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wnpx's modeling [38 articles]

当前文献位于 wnpx's 文献库 标签分类为 modeling. You can also see everyone's modeling.
  • Modelling biological processes using workflow and Petri Net models.
    Bioinformatics, Vol. 18, No. 6. (June 2002), pp. 825-837.
    by M Peleg, I Yeh, RB Altman
    posted to biology modeling net petri workflow by wnpx on 2008-01-27 19:38:01 as **
  • A Specification Language and a Framework for the Execution of Composite Models in Systems Biology
    Lecture Notes In Computer Science:Transactions on Computational Systems Biology VII, Vol. 4230 (2006), pp. 163-184.
    by Ofer Margoninski, Peter Saffrey, James Hetherington, Anthony Finkelstein, Anne Warner
    posted to dt language modeling sysbio by wnpx on 2007-08-10 10:00:38 as ** along with 3 people and 3 groups krissp carmaus dagmar dIEMoSIRIS MoSi-Rostock compneur
  • Limitations of quantitative gene regulation models: a case study.
    Genome Res, Vol. 13, No. 11. (November 2003), pp. 2391-2395.
    by PM Kim, B Tidor
    posted to dt modeling quantitative by wnpx on 2007-08-10 09:58:58 as ** along with 5 people Scis0000002 rklancer monod mmt lambda
  • Systems Biology Markup Language (SBML) Level 3 - Proposal: Model Composition Features
    (October 2003)
    by Andrew Finney
    posted to format modeling simulation xml by wnpx on 2007-08-10 09:45:36 as ** along with 1 person and 2 groups dagmar dIEMoSIRIS compneur
  • Flexible integration of XML into modeling and simulation systems
    (December 2005), pp. 1813-1820.
    by Mathias Röhl, Adelinde M Uhrmacher
    edited by ME Kuhl, NM Steiger, FB Armstrong, JA Joines
    posted to modeling simulation xml by wnpx on 2007-08-10 09:45:15 as ** along with 1 person and 2 groups dagmar dIEMoSIRIS compneur
  • notes Potential modeling and simulation applications of the web ontology language - OWL
    (2004), pp. 265-270.
    by Lee Lacy, William Gerber
    posted to dt modeling ontology owl semanticweb simulation by wnpx on 2007-08-10 09:44:06 as **
  • notes Investigating ontologies for simulation modeling
    Simulation Symposium, 2004. Proceedings. 37th Annual (2004), pp. 55-63.
    by JA Miller, GT Baramidze, AP Sheth, PA Fishwick
    posted to dt modeling ontology owl semanticweb simulation by wnpx on 2007-08-10 09:42:41 as **
  • Ontologies for modeling and simulation: issues and approaches
    Simulation Conference, 2004. Proceedings of the 2004 Winter, Vol. 1 (2004)
    by PA Fishwick, JA Miller
    posted to dt modeling ontology semanticweb simulation by wnpx on 2007-08-10 09:39:35 as **
  • Ontologies for Modeling and Simulation: An Initial Framework
    by John A Miller, Gregory T Baramidze, Amit P Sheth, Gregory A Silver, Paul A Fishwick
    posted to dt dt-model modeling ontology simulation by wnpx on 2007-08-10 09:34:56 as ** along with 2 people and 3 groups jmuhlich dagmar SorgerLab dIEMoSIRIS compneur
  • Probabilistic modeling and machine learning in structural and systems biology.
    BMC Bioinformatics, Vol. 8 Suppl 2 (2007)
    by S Kaski, J Rousu, E Ukkonen
    posted to dt machinelearning modeling new probabilistic sysbio toread by wnpx on 2007-06-28 09:47:27 as ***** along with 1 person shigepong
  • Automatic generation of cellular reaction networks with Moleculizer 1.0
    Nature Biotechnology, Vol. 23, No. 1. (06 January 2005), pp. 131-136.
    by Larry Lok, Roger Brent
    posted to complex modeling protein simulation stochastic by wnpx on 2007-04-01 11:34:50 as ** along with 2 people rklancer oelemento
  • Quantitative modeling of biochemical networks.
    In Silico Biol, Vol. 1, No. 1. (1998), pp. 39-53.
    by R Hofestädt, S Thelen
    posted to modeling petrinet by wnpx on 2007-04-01 11:32:23 as **
  • 'On-the-fly' or 'generate-first' modeling?
    Nature Biotechnology, Vol. 23, No. 11., pp. 1344-1345.
    by Michael L Blinov, James R Faeder, Jin Yang, Byron Goldstein, William S Hlavacek
    posted to modeling sysbio toread by wnpx on 2007-04-01 10:25:41 as **
  • Iterative approach to model identification of biological networks.
    BMC Bioinformatics, Vol. 6 (2005), 155.
    by KG Gadkar, R Gunawan, Doyle
    posted to modeling network sysbio by wnpx on 2007-03-22 21:48:58 as ** along with 1 person jrbanga
  • Building with a scaffold: emerging strategies for high- to low-level cellular modeling.
