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wnpx's library [542 articles]

最近录入 wnpx's ordered by to_read.
  • Probabilistic modeling and machine learning in structural and systems biology.
    BMC Bioinformatics, Vol. 8 Suppl 2 (2007)
    by S Kaski, J Rousu, E Ukkonen
    posted to dt machinelearning modeling new probabilistic sysbio toread by wnpx on 2007-06-28 09:47:27 as ***** along with 1 person shigepong
  • Systems biology: a brief overview.
    Science, Vol. 295, No. 5560. (1 March 2002), pp. 1662-1664.
    by Hiroaki Kitano
    posted to systemsbiology sysbio sec-background-sysbio review overview dt by wnpx on 2006-01-31 10:54:09 as ***** along with 22 people and 6 groups reyez softsimu irenas Yanno Borelli biosv shivakumar3_14 dgront kehan cconboy mmt margaritis grahamc roland_ewald carmaus jdiezperezj maburkitt mertnuhoglu edvin lenov soramame_0518 nsamways dbk-lab biodiversity_conservation Bioinformatics GrassBase dIEMoSIRIS MoSi-Rostock
  • From signatures to models: understanding cancer using microarrays.
    Nat Genet, Vol. 37 Suppl (June 2005)
    by E Segal, N Friedman, N Kaminski, A Regev, D Koller
    posted to cancer expressiondata modeling by wnpx on 2006-01-05 22:23:17 as ***** along with 9 people and 1 group cswinburne aalibes textoris troels_marstrand nirfriedman rdiaz sampath shikin srp33 GeneGo
  • notes Whole-istic Biology
    Science, Vol. 295, No. 5560. (1 March 2002), 1661.
    by Lisa Chong, Bryan L Ray
    posted to background sysbio toread by wnpx on 2007-02-05 18:46:40 as **** along with 1 person margaritis
  • Visual setup of logical models of signaling and regulatory networks with ProMoT
    BMC Bioinformatics, Vol. 7 (17 November 2006), 506.
    by Julio Saez-Rodriguez, Sebastian Mirschel, Rebecca Hemenway, Steffen Klamt, Ernst D Gilles, Martin Ginkel
    posted to boolean modeling network now by wnpx on 2006-11-18 18:05:57 as **** along with 1 person dquest
  • Being Bayesian About Network Structure. A Bayesian Approach to Structure Discovery in Bayesian Networks
    Machine Learning, Vol. V50, No. 1. (1 January 2003), pp. 95-125.
    by Nir Friedman, Daphne Koller
    posted to bayesian network structure by wnpx on 2006-11-17 06:16:03 as **** along with 5 people and 1 group garyfeng Borelli chechetka quianominorleo naegele ReadingLab
  • Relational Dynamic Bayesian Networks
    Journal of Artificial Intelligence Research, Vol. 24 (2005), pp. 759-797.
    by Sumit Sanghai, Pedro Domingos, Daniel Weld
    posted to bayesian dbn relational by wnpx on 2006-07-28 13:03:13 as ****
  • WinBUGS – A Bayesian modelling framework: Concepts, structure, and extensibility
    Statistics and Computing, Vol. 10, No. 4. (October 2000), pp. 325-337.
    by David J Lunn, Andrew Thomas, Nicky Best, David Spiegelhalter
    posted to bayesian implementation inference by wnpx on 2006-07-28 12:48:44 as ****
  • VIBES: A Variational Inference Engine for Bayesian Networks
    (2002)
    by Christopher M Bishop, David Spiegelhalter, John Winn
    posted to bayesian implementation inference variational variationalbayes by wnpx on 2006-07-28 12:46:46 as ****
  • Reverse engineering of genetic networks with Bayesian networks.
    Biochem Soc Trans, Vol. 31, No. Pt 6. (December 2003), pp. 1516-1518.
    by D Husmeier
    posted to bayesian gene network by wnpx on 2006-07-26 20:56:45 as ****
  • Graphical models for discovering knowledge
    (1995), pp. 59-83.
    by Wray L Buntine
    edited by UM Fayyad, Piatetsky G Shapiro, P Smyth, RS Uthurasamy
    posted to bayesian graphicalmodels by wnpx on 2006-07-13 18:17:00 as **** along with 1 person mad_genius
  • Query DAGs: A Practical Paradigm for Implementing Belief-Network Inference
    Journal of Artificial Intelligence Research, Vol. 6 (1997), pp. 147-176.
