, Ricelle A Acob, Peizhu Guan, Andrea Blas, Ching M Wai, Christine M Ackerman, Yan Ren, Chao Liu, Jianmei Wang, Jianping Wang, Jong-Kuk Na, Eugene V Shakirov, Brian Haas, Jyothi Thimmapuram, David Nelson, Xiyin Wang, John E Bowers, Andrea R Gschwend, Arthur L Delcher, Ratnesh Singh, Jon Y Suzuki, Savarni Tripathi, Kabi Neupane, Hairong Wei, Beth Irikura, Maya Paidi, Ning Jiang, Wenli Zhang, Gernot Presting, Aaron Windsor, Rafael Navajas-Perez, Manuel J Torres, Alex F Feltus, Brad Porter, Yingjun Li, Max A Burroughs, Ming-Cheng Luo, Lei Liu, David A Christopher, Stephen M Mount, Paul H Moore, Tak Sugimura, Jiming Jiang, Mary A Schuler, Vikki Friedman, Thomas Mitchell-Olds, Dorothy E Shippen, Claude W Depamphilis, Jeffrey D Palmer, Michael Freeling, Andrew H Paterson, Dennis Gonsalves, Lei Wang, Maqsudul Alam
    posted to publication by seninp on 2008-11-08 22:49:20 as read along with 4 people cmzmasek neils tanghaibao bpcusack
  • Chemical Markup, XML and the World-Wide Web. 8. Polymer Markup Language
    J. Chem. Inf. Model. (8 November 2008)
    by Nico Adams, Jerry Winter, Peter Murray-Rust, Henry S Rzepa
    posted to web semantic polymer markup language cml by egonw on 2008-11-08 13:20:24 as ***
  • Comprehensive genomic characterization defines human glioblastoma genes and core pathways.
    Nature (4 September 2008)
    by , , Roger McLendon, Allan Friedman, Darrell Bigner, , Erwin G G Van Meir, Daniel J J Brat, Gena Marie Mastrogianakis, Jeffrey J J Olson, , Tom Mikkelsen, Norman Lehman, , Ken Aldape, W K K Alfred Yung, Oliver Bogler, , Scott Vandenberg, Mitchel Berger, Michael Prados, , Donna Muzny, Margaret Morgan, Steve Scherer, Aniko Sabo, Lynn Nazareth, Lora Lewis, Otis Hall, Yiming Zhu, Yanru Ren, Omar Alvi, Jiqiang Yao, Alicia Hawes, Shalini Jhangiani, Gerald Fowler, Anthony San Lucas, Christie Kovar, Andrew Cree, Huyen Dinh, Jireh Santibanez, Vandita Joshi, Manuel L L Gonzalez-Garay, Christopher A A Miller, Aleksandar Milosavljevic, Larry Donehower, David A A Wheeler, Richard A A Gibbs, , Kristian Cibulskis, Carrie Sougnez, Tim Fennell, Scott Mahan, Jane Wilkinson, Liuda Ziaugra, Robert Onofrio, Toby Bloom, Rob Nicol, Kristin Ardlie, Jennifer Baldwin, Stacey Gabriel, Eric S S Lander, , Li Ding, Robert S S Fulton, Michael D D McLellan, John Wallis, David E E Larson, Xiaoqi Shi, Rachel Abbott, Lucinda Fulton, Ken Chen, Daniel C C Koboldt, Michael C C Wendl, Rick Meyer, Yuzhu Tang, Ling Lin, John R R Osborne, Brian H H Dunford-Shore, Tracie L L Miner, Kim Delehaunty, Chris Markovic, Gary Swift, William Courtney, Craig Pohl, Scott Abbott, Amy Hawkins, Shin Leong, Carrie Haipek, Heather Schmidt, Maddy Wiechert, Tammi Vickery, Sacha Scott, David J J Dooling, Asif Chinwalla, George M M Weinstock, Elaine R R Mardis, Richard K K Wilson, , Gad Getz, Wendy Winckler, Roel G W G Verhaak, Michael S S Lawrence, Michael O'Kelly, Jim Robinson, Gabriele Alexe, Rameen Beroukhim, Scott Carter, Derek Chiang, Josh Gould, Supriya Gupta, Josh Korn, Craig Mermel, Jill