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wnpx's toread [49 articles]

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  • From in vivo to in silico biology and back
    Nature, Vol. 443, No. 7111., pp. 527-533.
    by Barbara Di Ventura, Caroline Lemerle, Konstantinos Michalodimitrakis, Luis Serrano
    posted to sysbio toread by wnpx on 2007-07-27 05:31:05 as *** along with 5 people aalibes mmt dbikard jrbanga vietanh0
  • Probabilistic modeling and machine learning in structural and systems biology.
    BMC Bioinformatics, Vol. 8 Suppl 2 (2007)
    by S Kaski, J Rousu, E Ukkonen
    posted to dt machinelearning modeling new probabilistic sysbio toread by wnpx on 2007-06-28 09:47:27 as ***** along with 1 person shigepong
  • Ten top reasons for systems biology to get into model-driven engineering
    (2006), pp. 55-58.
    by Magali Roux-Rouqui&\#233;, Debora S da Rosa
    posted to dt modeldriven sysbio toread by wnpx on 2007-06-11 07:19:20 as ** along with 1 person and 2 groups carmaus dIEMoSIRIS MoSi-Rostock
  • Systems biology standards—the community speaks
    Nature Biotechnology, Vol. 25, No. 4., pp. 390-391.
    by Edda Klipp, Wolfram Liebermeister, Anselm Helbig, Axel Kowald, Jörg Schaber
    posted to sysbio toread by wnpx on 2007-04-20 09:45:40 as ** along with 1 person mhucka
  • Integrating scientific cultures
    Mol Syst Biol, Vol. 3 (17 April 2007)
    by Trey Ideker, Vineet Bafna, Thomas Lemberger
    posted to sysbio toread by wnpx on 2007-04-20 09:45:20 as ** along with 3 people and 2 groups dchughes zwang rayoulike G4ID Genetics-of-Gambling
  • Bayesian methods in bioinformatics and computational systems biology.
    Brief Bioinform (12 April 2007)
    by Darren J J Wilkinson
    posted to bayesian sysbio toread by wnpx on 2007-04-14 20:32:01 as ** along with 14 people and 1 group jyuh Borelli jfr neveaire zwang bertelsen cabbagezs julesyoo blobbybirdman hpaces vietanh0 waszak i-stevenson quianominorleo Bioinformatics
  • Probabilistic independence networks for hidden Markov probability models
    (1996)
    by P Smyth, D Heckerman, M Jordan
    posted to avod bayesian dt hmm toread by wnpx on 2007-04-12 20:33:15 as ** along with 1 person and 1 group garyfeng ReadingLab
  • Bioengineering and Systems Biology
    Annals of Biomedical Engineering, Vol. 34, No. 2. (February 2006), pp. 257-264.
    by Trey Ideker, L Winslow, A Lauffenburger
    posted to sysbio toread by wnpx on 2007-04-07 11:08:46 as ** along with 2 people and 1 group Badger cdppublications CDP
  • 'On-the-fly' or 'generate-first' modeling?
    Nature Biotechnology, Vol. 23, No. 11., pp. 1344-1345.
    by Michael L Blinov, James R Faeder, Jin Yang, Byron Goldstein, William S Hlavacek
    posted to modeling sysbio toread by wnpx on 2007-04-01 10:25:41 as **
  • Systems biology. Tracing life's circuitry.
    Science, Vol. 302, No. 5651. (5 December 2003), pp. 1646-1649.
    by E Pennisi
    posted to dt od sysbio toread by wnpx on 2007-04-01 10:23:50 as ** along with 1 person alexg
  • The Bayesian revolution in genetics.
    Nat Rev Genet, Vol. 5, No. 4. (April 2004), pp. 251-261.
    by MA Beaumont, B Rannala
    posted to bayesian dt paywall toread by wnpx on 2007-03-25 19:28:00 as ** along with 1 person oilcan
  • Predicting protein functions from redundancies in large-scale protein interaction networks.
    Proc Natl Acad Sci U S A, Vol. 100, No. 22. (28 October 2003), pp. 12579-12583.
    by MP Samanta, S Liang
    posted to interaction protein toread by wnpx on 2007-03-25 19:27:07 as ** along with 2 people jiny carlk
  • A protein interaction network for pluripotency of embryonic stem cells
    Nature
    by Jianlong Wang, Sridhar Rao, Jianlin Chu, Xiaohua Shen, Dana N Levasseur, Thorold W Theunissen, Stuart H Orkin
    posted to cell interaction protein stem toread by wnpx on 2007-03-22 21:46:40 as ** along with 6 people and 2 groups kentsis marcius yeastyboy Ao_Li2007 iris_2001 tdmckee BioinfoCIPF SGU-CIPF
  • Bringing metabolic networks to life: integration of kinetic, metabolic, and proteomic data
    Theoretical Biology and Medical Modelling, Vol. 3 (15 December 2006), 42.
