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wnpx's network [115 articles]

当前文献位于 wnpx's 文献库 标签分类为 network. You can also see everyone's network.
  • Inferring Transcriptional Regulatory Networks from High-throughput Data.
    Bioinformatics (22 September 2007)
    by Rui-Sheng S Wang, Yong Wang, Xiang-Sun S Zhang, Luonan Chen
    posted to inference network regulation transcription by wnpx on 2007-11-21 15:35:54 as ** along with 5 people Borelli rdiaz sebastien_vigneau shigepong cabbagezs
  • Functional annotation and network reconstruction through cross-platform integration of microarray data
    Nature Biotechnology, Vol. 23, No. 2. (16 January 2005), pp. 238-243.
    by Xianghong J Zhou, Ming-Chih J Kao, Haiyan Huang, Angela Wong, Juan Nunez-Iglesias, Michael Primig, Oscar M Aparicio, Caleb E Finch, Todd E Morgan, Wing H Wong
    posted to dataintegration dt network reconstruction by wnpx on 2007-08-10 09:50:36 as ** along with 7 people and 2 groups cswinburne setar andytseng imouthesmp lyongu rdiaz bsmagic Bioinformatics bioinplant
  • Exploring the independence of gene regulatory modules
    (17-18 June 2006)
    by Janne Nikkilä, Antti Honkela, Samuel Kaski
    posted to gene independence network regulation by wnpx on 2007-07-27 17:36:46 as **
  • Module Networks: Discovering Regulatory Modules and their Condition Specific Regulators from Gene Expression Data
    by Eran Segal, Michael Shapira, Aviv Regev, Dana Pe'er, David Botstein, Daphne Koller, Nir Friedman
    posted to bayesian gene modeule network regulation by wnpx on 2007-06-11 07:20:10 as ** along with 2 people dimatura lp2
  • Network-based prediction of protein function
    Mol Syst Biol, Vol. 3 (13 March 2007)
    by Roded Sharan, Igor Ulitsky, Ron Shamir
    posted to function network prediction protein by wnpx on 2007-06-11 07:19:43 as ** along with 13 people and 1 group druvus pengchy jjray cmmorel julius mikaelhuss massivemayhem cjeans iris_2001 karfunkel mingzhi ellakat carlk SysbioMPI-TCells
  • A Markov Random Field Model for Network-based Analysis of Genomic Data.
    Bioinformatics (5 May 2007)
    by Zhi Wei, Hongzhe Li
    posted to gene markov markovnets mrf network projdt by wnpx on 2007-05-22 10:43:54 as *** along with 2 people iris_2001 ptrobajo
  • Creation and implications of a phenome-genome network
    Nature Biotechnology, Vol. 24, No. 1. (10 January 2006), pp. 55-62.
    by Atul J Butte, Isaac S Kohane
    posted to network by wnpx on 2007-04-01 11:40:08 as ** along with 8 people and 2 groups BioGeek bpb okarsligil balajis tag elsiatcase eukfn jyuh Bioinformatics metric_embeddings
  • Alternative routes and mutational robustness in complex regulatory networks
    Biosystems, Vol. 88, No. 1-2. (March 2007), pp. 163-172.
    by Andreas Wagner, Jeremiah Wright
    posted to network regulation signaling sysbio by wnpx on 2007-03-31 20:32:55 as ** along with 1 person eldan
  • Metabolic stability and epigenesis in randomly constructed genetic nets
    Journal of Theoretical Biology, Vol. 22, No. 3. (March 1969), pp. 437-467.
    by SA Kauffman
    posted to boolean network by wnpx on 2007-03-22 21:53:03 as ** along with 3 people verdicchio eldan gcalda
  • Taking the mystery out of biological networks.
