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wnpx's gene [54 articles]

当前文献位于 wnpx's 文献库 标签分类为 gene. You can also see everyone's gene.
  • Exploring the independence of gene regulatory modules
    (17-18 June 2006)
    by Janne Nikkilä, Antti Honkela, Samuel Kaski
    posted to gene independence network regulation by wnpx on 2007-07-27 17:36:46 as **
  • A New Approach to Analyzing Gene Expression Time Series Data
    by Ziv B Joseph, Georg Gerber, David K Gifford, Tommi S Jaakkola, Et
    posted to expression gene timeseries by wnpx on 2007-06-11 07:20:27 as ** along with 1 person dimatura
  • Module Networks: Discovering Regulatory Modules and their Condition Specific Regulators from Gene Expression Data
    by Eran Segal, Michael Shapira, Aviv Regev, Dana Pe'er, David Botstein, Daphne Koller, Nir Friedman
    posted to bayesian gene modeule network regulation by wnpx on 2007-06-11 07:20:10 as ** along with 2 people dimatura lp2
  • A Markov Random Field Model for Network-based Analysis of Genomic Data.
    Bioinformatics (5 May 2007)
    by Zhi Wei, Hongzhe Li
    posted to gene markov markovnets mrf network projdt by wnpx on 2007-05-22 10:43:54 as *** along with 2 people iris_2001 ptrobajo
  • Systematic pathway analysis using high-resolution fitness profiling of combinatorial gene deletions
    Nature Genetics, Vol. 39, No. 2. (07 January 2007), pp. 199-206.
    by Robert P St Onge, Ramamurthy Mani, Julia Oh, Michael Proctor, Eula Fung, Ronald W Davis, Corey Nislow, Frederick P Roth, Guri Giaever
    posted to deletion gene network by wnpx on 2007-03-22 21:50:36 as ** along with 5 people aalibes tmmurali Ao_Li2007 gwcarter raiyar
  • Importance of input perturbations and stochastic gene expression in the reverse engineering of genetic regulatory networks: insights from an identifiability analysis of an in silico network.
    Genome Res, Vol. 13, No. 11. (November 2003), pp. 2396-2405.
    by DE Zak, GE Gonye, JS Schwaber, FJ Doyle
    posted to expression gene inference perturbation by wnpx on 2007-03-22 21:46:05 as ** along with 5 people ryang jrbanga bertelsen lukaswindhager aheilbut
  • How to infer gene networks from expression profiles
    Mol Syst Biol, Vol. 3 (13 February 2007)
    by Mukesh Bansal, Vincenzo Belcastro, Alberto Ambesi-Impiombato, Diego di Bernardo
    posted to expression gene inference network by wnpx on 2007-03-17 11:37:39 as ** along with 18 people and 3 groups ggallone ptrobajo druvus gabe_rosser cswinburne jfr eckart_bindewald nickluscombe kengg mikaelhuss jrbanga BIBLIOma RockHI lp2 natstreet heliopais mariakmejia tmmurali Jarman Lab EBI-regulation Plantandetc
  • notes Modelling gene expression data using dynamic Bayesian networks
    (1999)
    by Kevin Murphy, Saira Mian
    posted to bayesian dbn dt expression expressiondata gene network by wnpx on 2007-02-05 18:04:33 as ** along with 1 person dimatura
  • A Bayesian connectivity-based approach to constructing probabilistic gene regulatory networks.
    Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 2918-2927.
    by X Zhou, X Wang, R Pal, I Ivanov, M Bittner, ER Dougherty
    posted to reconstruction network inference gene bayesian by wnpx on 2007-02-05 18:00:21 as **
  • Sparse graphical Gaussian modeling of the isoprenoid gene network in Arabidopsis thaliana.
    Genome Biol, Vol. 5, No. 11. (2004)
    by A Wille, P Zimmermann, E Vranová, A Fürholz, O Laule, S Bleuler, L Hennig, A Prelic, P von Rohr, L Thiele, E Zitzler, W Gruissem, P Bühlmann
    posted to sparse network modeling graphical gene gaussian by wnpx on 2007-02-05 17:56:50 as **
  • Modeling transcriptional control in gene networks--methods, recent results, and future directions.