    by Wolfram Liebermeister, Edda Klipp
    posted to metabolic toread by wnpx on 2007-03-22 21:45:00 as ** along with 5 people and 1 group lflorez jyuh raiyar fishtank jrbanga steinmetzlab
  • Probabilistic inference of molecular networks from noisy data sources
    Bioinformatics, Vol. 20, No. 8. (22 May 2004), pp. 1205-1213.
    by Ivan Iossifov, Michael Krauthammer, Carol Friedman, Vasileios Hatzivassiloglou, Joel S Bader, Kevin P White, Andrey Rzhetsky
    posted to bayesian dt inference od toread by wnpx on 2007-03-22 21:44:29 as *** along with 1 person iris_2001
  • Building with a scaffold: emerging strategies for high- to low-level cellular modeling.
    Trends Biotechnol, Vol. 21, No. 6. (June 2003), pp. 255-262.
    by T Ideker, D Lauffenburger
    posted to modeling sysbio toread by wnpx on 2007-03-21 19:15:59 as *** along with 2 people and 2 groups mhucka roland_ewald dIEMoSIRIS MoSi-Rostock
  • Combining biological networks to predict genetic interactions.
    Proc Natl Acad Sci U S A, Vol. 101, No. 44. (2 November 2004), pp. 15682-15687.
    by SL Wong, LV Zhang, AH Tong, Z Li, DS Goldberg, OD King, G Lesage, M Vidal, B Andrews, H Bussey, C Boone, FP Roth
    posted to dataintegration toread by wnpx on 2007-03-18 22:15:09 as *** along with 7 people and 3 groups dbk lfriedl balajis reidy eukfn patrycja_missiuro ksiek streptomyces dbk-lab kdl
  • Computational approach to systems biology: from fraction to integration and beyond
    NanoBioscience, IEEE Transactions on, Vol. 3, No. 3. (2004), pp. 144-152.
    by PK Dhar, Hao Zhu, SK Mishra
    posted to dataintegration dt od sysbio toread by wnpx on 2007-03-18 22:08:15 as ** along with 3 people and 1 group eweaver biosv tlse65 smac
  • Integrating 'omic' information: a bridge between genomics and systems biology.
    Trends Genet, Vol. 19, No. 10. (October 2003), pp. 551-560.
    by H Ge, AJ Walhout, M Vidal
    posted to dataintegration dt sysbio toread by wnpx on 2007-03-18 22:07:17 as *** along with 6 people and 2 groups tharris lfriedl biosv reidy grahamc sanchezbuelna C. elegans / WormBase kdl
  • Search for organising principles: understanding in systems biology
    Systems Biology, IEE, Vol. 1, No. 1. (2004), pp. 19-27.
    by MD Mesarovic, SN Sreenath, JD Keene
    posted to dt sysbio toread by wnpx on 2007-03-18 22:04:50 as *** along with 2 people chihchun_chen biosv
  • Systems biology: in the broadest sense of the word
    Environmental Microbiology, Vol. 7, No. 4. (April 2005), pp. 482-483.
    by W Ussery, Jensen L Juhl
    posted to dt sysbio toread by wnpx on 2007-03-18 22:03:13 as *** along with 2 people biosv larsjuhljensen
  • Systems biology: its practice and challenges.
    Cell, Vol. 121, No. 4. (20 May 2005), pp. 511-513.
    by A Aderem
    posted to dt sysbio toread by wnpx on 2007-03-18 22:02:41 as *** along with 4 people and 2 groups Badger LeightonP biosv carmaus dIEMoSIRIS MoSi-Rostock
  • SYSTEMS BIOLOGY: The variable cell
    Nature Reviews Molecular Cell Biology, Vol. 6, No. 11. (01 November 2005), pp. 822-822.
    by Arianne Heinrichs
    posted to dt sysbio toread by wnpx on 2007-03-18 22:02:05 as *** along with 1 person biosv
  • Systems biology, integrative biology, predictive biology.
    Cell, Vol. 121, No. 4. (20 May 2005), pp. 505-506.
    by ET Liu
    posted to dt sysbio toread by wnpx on 2007-03-18 21:59:53 as ** along with 2 people LeightonP biosv
  • Systems Biology: Will it work?
    Systems Biology, IEE, Vol. 2, No. 1. (2005), pp. 1-4.
    by C Sansom
    posted to dt sysbio toread by wnpx on 2007-03-18 21:59:28 as *** along with 2 people chihchun_chen biosv
  • Is there biological research beyond Systems Biology? A comparative analysis of terms
    Molecular Systems Biology, Vol. 1, No. 1. (25 May 2005), pp. msb4100016-E1-msb4100016-E2.
    by Peer Bork
    posted to dt sysbio toread by wnpx on 2007-03-18 21:59:01 as ** along with 1 person biosv
  • Systems interface biology.