    by Adnan Darwiche, Gregory M Provan
    posted to bayesian bayesnet implementation inference network query by wnpx on 2006-07-13 18:12:20 as **** along with 1 person jrw
  • Operations for Learning with Graphical Models
    Journal of Artificial Intelligence Research, Vol. 2 (1994), pp. 159-225.
    by Wray L Buntine
    posted to bayesian bayesnet graphicalmodels learning plates review by wnpx on 2006-07-13 18:08:04 as **** along with 3 people ldietz awllee helsley
  • An introduction to graphical models
    (2001)
    by Kevin Murphy
    posted to introduction graphicalmodels dt bayesnet bayesian by wnpx on 2006-07-13 18:02:38 as **** along with 2 people Borelli dedrop
  • Active Learning for Structure in Bayesian Networks
    (2001), pp. 863-869.
    by Simon Tong, Daphne Koller
    posted to active bayesnet bayesnets learning structure by wnpx on 2006-02-24 15:13:45 as **** along with 2 people abhik ebrochu
  • Growing Bayesian network models of gene networks from seed genes.
    Bioinformatics, Vol. 21 Suppl 2 (1 September 2005)
    by JM Peña, J Björkegren, J Tegnér
    posted to bayesian bayesnet gene learning network by wnpx on 2006-02-24 15:08:42 as **** along with 5 people and 1 group abhik imouthesmp ramakris naegele heliopais ic4
  • Using prior knowledge to improve genetic network reconstruction from microarray data.
    In Silico Biol, Vol. 4, No. 3. (2004), pp. 335-353.
    by P Le Phillip, A Bahl, LH Ungar
    posted to bayesian bayesnet priorknowledge by wnpx on 2006-02-23 21:02:30 as **** along with 1 person abhik
  • Ontology Driven Construction of a Knowledgebase for Bayesian Decision Models Based on UMLS.
    Stud Health Technol Inform, Vol. 116 (2005), pp. 223-228.
    by S Sadeghi, A Barzi, JW Smith
    posted to bayes bayesian bayesnet kr ontology by wnpx on 2006-02-20 18:34:33 as ****
  • Probability Theory : The Logic of Science
    (10 April 2003)
    by ET Jaynes
    posted to probability dt book bayesnet bayesian by wnpx on 2006-01-31 10:48:11 as **** along with 7 people and 2 groups livingthingdan gyuli spirit_of_numenor nathanielvirgo robertoalamino ssomani MBFalcon ComplexAdaptiveSystems DSTO-CAS
  • Bayesian network analysis of signaling networks: a primer.
    Sci STKE, Vol. 2005, No. 281. (26 April 2005)
    by D Pe'er
    posted to bayesian bayesnet inference network signaling toread by wnpx on 2006-01-30 16:32:36 as **** along with 6 people ptrobajo saman_vp tmmurali Borelli ryang jhatrimatri
  • A new approach to decoding life: systems biology.
    Annual Review of Genomics and Human Genetics, Vol. 2 (2001), pp. 343-372.
    by Trey Ideker, Timothy Galitski, Leroy Hood
    posted to systemsbiology sec-background-sysbio dt background-bio by wnpx on 2006-01-30 11:52:05 as **** along with 8 people and 1 group frohike emmackinnon okarsligil biosv mangtronix shikin lh1 cerca Bioinformatics
  • Integrated genomic and proteomic analyses of a systematically perturbed metabolic network.
    Science, Vol. 292, No. 5518. (4 May 2001), pp. 929-934.
    by T Ideker, V Thorsson, JA Ranish, R Christmas, J Buhler, JK Eng, R Bumgarner, DR Goodlett, R Aebersold, L Hood
    posted to perturbation by wnpx on 2006-01-21 22:34:14 as **** along with 11 people and 3 groups isimpson snuppepuppan BioGeek dragonrez bpb okarsligil opheliav gurkanbebek raiyar thomaskelder shikin Bioinformatics steinmetzlab GeneGo
  • A data integration methodology for systems biology.
    Proc Natl Acad Sci U S A (21 November 2005)
    by Daehee Hwang, Alistair G G Rust, Stephen Ramsey, Jennifer J J Smith, Deena M M Leslie, Andrea D D Weston, Pedro de Atauri, John D D Aitchison, Leroy Hood, Andrew F F Siegel, Hamid Bolouri
    posted to biology dataintegration sysbio systemsbiology toread by wnpx on 2006-01-21 20:13:43 as **** along with 18 people and 4 groups ggallone brian tmmurali dragonrez okarsligil jfr lfriedl Schmidtc eweaver biosv Sharpshoot noano mbeautru reidy grahamc GeeSharpMinor nedwards athleem Jarman Lab kdl Bioinformatics JJJ
  • A tutorial on learning with Bayesian networks
    (1999), pp. 301-354.