    EMBO Rep, Vol. 5, No. 4. (April 2004), pp. 349-350.
    by P Aloy, RB Russell
    posted to network sysbio by wnpx on 2007-03-22 21:51:08 as ** along with 3 people bicko chad_davis mmt
  • Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions
    Nature Genetics, Vol. 39, No. 2. (07 January 2007), pp. 199-206.
    by Robert P St Onge, Ramamurthy Mani, Julia Oh, Michael Proctor, Eula Fung, Ronald W Davis, Corey Nislow, Frederick P Roth, Guri Giaever
    posted to deletion gene network by wnpx on 2007-03-22 21:50:36 as ** along with 5 people aalibes tmmurali Ao_Li2007 gwcarter raiyar
  • Iterative approach to model identification of biological networks.
    BMC Bioinformatics, Vol. 6 (2005), 155.
    by KG Gadkar, R Gunawan, Doyle
    posted to modeling network sysbio by wnpx on 2007-03-22 21:48:58 as ** along with 1 person jrbanga
  • Identification of functional modules using network topology and high-throughput data
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Igor Ulitsky, Ron Shamir
    posted to dataintegration network by wnpx on 2007-03-22 21:47:40 as ** along with 10 people roys frohike tmmurali dragonrez jfr Ao_Li2007 lyndon bertelsen ellakat carlk
  • How to infer gene networks from expression profiles
    Mol Syst Biol, Vol. 3 (13 February 2007)
    by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo
    posted to expression gene inference network by wnpx on 2007-03-17 11:37:39 as ** along with 18 people and 3 groups ggallone ptrobajo druvus gabe_rosser cswinburne jfr eckart_bindewald nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet heliopais mariakmejia tmmurali Jarman Lab EBI-regulation Plantandetc
  • Iterative approach to model identification of biological networks.
    BMC Bioinformatics, Vol. 6 (20 June 2005)
    by KG Gadkar, R Gunawan, FJ Doyle
    posted to dynamic modeling network by wnpx on 2007-02-26 22:16:16 as ** along with 4 people carlk drmabuse eweaver jrbanga
  • notes Modelling gene expression data using dynamic Bayesian networks
    (1999)
    by Kevin Murphy, Saira Mian
    posted to bayesian dbn dt expression expressiondata gene network by wnpx on 2007-02-05 18:04:33 as ** along with 1 person dimatura
  • A Bayesian connectivity-based approach to constructing probabilistic gene regulatory networks.
    Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 2918-2927.
    by X Zhou, X Wang, R Pal, I Ivanov, M Bittner, ER Dougherty
    posted to reconstruction network inference gene bayesian by wnpx on 2007-02-05 18:00:21 as **
  • Physical network models.
    J Comput Biol, Vol. 11, No. 2-3. (2004), pp. 243-262.
    by CH Yeang, T Ideker, T Jaakkola
    posted to regulation physicalmodel network dataintegration datafusion by wnpx on 2007-02-05 17:58:11 as ** along with 3 people tmmurali noano koller
  • Sparse graphical Gaussian modeling of the isoprenoid gene network in Arabidopsis thaliana.
    Genome Biol, Vol. 5, No. 11. (2004)
    by A Wille, P Zimmermann, E Vranová, A Fürholz, O Laule, S Bleuler, L Hennig, A Prelic, P von Rohr, L Thiele, E Zitzler, W Gruissem, P Bühlmann
    posted to sparse network modeling graphical gene gaussian by wnpx on 2007-02-05 17:56:50 as **
  • Modeling transcriptional control in gene networks--methods, recent results, and future directions.
    Bull Math Biol, Vol. 62, No. 2. (March 2000), pp. 247-292.
    by P Smolen, DA Baxter, JH Byrne
    posted to transcription network modeling gene by wnpx on 2007-02-05 17:55:11 as ** along with 1 person klo
  • Reconstructing biological networks using conditional correlation analysis.
    Bioinformatics, Vol. 21, No. 6. (March 2005), pp. 765-773.
    by JJ Rice, Y Tu, G Stolovitzky
    posted to reverseengineering regulation reconstruction network inference gene correlation by wnpx on 2007-02-05 17:48:37 as **
  • Probabilistic representation of gene regulatory networks.