    Bull Math Biol, Vol. 62, No. 2. (March 2000), pp. 247-292.
    by P Smolen, DA Baxter, JH Byrne
    posted to transcription network modeling gene by wnpx on 2007-02-05 17:55:11 as ** along with 1 person klo
  • Inferring dynamic architecture of cellular networks using time series of gene expression, protein and metabolite data.
    Bioinformatics, Vol. 20, No. 12. (12 August 2004), pp. 1877-1886.
    by E Sontag, A Kiyatkin, BN Kholodenko
    posted to timeseries reconstruction proteindata metabolitedata inference getwork gene expression dynamic by wnpx on 2007-02-05 17:53:38 as ** along with 4 people and 3 groups camster dbk mrm smgomez streptomyces dbk-lab GomezLab
  • Reconstructing biological networks using conditional correlation analysis.
    Bioinformatics, Vol. 21, No. 6. (March 2005), pp. 765-773.
    by JJ Rice, Y Tu, G Stolovitzky
    posted to reverseengineering regulation reconstruction network inference gene correlation by wnpx on 2007-02-05 17:48:37 as **
  • Probabilistic representation of gene regulatory networks.
    Bioinformatics, Vol. 20, No. 14. (22 September 2004), pp. 2258-2269.
    by L Mao, H Resat
    posted to regulation network gene by wnpx on 2007-02-05 17:46:39 as **
  • Reconciling gene expression data with known genome-scale regulatory network structures.
    Genome Res, Vol. 13, No. 11. (November 2003), pp. 2423-2434.
    by MJ Herrgård, MW Covert, BØ Palsson
    posted to network motif gene expression by wnpx on 2007-02-05 17:43:35 as ** along with 2 people opheliav tvdbulck
  • Genetic network inference: from co-expression clustering to reverse engineering.
    Bioinformatics, Vol. 16, No. 8. (August 2000), pp. 707-726.
    by P D'haeseleer, S Liang, R Somogyi
    posted to reverseengineering network gene by wnpx on 2007-02-05 17:40:58 as ** along with 3 people nolodie bayesian qfwills
  • Transcriptional networks: reverse-engineering gene regulation on a global scale.
    Curr Opin Microbiol, Vol. 7, No. 6. (December 2004), pp. 638-646.
    by G Chua, MD Robinson, Q Morris, TR Hughes
    posted to transcription review reverseengineering regulation network gene by wnpx on 2007-02-05 17:38:34 as ** along with 2 people and 1 group nickluscombe koller EBI-regulation
  • Transcriptional Regulatory Networks in Saccharomyces cerevisiae
    Science, Vol. 298, No. 5594. (October 2002), pp. 799-804.
    by Tong I Lee, Nicola J Rinaldi, François Robert, Duncan T Odom, Ziv Bar-Joseph, Georg K Gerber, Nancy M Hannett, Christopher T Harbison, Craig M Thompson, Itamar Simon, Julia Zeitlinger, Ezra G Jennings, Heather L Murray, Benjamin D Gordon, Bing Ren, John J Wyrick, Jean-Bosco Tagne, Thomas L Volkert, Ernest Fraenkel, David K Gifford, Richard A Young
    posted to transcription regulation network gene by wnpx on 2007-02-01 17:19:31 as ** along with 1 person eldan
  • Integrating transcription factor binding site information with gene expression datasets.
    Bioinformatics (24 November 2006)
    by Ian B B Jeffery, Stephen F F Madden, Paul A A McGettigan, Guy Perrière, Aedín C C Culhane, Desmond G G Higgins
    posted to gene expressiondata by wnpx on 2007-01-21 21:18:25 as ** along with 4 people and 1 group jyuh dpollard gpalidwor SeungjoonOh EisenLab
  • Computational strategy for discovering druggable gene networks from genome-wide RNA expression profiles.