    by David Heckerman
    posted to bayesian bayesnet intro tutorial by wnpx on 2006-01-03 18:46:38 as **** along with 9 people and 1 group yaroslavvb JoSeK mjt abhik garyfeng grimm balicea rsantana slygent ReadingLab
  • Active Learning for Parameter Estimation in Bayesian Networks
    (2000), pp. 647-653.
    by Simon Tong, Daphne Koller
    posted to active activelearning bayesian bayesnet learning by wnpx on 2006-01-03 06:13:00 as **** along with 1 person abhik
  • Being Bayesian About Network Structure. A Bayesian Approach to Structure Discovery in Bayesian Networks
    (January 2003)
    by N Friedman, D Koller
    posted to bayesian bayesnets learning structure by wnpx on 2006-01-03 06:11:20 as **** along with 6 people markusd zeppe abhik eustatic yoh dimatura
  • Causal Protein-Signaling Networks Derived from Multiparameter Single-Cell Data
    Science, Vol. 308, No. 5721. (22 April 2005), pp. 523-529.
    by Karen Sachs, Omar Perez, Dana Pe'er, Douglas A Lauffenburger, Garry P Nolan
    posted to bayesian causality inference network signaling by wnpx on 2006-01-02 16:21:28 as **** along with 15 people and 1 group czeller emptyhb kentsis kaarsinogen balajis rand_bayes ryang os252 j3xucite noano koller jhatrimatri cdppublications lp2 saman_vp CDP
  • Using graphical models and genomic expression data to statistically validate models of genetic regulatory networks.
    Pac Symp Biocomput (2001), pp. 422-433.
    by AJ Hartemink, DK Gifford, TS Jaakkola, RA Young
    posted to bayesian bayesnet bioinformatics gene network regulation by wnpx on 2006-01-02 16:18:34 as **** along with 2 people brl noano
  • Learning Bayesian Networks: The Combination of Knowledge and Statistical Data
    Machine Learning, Vol. 20, No. 3. (September 1995), pp. 197-243.
    by D Heckerman, D Geiger, DM Chickering
    posted to algorithm bayesian bayesnets learning structure by wnpx on 2005-12-29 17:27:27 as **** along with 7 people ldfu yaroslavvb abhik famoreira i-stevenson Pragmatist HugoMarcelo
  • Inferring gene networks from time series microarray data using dynamic Bayesian networks.
    Brief Bioinform, Vol. 4, No. 3. (September 2003), pp. 228-235.
    by SY Kim, S Imoto, S Miyano
    posted to bayesian dbn review timeseries by wnpx on 2005-12-29 17:11:51 as ****
  • A Bayesian approach to reconstructing genetic regulatory networks with hidden factors.
    Bioinformatics, Vol. 21, No. 3. (1 February 2005), pp. 349-356.
    by Matthew J Beal, Francesco Falciani, Zoubin Ghahramani, Claudia Rangel, David L Wild
    posted to bayesian dbn dt evaluationstudies hiddenvariables networks ssm variationalbayes by wnpx on 2005-12-29 17:10:38 as ****
  • notes NIH Working Definition of Bioinformatics and Computational Biology
    (17 July 2000)
    by Michael Huerta, Florence Haseltine, Yuan Liu, Gregory Downing, Belinda Seto
    posted to bioinformatics computational-biology definition dt toinclude by wnpx on 2007-10-15 15:17:30 as ***
  • Analyzing yeast protein-protein interaction data obtained from different sources
    Nat Biotech, Vol. 20, No. 10. (October 2002), pp. 991-997.
    by Gary D Bader, Christopher W Hogue
    posted to dataintegration proteininteraction yeast by wnpx on 2007-07-27 05:31:53 as *** along with 6 people and 1 group dragonrez lfriedl balajis dgront iris_2001 karfunkel kdl
  • From in vivo to in silico biology and back
    Nature, Vol. 443, No. 7111., pp. 527-533.
    by Barbara Di Ventura, Caroline Lemerle, Konstantinos Michalodimitrakis, Luis Serrano
    posted to sysbio toread by wnpx on 2007-07-27 05:31:05 as *** along with 5 people aalibes mmt dbikard jrbanga vietanh0
  • A Markov Random Field Model for Network-based Analysis of Genomic Data.