    J R Soc Interface, Vol. 3, No. 10. (22 October 2006), pp. 603-616.
    by FJ Doyle, J Stelling
    posted to sysbio toread by wnpx on 2007-03-14 12:55:05 as ** along with 2 people jrbanga karfunkel
  • Supervised graph inference
    (2005), pp. 1433-1440.
    by Jean-Philippe Vert, Yoshihiro Yamanishi
    posted to graph inference machinelearning supervised toread by wnpx on 2007-03-08 19:20:29 as ** along with 1 person and 1 group lfriedl kdl
  • A probability-based approach for high-throughput protein phosphorylation analysis and site localization
    Nature Biotechnology, Vol. 24, No. 10. (10 September 2006), pp. 1285-1292.
    by Sean A Beausoleil, Judit Villén, Scott A Gerber, John Rush, Steven P Gygi
    posted to bayesian dt protein toread by wnpx on 2007-02-11 17:46:06 as ** along with 4 people jyuh csardas Ao_Li2007 Thomasah
  • notes Whole-istic Biology
    Science, Vol. 295, No. 5560. (1 March 2002), 1661.
    by Lisa Chong, Bryan L Ray
    posted to background sysbio toread by wnpx on 2007-02-05 18:46:40 as **** along with 1 person margaritis
  • Meeting report: the future and limits of systems biology.
    Sci STKE, Vol. 2005, No. 278. (5 April 2005)
    by E Werner
    posted to toread sysbio by wnpx on 2007-02-05 18:30:42 as ** along with 1 person BioGeek
  • An empirical Bayes approach to inferring large-scale gene association networks.
    Bioinformatics, Vol. 21, No. 6. (March 2005), pp. 754-764.
    by J Schäfer, K Strimmer
    posted to bayesian dt ggm toread by wnpx on 2007-02-05 18:07:28 as ** along with 6 people and 1 group gabe_rosser eldan gangli Ao_Li2007 StatAnika tmmurali tulip
  • Reconstructing gene-regulatory networks from time series, knock-out data, and prior knowledge
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Florian Geier, Jens Timmer, Christian Fleck
    posted to toread inference bayesian by wnpx on 2007-02-03 19:14:18 as ** along with 5 people edwardmorrissey jyuh tuck Ao_Li2007 ptrobajo
  • Systems biology. Life's complexity pyramid.
    Science, Vol. 298, No. 5594. (25 October 2002), pp. 763-764.
    by ZN Oltvai, AL Barabási
    posted to dt sysbio toread by wnpx on 2007-02-01 17:20:00 as *** along with 7 people and 6 groups eldan yas sameetmehta jwdietrich mattjb franklin Ema MathBio Cybernetics ComplexAdaptiveSystems DSTO-CAS Biomedical_Cybernetics AQUA-FONTIS-Study
  • Toward large-scale modeling of the microbial cell for computer simulation.
    J Biotechnol, Vol. 113, No. 1-3. (30 September 2004), pp. 281-294.
    by N Ishii, M Robert, Y Nakayama, A Kanai, M Tomita
    posted to toread simulation modeling dt by wnpx on 2007-01-21 22:06:13 as ** along with 8 people and 3 groups csanford eldan Doug cottrell livingthingdan josepe fishtank roland_ewald livingthing dIEMoSIRIS MoSi-Rostock
  • A formal language for computational systems biology.
    OMICS, Vol. 8, No. 4. (2004), pp. 370-380.
    by DD Errampalli, C Priami, P Quaglia
    posted to toread sysbio dt by wnpx on 2007-01-21 22:05:07 as *** along with 3 people eldan Doug josepe
  • Computational modelling, explicit mathematical treatments, and scientific explanation
    (1 August 2006), pp. 520-526.
    by John Bryden, Jason Noble
    edited by Luis M Rocha, Larry S Yaeger, Mark A Bedau, Dario Floreano, Robert L Goldstone, Alessandro Vespignani
    posted to toread modeling by wnpx on 2007-01-21 22:02:05 as ** along with 1 person eldan
  • Evolution, Interactions, and Biological Networks
    PLoS Biology, Vol. 5, No. 1. (1 January 2007), e11.
    by Joshua S Weitz, Philip N Benfey, Ned S Wingreen
    posted to toread network by wnpx on 2007-01-21 22:00:15 as ** along with 14 people and 1 group eldan aalibes cmmorel balajis cerkut jhatrimatri josepe timothee srfairclough hmk bootsy Ema bpcusack skumagai contact-id
  • The nature of systems biology.