    Bioinformatics, Vol. 20, No. 14. (22 September 2004), pp. 2258-2269.
    by L Mao, H Resat
    posted to regulation network gene by wnpx on 2007-02-05 17:46:39 as **
  • Reconciling gene expression data with known genome-scale regulatory network structures.
    Genome Res, Vol. 13, No. 11. (November 2003), pp. 2423-2434.
    by MJ Herrgård, MW Covert, BØ Palsson
    posted to network motif gene expression by wnpx on 2007-02-05 17:43:35 as ** along with 2 people opheliav tvdbulck
  • Genetic network inference: from co-expression clustering to reverse engineering.
    Bioinformatics, Vol. 16, No. 8. (August 2000), pp. 707-726.
    by P D'haeseleer, S Liang, R Somogyi
    posted to reverseengineering network gene by wnpx on 2007-02-05 17:40:58 as ** along with 3 people nolodie bayesian qfwills
  • Transcriptional networks: reverse-engineering gene regulation on a global scale.
    Curr Opin Microbiol, Vol. 7, No. 6. (December 2004), pp. 638-646.
    by G Chua, MD Robinson, Q Morris, TR Hughes
    posted to transcription review reverseengineering regulation network gene by wnpx on 2007-02-05 17:38:34 as ** along with 2 people and 1 group nickluscombe koller EBI-regulation
  • Transcriptional Regulatory Networks in Saccharomyces cerevisiae
    Science, Vol. 298, No. 5594. (October 2002), pp. 799-804.
    by Tong I Lee, Nicola J Rinaldi, François Robert, Duncan T Odom, Ziv Bar-Joseph, Georg K Gerber, Nancy M Hannett, Christopher T Harbison, Craig M Thompson, Itamar Simon, Julia Zeitlinger, Ezra G Jennings, Heather L Murray, Benjamin D Gordon, Bing Ren, John J Wyrick, Jean-Bosco Tagne, Thomas L Volkert, Ernest Fraenkel, David K Gifford, Richard A Young
    posted to transcription regulation network gene by wnpx on 2007-02-01 17:19:31 as ** along with 1 person eldan
  • A model of transcriptional regulatory networks based on biases in the observed regulation rules
    Complexity, Vol. 7, No. 4. (14 August 2002), pp. 23-40.
    by Stephen E Harris, Bruce K Sawhill, Andrew Wuensche, Stuart Kauffman
    posted to network boolean by wnpx on 2007-01-21 22:01:15 as ** along with 2 people and 1 group camster eldan dbk-lab
  • Evolution, Interactions, and Biological Networks
    PLoS Biology, Vol. 5, No. 1. (1 January 2007), e11.
    by Joshua S Weitz, Philip N Benfey, Ned S Wingreen
    posted to toread network by wnpx on 2007-01-21 22:00:15 as ** along with 14 people and 1 group eldan aalibes cmmorel balajis cerkut jhatrimatri josepe timothee srfairclough hmk bootsy Ema bpcusack skumagai contact-id
  • Computational strategy for discovering druggable gene networks from genome-wide RNA expression profiles.
    Pac Symp Biocomput (2006), pp. 559-571.
    by S Imoto, Y Tamada, H Araki, K Yasuda, CG Print, SD Charnock-Jones, D Sanders, CJ Savoie, K Tashiro, S Kuhara, S Miyano
    posted to network gene expressiondata bayesian by wnpx on 2007-01-21 14:39:38 as ** along with 2 people eldan tardigrade
  • Bayesian Methods for Elucidating Genetic Regulatory Networks
    IEEE Intelligent Systems, Vol. 17, No. 2. (March 2002), pp. 37-43.
    by Alexander J Hartemink, David K Gifford, Tommi S Jaakkola, Richard A Young
    posted to network gene dt bayesian by wnpx on 2007-01-15 00:13:01 as **
  • Transcriptional Regulation by Competing Transcription Factor Modules
    PLoS Computational Biology, Vol. 2, No. 12. (1 December 2006), e164.
    by Rutger Hermsen, Sander Tans, Ten
    posted to gene module network regulation by wnpx on 2007-01-06 18:22:41 as ** along with 3 people nirfriedman zwang nklee
  • Rules for modeling signal-transduction systems.