    Trends Biotechnol, Vol. 21, No. 6. (June 2003), pp. 255-262.
    by T Ideker, D Lauffenburger
    posted to modeling sysbio toread by wnpx on 2007-03-21 19:15:59 as *** along with 2 people and 2 groups mhucka roland_ewald dIEMoSIRIS MoSi-Rostock
  • Dynamic modelling and analysis of biochemical networks: mechanism-based models and model-based experiments.
    Brief Bioinform (14 November 2006)
    by Natal A W A van Riel
    posted to dt modeling ode by wnpx on 2007-03-18 21:35:16 as ** along with 2 people and 1 group raiyar fishtank steinmetzlab
  • Strategies for dealing with incomplete information in the modeling of molecular interaction networks.
    Brief Bioinform (26 September 2006)
    by Hidde de Jong, Delphine Ropers
    posted to dt incompleteinformation modeling by wnpx on 2007-03-18 21:33:25 as ** along with 2 people aswin StarStrider
  • Iterative approach to model identification of biological networks.
    BMC Bioinformatics, Vol. 6 (20 June 2005)
    by KG Gadkar, R Gunawan, FJ Doyle
    posted to dynamic modeling network by wnpx on 2007-02-26 22:16:16 as ** along with 4 people carlk drmabuse eweaver jrbanga
  • Optimal sampling time selection for parameter estimation in dynamic pathway modeling
    BioSystems, Vol. 75, No. 1-3. (2004), pp. 43-55.
    by Z Kutalik, KH Cho, O Wolkenhauer
    posted to dynamic modeling parameterestimation by wnpx on 2007-02-26 22:15:34 as ** along with 1 person jrbanga
  • Sparse graphical Gaussian modeling of the isoprenoid gene network in Arabidopsis thaliana.
    Genome Biol, Vol. 5, No. 11. (2004)
    by A Wille, P Zimmermann, E Vranová, A Fürholz, O Laule, S Bleuler, L Hennig, A Prelic, P von Rohr, L Thiele, E Zitzler, W Gruissem, P Bühlmann
    posted to sparse network modeling graphical gene gaussian by wnpx on 2007-02-05 17:56:50 as **
  • Modeling transcriptional control in gene networks--methods, recent results, and future directions.
    Bull Math Biol, Vol. 62, No. 2. (March 2000), pp. 247-292.
    by P Smolen, DA Baxter, JH Byrne
    posted to transcription network modeling gene by wnpx on 2007-02-05 17:55:11 as ** along with 1 person klo
  • Whole-cell simulation: a grand challenge of the 21st century.
    Trends Biotechnol, Vol. 19, No. 6. (June 2001), pp. 205-210.
    by M Tomita
    posted to simulation modeling e-cell by wnpx on 2007-01-21 22:06:56 as ** along with 4 people Doug josepe fishtank phoenixzxl
  • Toward large-scale modeling of the microbial cell for computer simulation.
    J Biotechnol, Vol. 113, No. 1-3. (30 September 2004), pp. 281-294.
    by N Ishii, M Robert, Y Nakayama, A Kanai, M Tomita
    posted to toread simulation modeling dt by wnpx on 2007-01-21 22:06:13 as ** along with 8 people and 3 groups csanford eldan Doug cottrell livingthingdan josepe fishtank roland_ewald livingthing dIEMoSIRIS MoSi-Rostock
  • Computational modelling, explicit mathematical treatments, and scientific explanation
    (1 August 2006), pp. 520-526.
    by John Bryden, Jason Noble
    edited by Luis M Rocha, Larry S Yaeger, Mark A Bedau, Dario Floreano, Robert L Goldstone, Alessandro Vespignani
    posted to toread modeling by wnpx on 2007-01-21 22:02:05 as ** along with 1 person eldan
  • Modeling and simulation of genetic regulatory systems: a literature review.
    Journal of Computational Biology, Vol. 9, No. 1. (2002), pp. 67-103.
    by Hidde de Jong
    posted to simulation modeling dt by wnpx on 2007-01-15 00:15:01 as ** along with 17 people and 4 groups cswinburne ggallone softsimu eldan tmmurali bayesian balicea Happybene kengg noano sstoma josepe dagmar jo_davies roys maburkitt phoenixzxl Jarman Lab VirtualPlants Plantandetc compneur
  • Visual setup of logical models of signaling and regulatory networks with ProMoT
    BMC Bioinformatics, Vol. 7 (17 November 2006), 506.
    by Julio Saez-Rodriguez, Sebastian Mirschel, Rebecca Hemenway, Steffen Klamt, Ernst D Gilles, Martin Ginkel
    posted to boolean modeling network now by wnpx on 2006-11-18 18:05:57 as **** along with 1 person dquest
  • The SBML ODE Solver Library: a native API for symbolic and fast numerical analysis of reaction networks.