    Pac Symp Biocomput (2006), pp. 559-571.
    by S Imoto, Y Tamada, H Araki, K Yasuda, CG Print, SD Charnock-Jones, D Sanders, CJ Savoie, K Tashiro, S Kuhara, S Miyano
    posted to network gene expressiondata bayesian by wnpx on 2007-01-21 14:39:38 as ** along with 2 people eldan tardigrade
  • Bayesian Methods for Elucidating Genetic Regulatory Networks
    IEEE Intelligent Systems, Vol. 17, No. 2. (March 2002), pp. 37-43.
    by Alexander J Hartemink, David K Gifford, Tommi S Jaakkola, Richard A Young
    posted to network gene dt bayesian by wnpx on 2007-01-15 00:13:01 as **
  • Transcriptional Regulation by Competing Transcription Factor Modules
    PLoS Computational Biology, Vol. 2, No. 12. (1 December 2006), e164.
    by Rutger Hermsen, Sander Tans, Ten
    posted to gene module network regulation by wnpx on 2007-01-06 18:22:41 as ** along with 3 people nirfriedman zwang nklee
  • BNArray: an R package for constructing gene regulatory networks from microarray data by using Bayesian network.
    Bioinformatics (27 September 2006)
    by Xiaohui Chen, Ming Chen, Kaida Ning
    posted to bayesian bayesnet gene network r regulation by wnpx on 2006-11-18 18:09:29 as ** along with 6 people jyuh frohike jhatrimatri shigepong ramakris waszak
  • Comparing gene expression networks in a multi-dimensional space to extract similarities and differences between organisms.
    Bioinformatics (9 March 2006)
    by Gaëlle Lelandais, Pierre Vincens, Anne Badel-Chagnon, Stéphane Vialette, Claude Jacq, Serge Hazout
    posted to expression gene network by wnpx on 2006-09-02 11:30:36 as ** along with 1 person and 1 group dpollard EisenLab
  • An effective structure learning method for constructing gene networks.
    Bioinformatics, Vol. 22, No. 11. (1 June 2006), pp. 1367-1374.
    by XW Chen, G Anantha, X Wang
    posted to bayesian gene learning network structure by wnpx on 2006-09-02 11:29:44 as ** along with 1 person ramakris
  • Extracting Gene Networks for Low-Dose Radiation Using Graph Theoretical Algorithms
    PLoS Computational Biology, Vol. 2, No. 7. (1 July 2006), e89.
    by Brynn H Voy, Jon A Scharff, Andy D Perkins, Arnold M Saxton, Bhavesh Borate, Elissa J Chesler, Lisa K Branstetter, Michael A Langston
    posted to gene graphtheory network by wnpx on 2006-08-05 22:26:36 as ** along with 2 people jiny jfr
  • A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules
    Science, Vol. 302, No. 5643. (10 October 2003), pp. 249-255.
    by Joshua M Stuart, Eran Segal, Daphne Koller, Stuart K Kim
    posted to gene module network by wnpx on 2006-07-30 16:45:34 as ** along with 19 people and 7 groups saket pengchy nolodie jeremymiller tharris dragonrez textoris lfriedl balajis nuke2005 maryee tardigrade opheliav neveaire macle raylim lp2 karfunkel vertikalist C. elegans / WormBase kdl Biostatistics Computational-Genomics Bioinformatics Neuroscience BTS-PT-AS-CS
  • Reverse engineering of genetic networks with Bayesian networks.
    Biochem Soc Trans, Vol. 31, No. Pt 6. (December 2003), pp. 1516-1518.
    by D Husmeier
    posted to bayesian gene network by wnpx on 2006-07-26 20:56:45 as ****
  • Gene network inference from incomplete expression data: transcriptional control of hematopoietic commitment.
    Bioinformatics, Vol. 22, No. 6. (15 March 2006), pp. 731-738.
    by K Missal, MA Cross, D Drasdo
    posted to bayesian gene network by wnpx on 2006-07-26 20:56:21 as **
  • A Bayesian regression approach to the inference of regulatory networks from gene expression data.
    Bioinformatics, Vol. 21, No. 14. (15 July 2005), pp. 3131-3137.
    by S Rogers, M Girolami
    posted to bayesian expression gene network regression regulation by wnpx on 2006-07-26 20:55:22 as **
  • Empirical bayes estimation of a sparse vector of gene expression changes.