    Sci STKE, Vol. 2006, No. 344. (17 July 2006)
    by WS Hlavacek, JR Faeder, ML Blinov, RG Posner, M Hucka, W Fontana
    posted to network signal by wnpx on 2006-12-08 15:41:17 as ** along with 3 people jjray eukfn josepe
  • Methods to reveal domain networks
    Drug Discovery Today, Vol. 10, No. 16. (15 August 2005), pp. 1111-1117.
    by Elena Santonico, Luisa Castagnoli, Gianni Cesareni
    posted to network by wnpx on 2006-12-08 15:40:57 as ** along with 3 people and 1 group eukfn cjeans gulkur Bioinformatics
  • Link prediction in relational data
    (2004)
    by B Taskar, M Wong, P Abbeel, D Koller
    posted to markov network prm probabilistic by wnpx on 2006-12-07 19:47:19 as ** along with 2 people donade roys
  • BNArray: an R package for constructing gene regulatory networks from microarray data by using Bayesian network.
    Bioinformatics (27 September 2006)
    by Xiaohui Chen, Ming Chen, Kaida Ning
    posted to bayesian bayesnet gene network r regulation by wnpx on 2006-11-18 18:09:29 as ** along with 6 people jyuh frohike jhatrimatri shigepong ramakris waszak
  • IntNetDB v1.0: An integrated protein-protein interaction network database generated by a probabilistic model
    BMC Bioinformatics, Vol. 7 (18 November 2006), 508.
    by Kai Xia, Dong Dong, Jing-Dong J Han
    posted to interaction network probabilistic protein by wnpx on 2006-11-18 18:08:37 as ** along with 3 people cdallett nedwards maralena
  • Visual setup of logical models of signaling and regulatory networks with ProMoT
    BMC Bioinformatics, Vol. 7 (17 November 2006), 506.
    by Julio Saez-Rodriguez, Sebastian Mirschel, Rebecca Hemenway, Steffen Klamt, Ernst D Gilles, Martin Ginkel
    posted to boolean modeling network now by wnpx on 2006-11-18 18:05:57 as **** along with 1 person dquest
  • Being Bayesian About Network Structure. A Bayesian Approach to Structure Discovery in Bayesian Networks
    Machine Learning, Vol. V50, No. 1. (1 January 2003), pp. 95-125.
    by Nir Friedman, Daphne Koller
    posted to bayesian network structure by wnpx on 2006-11-17 06:16:03 as **** along with 5 people and 1 group garyfeng Borelli chechetka quianominorleo naegele ReadingLab
  • Comparing gene expression networks in a multi-dimensional space to extract similarities and differences between organisms.
    Bioinformatics (9 March 2006)
    by Gaëlle Lelandais, Pierre Vincens, Anne Badel-Chagnon, Stéphane Vialette, Claude Jacq, Serge Hazout
    posted to expression gene network by wnpx on 2006-09-02 11:30:36 as ** along with 1 person and 1 group dpollard EisenLab
  • An effective structure learning method for constructing gene networks.
    Bioinformatics, Vol. 22, No. 11. (1 June 2006), pp. 1367-1374.
    by XW Chen, G Anantha, X Wang
    posted to bayesian gene learning network structure by wnpx on 2006-09-02 11:29:44 as ** along with 1 person ramakris
  • Inferring network mechanisms: the Drosophila melanogaster protein interaction network.