    Bioinformatics (9 March 2006)
    by Rainer Machné, Andrew Finney, Stefan Müller, James Lu, Stefanie Widder, Christoph Flamm
    posted to dynamic library modeling ode sbml software solver by wnpx on 2006-09-02 11:28:31 as ** along with 4 people eckart_bindewald ilh mhucka josepe
  • Avoiding model selection bias in small-sample genomic datasets
    Bioinformatics, Vol. 22, No. 10. (15 May 2006), pp. 1245-1250.
    by Daniel Berrar, Ian Bradbury, Werner Dubitzky
    posted to modeling by wnpx on 2006-09-02 11:27:32 as **
  • Modeling of cell signaling pathways in macrophages by semantic networks.
    BMC Bioinformatics, Vol. 5 (19 October 2004)
    by M Hsing, JL Bellenson, C Shankey, A Cherkasov
    posted to modeling pathway semanticnetwork signaling by wnpx on 2006-07-20 15:55:57 as **
  • A sense of life: computational and experimental investigations with models of biochemical and evolutionary processes.
    OMICS, Vol. 7, No. 3. (2003), pp. 253-268.
    by B Mishra, RS Daruwala, Y Zhou, N Ugel, A Policriti, M Antoniotti, S Paxia, M Rejali, A Rudra, V Cherepinsky, N Silver, W Casey, C Piazza, M Simeoni, P Barbano, M Spivak, J Feng, O Gill, M Venkatesh, F Cheng, B Sun, I Ioniata, T Anantharaman, EJ Hubbard, A Pnueli, D Harel, V Chandru, R Hariharan, M Wigler, F Park, SC Lin, Y Lazebnik, F Winkler, CR Cantor, A Carbone, M Gromov
    posted to modeling by wnpx on 2006-02-24 15:28:10 as ** along with 1 person imouthesmp
  • The little b programming language
    posted to bio lisp littleb modeling by wnpx on 2006-01-31 10:33:18 as **
  • Cell Modeling using Agent-based Formalisms
    by Kenneth Webb, Tony White
    posted to agent bio modeling systemsbiology by wnpx on 2006-01-29 19:46:33 as **
  • Reverse engineering gene networks: integrating genetic perturbations with dynamical modeling.
    Proc Natl Acad Sci U S A, Vol. 100, No. 10. (13 May 2003), pp. 5944-5949.
    by J Tegner, MK Yeung, J Hasty, JJ Collins
    posted to dynamical gene modeling network perturbation reverse-engineering by wnpx on 2006-01-09 21:34:09 as ** along with 5 people and 3 groups rklancer aheilbut rhem1224 rubendrr madhadron TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells
  • A benchmark for methods in reverse engineering and model discrimination: problem formulation and solutions.
    Genome Res, Vol. 14, No. 9. (September 2004), pp. 1773-1785.
    by A Kremling, S Fischer, K Gadkar, FJ Doyle, T Sauter, E Bullinger, F Allgöwer, ED Gilles
    posted to modeling reverse-engineering by wnpx on 2006-01-09 21:32:29 as ** along with 2 people and 2 groups rhem1224 jrbanga TCR_Signaling SysbioMPI-TCells
  • Mathematics is biology's next microscope, only better; biology is mathematics' next physics, only better.
    PLoS Biol, Vol. 2, No. 12. (December 2004)
    by JE Cohen
    posted to dt general modeling sysbio by wnpx on 2006-01-09 06:48:53 as ** along with 36 people and 13 groups beete rklancer BioGeek betainverse korakot cito pete hamish karbak A_Olympia beccaf22 rmj001 devin dsquared nozeresc DineshGaitonde macowell marimo bpb grzegorz cmmorel bayesian piscinero marcius eckart_bindewald eweaver dullhunk caporaso mmt xinian jrbanga bpcusack quianominorleo jn221 grahamc joseph_x_zhou Philosophy_of_Information Blog_and_Wiki_Research Fluid-Mechanics-and-Thermal-Science-Research MathBio EisenLab Computational_Systems_Biology XMLDataManagement biomedical-nlp BUiGEM BioinfoCIPF SGU-CIPF bioNetwork_sysBio biophysics
  • From signatures to models: understanding cancer using microarrays.
    Nat Genet, Vol. 37 Suppl (June 2005)
    by E Segal, N Friedman, N Kaminski, A Regev, D Koller
    posted to cancer expressiondata modeling by wnpx on 2006-01-05 22:23:17 as ***** along with 9 people and 1 group cswinburne aalibes textoris troels_marstrand nirfriedman rdiaz sampath shikin srp33 GeneGo
  • Systems modeling: a pathway to drug discovery.
    Curr Opin Chem Biol, Vol. 9, No. 4. (August 2005), pp. 400-406.
    by P Rajasethupathy, SJ Vayttaden, US Bhalla
    posted to dt general modeling sysbio toread by wnpx on 2005-12-30 15:03:10 as ** along with 4 people snuppepuppan kuhn mmt jdiggans
  • SYSTEMS BIOLOGY: Less Is More in Modeling Large Genetic Networks
    Science, Vol. 310, No. 5747. (21 October 2005), pp. 449-451.
    by Stefan Bornholdt
    posted to dt general modeling networks sysbio toread by wnpx on 2005-12-30 14:52:02 as *** along with 7 people and 1 group jmenche snuppepuppan eldan jmeppley balajis biosv fishtank Bioinformatics
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