Mesirov, Stefano Monti, Huy Nguyen, Melissa Parkin, Michael Reich, Nicolas Stransky, Barbara A A Weir, Levi Garraway, Todd Golub, Matthew Meyerson, , Lynda Chin, Alexei Protopopov, Jianhua Zhang, Ilana Perna, Sandy Aronson, Narayan Sathiamoorthy, Georgia Ren, Jun Yao, W Ruprecht R Wiedemeyer, Hyunsoo Kim, Sek Won Kong, Yonghong Xiao, Isaac S S Kohane, Jon Seidman, Peter J J Park, Raju Kucherlapati, , Peter W W Laird, Leslie Cope, James G G Herman, Daniel J J Weisenberger, Fei Pan, David Van Den Berg, Leander Van Neste, Joo Mi Yi, Kornel E E Schuebel, Stephen B B Baylin, , Devin M M Absher, Jun Z Z Li, Audrey Southwick, Shannon Brady, Amita Aggarwal, Tisha Chung, Gavin Sherlock, James D D Brooks, Richard M M Myers, , Paul T T Spellman, Elizabeth Purdom, Lakshmi R R Jakkula, Anna V V Lapuk, Henry Marr, Shannon Dorton, Yoon Gi Choi, Ju Han, Amrita Ray, Victoria Wang, Steffen Durinck, Mark Robinson, Nicholas J J Wang, Karen Vranizan, Vivian Peng, Eric Van Name, Gerald V V Fontenay, John Ngai, John G G Conboy, Bahram Parvin, Heidi S S Feiler, Terence P P Speed, Joe W W Gray, , Cameron Brennan, Nicholas D D Socci, Adam Olshen, Barry S S Taylor, Alex Lash, Nikolaus Schultz, Boris Reva, Yevgeniy Antipin, Alexey Stukalov, Benjamin Gross, Ethan Cerami, Wei Qing Wang, Li-Xuan X Qin, Venkatraman E E Seshan, Liliana Villafania, Magali Cavatore, Laetitia Borsu, Agnes Viale, William Gerald, Chris Sander, Marc Ladanyi, , Charles M M Perou, D Neil Hayes, Michael D D Topal, Katherine A A Hoadley, Yuan Qi, Sai Balu, Yan Shi, Junyuan Wu, , Robert Penny, Michael Bittner, Troy Shelton, Elizabeth Lenkiewicz, Scott Morris, Debbie Beasley, Sheri Sanders, , Ari Kahn, Robert Sfeir, Jessica Chen, David Nassau, Larry Feng, Erin Hickey, Jinghui Zhang, John N N Weinstein, , Anna Barker, Daniela S S Gerhard, Joseph Vockley, Carolyn Compton, Jim Vaught, Peter Fielding, Martin L L Ferguson, Carl Schaefer, Subhashree Madhavan, Kenneth H H Buetow, , Francis Collins, Peter Good, Mark Guyer, Brad Ozenberger, Jane Peterson, Elizabeth Thomson
  • Inferring Pathway Activity toward Precise Disease Classification
    PLoS Comput Biol, Vol. 4, No. 11. (7 November 2008), e1000217.
    by Eunjung Lee, Han-Yu Chuang, Jong-Won Kim, Trey Ideker, Doheon Lee
    posted to pathway microarray geneset classification by ptrobajo on 2008-11-07 20:43:27 as **
  • Shortest Path analysis using Partial Correlations for classifying gene functions from gene expression data.
    Bioinformatics (Oxford, England) (3 November 2008)
    by A M M Fitch, M B B Jones
    posted to bioinformatics by Doug on 2008-11-07 17:52:10 as ** along with 1 person jyuh
  • Estimating Entropy Rates with Bayesian Confidence Intervals
    Neural Computation, Vol. 17, No. 7. (July 2005), pp. 1531-1576.
    by Matthew B Kennel, Jonathon Shlens, Henry D Abarbanel, E Chichilnisky
    posted to methods information coding by bayesian on 2008-11-07 13:30:33 as ** along with 2 people rpadams dpf
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