    Proc Natl Acad Sci U S A, Vol. 102, No. 9. (1 March 2005), pp. 3192-3197.
    by M Middendorf, E Ziv, CH Wiggins
    posted to inference interaction network protein by wnpx on 2006-08-24 18:46:19 as ** along with 3 people and 1 group lfriedl jaspervoskuilen iris_2001 kdl
  • Bridging structural biology and genomics: assessing protein interaction data with known complexes
    Trends in Genetics, Vol. 18, No. 10. (1 October 2002), pp. 529-536.
    by Aled M Edwards, Bart Kus, Ronald Jansen, Dov Greenbaum, Jack Greenblatt, Mark Gerstein
    posted to bayesian complex dt interaction network protein toread by wnpx on 2006-08-24 18:45:59 as *** along with 4 people and 1 group lfriedl reidy ruvido wilbur kdl
  • Local Learning in Probabilistic Networks with Hidden Variables
    (1995), pp. 1146-1152.
    by Stuart J Russell, John Binder, Daphne Koller, Keiji Kanazawa
    posted to learning network probabilistic by wnpx on 2006-08-24 18:37:38 as ** along with 3 people anon_pl wlyu2001 luispedro
  • Towards an integrated protein-protein interaction network: a relational markov network approach.
    J Comput Biol, Vol. 13, No. 2. (March 2006), pp. 145-164.
    by A Jaimovich, G Elidan, H Margalit, N Friedman
    posted to markov network prediction probabilistic protein proteininteraction by wnpx on 2006-08-24 18:36:29 as ** along with 5 people and 1 group lfriedl nirfriedman koller rsantana iris_2001 kdl
  • Interactome networks: the state of the science.
    Genome Biol, Vol. 7, No. 1. (2006)
    by GJ Warner, YA Adeleye, T Ideker
    posted to interactome network by wnpx on 2006-08-24 18:29:05 as ** along with 1 person koller
  • Extracting Gene Networks for Low-Dose Radiation Using Graph Theoretical Algorithms
    PLoS Computational Biology, Vol. 2, No. 7. (1 July 2006), e89.
    by Brynn H Voy, Jon A Scharff, Andy D Perkins, Arnold M Saxton, Bhavesh Borate, Elissa J Chesler, Lisa K Branstetter, Michael A Langston
    posted to gene graphtheory network by wnpx on 2006-08-05 22:26:36 as ** along with 2 people jiny jfr
  • N-body decomposition of bipartite networks
    (17 Oct 2005)
    by R Lambiotte, M Ausloos
    posted to network by wnpx on 2006-07-30 17:04:36 as * along with 2 people anon_pl abonchen
  • Estimating gene regulatory networks and protein-protein interactions of Saccharomyces cerevisiae from multiple genome-wide data.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by N Nariai, Y Tamada, S Imoto, S Miyano
    posted to network protein proteininteraction regulation yeast by wnpx on 2006-07-30 16:52:50 as ** along with 2 people noano koller
  • Efficient algorithms for detecting signaling pathways in protein interaction networks.
    J Comput Biol, Vol. 13, No. 2. (March 2006), pp. 133-144.
    by J Scott, T Ideker, RM Karp, R Sharan
    posted to interaction network pathway protein signaling by wnpx on 2006-07-30 16:47:42 as ** along with 4 people gurkanbebek koller iris_2001 carlk
  • A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules
    Science, Vol. 302, No. 5643. (10 October 2003), pp. 249-255.
    by Joshua M Stuart, Eran Segal, Daphne Koller, Stuart K Kim
    posted to gene module network by wnpx on 2006-07-30 16:45:34 as ** along with 19 people and 7 groups saket pengchy nolodie jeremymiller tharris dragonrez textoris lfriedl balajis nuke2005 maryee tardigrade opheliav neveaire macle raylim lp2 karfunkel vertikalist C. elegans / WormBase kdl Biostatistics Computational-Genomics Bioinformatics Neuroscience BTS-PT-AS-CS
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