    Stat Appl Genet Mol Biol, Vol. 4, No. 1. (2005)
    by S Erickson, C Sabatti
    posted to bayes expression gene mcmc by wnpx on 2006-07-26 20:54:58 as **
  • Biomarker discovery in microarray gene expression data with Gaussian processes.
    Bioinformatics, Vol. 21, No. 16. (15 August 2005), pp. 3385-3393.
    by W Chu, Z Ghahramani, F Falciani, DL Wild
    posted to expression gaussianprocess gene by wnpx on 2006-07-26 20:54:36 as ** along with 2 people kentsis blackm0k
  • Using protein-protein interactions for refining gene networks estimated from microarray data by Bayesian networks.
    Pac Symp Biocomput (2004), pp. 336-347.
    by N Nariai, S Kim, S Imoto, S Miyano
    posted to bayesian gene interaction network protein by wnpx on 2006-07-26 20:54:15 as ** along with 2 people noano Borelli
  • Gene networks as a tool to understand transcriptional regulation.
    Genet Mol Res, Vol. 5, No. 1. (31 March 2006), pp. 254-268.
    by DF Veiga, FF Vicente, G Bastos
    posted to bayesian gene network reconstruction regulation by wnpx on 2006-07-26 20:51:28 as **
  • Discovering molecular pathways from protein interaction and gene expression data.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by E Segal, H Wang, D Koller
    posted to bio expressiondata gene interactiondata learning network pathway protein structure by wnpx on 2006-05-28 15:49:04 as ** along with 6 people and 1 group jfr lfriedl noano bhaddow edwardmorrissey jiny kdl
  • STOCHASTICITY IN GENE EXPRESSION: FROM THEORIES TO PHENOTYPES
    Nat Rev Genet, Vol. 6, No. 6. (June 2005), pp. 451-464.
    by Mads K[aelig]rn, Timothy C Elston, William J Blake, James J Collins
    posted to expression gene stochasticity by wnpx on 2006-04-18 14:40:10 as ** along with 4 people ccots tabu balabu timflutre
  • Module networks: identifying regulatory modules and their condition-specific regulators from gene expression data.
    Nat Genet, Vol. 34, No. 2. (June 2003), pp. 166-176.
    by E Segal, M Shapira, A Regev, D Pe'er, D Botstein, D Koller, N Friedman
    posted to data expression gene module networks by wnpx on 2006-04-18 14:38:44 as ** along with 18 people and 1 group cswinburne ggallone ealloza orzenil tuck bayesian tabu koller olympos fishtank dimatura karfunkel roys pkm dragonrez tvdbulck chrisamiller aviad_work Jarman Lab
  • Reconstruction of gene networks using Bayesian learning and manipulation experiments
    Bioinformatics, Vol. 20, No. 17. (22 November 2004), pp. 2934-2942.
    by Iosifina Pournara, Lorenz Wernisch
    posted to bayesian experimentaldata gene network reconstruction by wnpx on 2006-04-18 14:28:58 as ** along with 4 people and 2 groups czeller lfriedl aleks Yumyai kdl Compilers
  • Growing Bayesian network models of gene networks from seed genes.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by JM Peña, J Björkegren, J Tegnér
    posted to bayesian bayesnet gene learning network by wnpx on 2006-02-24 15:08:42 as **** along with 5 people and 1 group abhik imouthesmp ramakris naegele heliopais ic4
  • Utilizing evolutionary information and gene expression data for estimating gene networks with bayesian network models.
    J Bioinform Comput Biol, Vol. 3, No. 6. (December 2005), pp. 1295-1313.
    by Y Tamada, H Bannai, S Imoto, T Katayama, M Kanehisa, S Miyano
    posted to bayes bayesian bayesnet gene network by wnpx on 2006-02-24 14:51:33 as ** along with 1 person abhik
  • Qualitative analysis of gene networks.
    Pac Symp Biocomput (1998), pp. 77-88.
    by D Thieffry, R Thomas
    posted to analysis gene network regulatio stability by wnpx on 2006-01-30 13:57:46 as ** along with 2 people holan tabu
  • Development of a system for the inference of large scale genetic networks.