    Trends Microbiol (17 November 2006)
    by Frank J J Bruggeman, Hans V V Westerhoff
    posted to dt sysbio toread by wnpx on 2007-01-21 21:17:03 as *** along with 11 people and 5 groups alorena eldan jwm jmeppley rabu aswin kengg dolhuis livingthingdan mkrajnak ptpases Radiation_Damage Stressosome SNE livingthing Plantandetc
  • Toward computational systems biology.
    Cell Biochem Biophys, Vol. 40, No. 2. (2004), pp. 167-184.
    by L You
    posted to toread sysbio by wnpx on 2007-01-14 22:57:46 as ** along with 2 people eldan Doug
  • Bridging structural biology and genomics: assessing protein interaction data with known complexes
    Trends in Genetics, Vol. 18, No. 10. (1 October 2002), pp. 529-536.
    by Aled M Edwards, Bart Kus, Ronald Jansen, Dov Greenbaum, Jack Greenblatt, Mark Gerstein
    posted to bayesian complex dt interaction network protein toread by wnpx on 2006-08-24 18:45:59 as *** along with 4 people and 1 group lfriedl reidy ruvido wilbur kdl
  • The meaning of systems biology.
    Cell, Vol. 121, No. 4. (20 May 2005), pp. 503-504.
    by MW Kirschner
    posted to background-bio dt sec-background-sysbio sysbio systemsbiology toread by wnpx on 2006-07-20 15:56:42 as ** along with 3 people LeightonP biosv lpfernandes
  • YeastHub: a semantic web use case for integrating data in the life sciences domain.
    Bioinformatics, Vol. 21 Suppl 1 (1 June 2005)
    by KH Cheung, KY Yip, A Smith, R Deknikker, A Masiar, M Gerstein
    posted to dataintegration dt rdf semanticweb service toread web by wnpx on 2006-07-04 23:28:02 as *** along with 10 people and 3 groups gorlitsky wcrosbie Schmidtc benny dullhunk caporaso mbeautru agileproteomics pablomendes jyuh Wikipedia CoP_CMS biomedical-nlp
  • Bayesian network analysis of signaling networks: a primer.
    Sci STKE, Vol. 2005, No. 281. (26 April 2005)
    by D Pe'er
    posted to bayesian bayesnet inference network signaling toread by wnpx on 2006-01-30 16:32:36 as **** along with 6 people ptrobajo saman_vp tmmurali Borelli ryang jhatrimatri
  • Handbook of Graph Grammars and Computing by Graph Transformation: Applications, Languages and Tools
    by H Ehrig, G Engels, HJ Kreowski
    posted to book graphrewriting lib-hut loan toread by wnpx on 2006-01-29 19:27:19 as ** along with 3 people and 2 groups RWeiss dlobo AbnerCYH GEB CSBBGraphTheory
  • A data integration methodology for systems biology.
    Proc Natl Acad Sci U S A (21 November 2005)
    by Daehee Hwang, Alistair G G Rust, Stephen Ramsey, Jennifer J J Smith, Deena M M Leslie, Andrea D D Weston, Pedro de Atauri, John D D Aitchison, Leroy Hood, Andrew F F Siegel, Hamid Bolouri
    posted to biology dataintegration sysbio systemsbiology toread by wnpx on 2006-01-21 20:13:43 as **** along with 18 people and 4 groups ggallone brian tmmurali dragonrez okarsligil jfr lfriedl Schmidtc eweaver biosv Sharpshoot noano mbeautru reidy grahamc GeeSharpMinor nedwards athleem Jarman Lab kdl Bioinformatics JJJ
  • Learning Probabilistic Relational Models
    Lecture Notes in Computer Science, Vol. 1864 (2000), pp. 322-??.
    by Lise Getoor
    posted to learning prm toread by wnpx on 2005-12-30 17:22:45 as ** along with 3 people and 1 group bpacker krisl paulomagalhaes vision-ng
  • Systems modeling: a pathway to drug discovery.
    Curr Opin Chem Biol, Vol. 9, No. 4. (August 2005), pp. 400-406.
    by P Rajasethupathy, SJ Vayttaden, US Bhalla
    posted to dt general modeling sysbio toread by wnpx on 2005-12-30 15:03:10 as ** along with 4 people snuppepuppan kuhn mmt jdiggans
  • SYSTEMS BIOLOGY: Less Is More in Modeling Large Genetic Networks
    Science, Vol. 310, No. 5747. (21 October 2005), pp. 449-451.
    by Stefan Bornholdt
    posted to dt general modeling networks sysbio toread by wnpx on 2005-12-30 14:52:02 as *** along with 7 people and 1 group jmenche snuppepuppan eldan jmeppley balajis biosv fishtank Bioinformatics
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