    Pac Symp Biocomput (2001), pp. 446-458.
    by Y Maki, D Tominaga, M Okamoto, S Watanabe, Y Eguchi
    posted to bayesian dbn gene inference network by wnpx on 2006-01-30 13:50:59 as **
  • Reverse engineering gene networks: integrating genetic perturbations with dynamical modeling.
    Proc Natl Acad Sci U S A, Vol. 100, No. 10. (13 May 2003), pp. 5944-5949.
    by J Tegner, MK Yeung, J Hasty, JJ Collins
    posted to dynamical gene modeling network perturbation reverse-engineering by wnpx on 2006-01-09 21:34:09 as ** along with 5 people and 3 groups rklancer aheilbut rhem1224 rubendrr madhadron TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells
  • Reverse engineering gene networks using singular value decomposition and robust regression.
    Proc Natl Acad Sci U S A, Vol. 99, No. 9. (30 April 2002), pp. 6163-6168.
    by MK Yeung, J Tegnér, JJ Collins
    posted to gene network regression reverse-engineering svd by wnpx on 2006-01-09 21:33:24 as ** along with 4 people and 3 groups rklancer dragonrez rhem1224 rubendrr TCR_Signaling cytoskeleton-and-afm SysbioMPI-TCells
  • Interpreting patterns of gene expression with self-organizing maps: Methods and application to hematopoietic differentiation -- Tamayo et al. 96 (6): 2907 -- Proceedings of the National Academy of Sciences
    Proc Natl Acad Sci U S A, Vol. 96, No. 6. (16 March 1999), pp. 2907-2912.
    by Pablo Tamayo, Donna Slonim, Jill Mesirov, Qing Zhudagger, Sutisak Kitareewandagger, Ethan Dmitrovskydagger, Eric S Lander, Todd R Golub
    posted to expression expressiondata gene som by wnpx on 2006-01-05 22:45:10 as **
  • Computational discovery of gene modules and regulatory networks.
    Nat Biotechnol, Vol. 21, No. 11. (November 2003), pp. 1337-1342.
    by Z Bar-Joseph, GK Gerber, TI Lee, NJ Rinaldi, JY Yoo, F Robert, DB Gordon, E Fraenkel, TS Jaakkola, RA Young, DK Gifford
    posted to gene module network regulation by wnpx on 2006-01-03 18:45:33 as ** along with 12 people and 1 group ggrot dragonrez bayesian nickluscombe koller frohike karfunkel roys dquest balicea carlk tvdbulck EBI-regulation
  • Rich probabilistic models for gene expression.
    Bioinformatics, Vol. 17 Suppl 1 (2001)
    by E Segal, B Taskar, A Gasch, N Friedman, D Koller
    posted to clustering expression gene probabilistic by wnpx on 2006-01-03 18:44:03 as ** along with 3 people and 1 group lfriedl balicea frohike kdl
  • Validation and refinement of gene-regulatory pathways on a network of physical interactions.
    Genome Biol, Vol. 6, No. 7. (2005)
    by CH Yeang, HC Mak, S McCuine, C Workman, T Jaakkola, T Ideker
    posted to gene knockoutdata network regulation by wnpx on 2006-01-03 06:14:09 as ** along with 14 people and 1 group kaarsinogen isimpson hplatero snuppepuppan abhik tmmurali textoris noano koller ccr cdppublications AlexanderPico carlk jago CDP
  • From gene networks to gene function.
    Genome Res, Vol. 13, No. 12. (December 2003), pp. 2568-2576.
    by T Schlitt, K Palin, J Rung, S Dietmann, M Lappe, E Ukkonen, A Brazma
    posted to gene network by wnpx on 2006-01-02 16:24:24 as ** along with 2 people and 1 group lfriedl opheliav kdl
  • Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks.
    Pac Symp Biocomput (2001), pp. 422-433.
    by AJ Hartemink, DK Gifford, TS Jaakkola, RA Young
    posted to bayesian bayesnet bioinformatics gene network regulation by wnpx on 2006-01-02 16:18:34 as **** along with 2 people brl noano
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