    Bioinformatics (5 May 2007)
    by Zhi Wei, Hongzhe Li
    posted to gene markov markovnets mrf network projdt by wnpx on 2007-05-22 10:43:54 as *** along with 2 people iris_2001 ptrobajo
  • Probabilistic inference of molecular networks from noisy data sources
    Bioinformatics, Vol. 20, No. 8. (22 May 2004), pp. 1205-1213.
    by Ivan Iossifov, Michael Krauthammer, Carol Friedman, Vasileios Hatzivassiloglou, Joel S Bader, Kevin P White, Andrey Rzhetsky
    posted to bayesian dt inference od toread by wnpx on 2007-03-22 21:44:29 as *** along with 1 person iris_2001
  • Building with a scaffold: emerging strategies for high- to low-level cellular modeling.
    Trends Biotechnol, Vol. 21, No. 6. (June 2003), pp. 255-262.
    by T Ideker, D Lauffenburger
    posted to modeling sysbio toread by wnpx on 2007-03-21 19:15:59 as *** along with 2 people and 2 groups mhucka roland_ewald dIEMoSIRIS MoSi-Rostock
  • Combining biological networks to predict genetic interactions.
    Proc Natl Acad Sci U S A, Vol. 101, No. 44. (2 November 2004), pp. 15682-15687.
    by SL Wong, LV Zhang, AH Tong, Z Li, DS Goldberg, OD King, G Lesage, M Vidal, B Andrews, H Bussey, C Boone, FP Roth
    posted to dataintegration toread by wnpx on 2007-03-18 22:15:09 as *** along with 7 people and 3 groups dbk lfriedl balajis reidy eukfn patrycja_missiuro ksiek streptomyces dbk-lab kdl
  • Integrating 'omic' information: a bridge between genomics and systems biology.
    Trends Genet, Vol. 19, No. 10. (October 2003), pp. 551-560.
    by H Ge, AJ Walhout, M Vidal
    posted to dataintegration dt sysbio toread by wnpx on 2007-03-18 22:07:17 as *** along with 6 people and 2 groups tharris lfriedl biosv reidy grahamc sanchezbuelna C. elegans / WormBase kdl
  • Search for organising principles: understanding in systems biology
    Systems Biology, IEE, Vol. 1, No. 1. (2004), pp. 19-27.
    by MD Mesarovic, SN Sreenath, JD Keene
    posted to dt sysbio toread by wnpx on 2007-03-18 22:04:50 as *** along with 2 people chihchun_chen biosv
  • Systems biology: in the broadest sense of the word
    Environmental Microbiology, Vol. 7, No. 4. (April 2005), pp. 482-483.
    by W Ussery, Jensen L Juhl
    posted to dt sysbio toread by wnpx on 2007-03-18 22:03:13 as *** along with 2 people biosv larsjuhljensen
  • Systems biology: its practice and challenges.
    Cell, Vol. 121, No. 4. (20 May 2005), pp. 511-513.
    by A Aderem
    posted to dt sysbio toread by wnpx on 2007-03-18 22:02:41 as *** along with 4 people and 2 groups Badger LeightonP biosv carmaus dIEMoSIRIS MoSi-Rostock
  • SYSTEMS BIOLOGY: The variable cell
    Nature Reviews Molecular Cell Biology, Vol. 6, No. 11. (01 November 2005), pp. 822-822.
    by Arianne Heinrichs
    posted to dt sysbio toread by wnpx on 2007-03-18 22:02:05 as *** along with 1 person biosv
  • Systems Biology: Will it work?
    Systems Biology, IEE, Vol. 2, No. 1. (2005), pp. 1-4.
    by C Sansom
    posted to dt sysbio toread by wnpx on 2007-03-18 21:59:28 as *** along with 2 people chihchun_chen biosv
  • Systems biology. Life's complexity pyramid.
    Science, Vol. 298, No. 5594. (25 October 2002), pp. 763-764.
    by ZN Oltvai, AL Barabási
    posted to dt sysbio toread by wnpx on 2007-02-01 17:20:00 as *** along with 7 people and 6 groups eldan yas sameetmehta jwdietrich mattjb franklin Ema MathBio Cybernetics ComplexAdaptiveSystems DSTO-CAS Biomedical_Cybernetics AQUA-FONTIS-Study
  • A formal language for computational systems biology.
    OMICS, Vol. 8, No. 4. (2004), pp. 370-380.
    by DD Errampalli, C Priami, P Quaglia
    posted to toread sysbio dt by wnpx on 2007-01-21 22:05:07 as *** along with 3 people eldan Doug josepe
  • The nature of systems biology.
    Trends Microbiol (17 November 2006)
    by Frank J J Bruggeman, Hans V V Westerhoff
    posted to dt sysbio toread by wnpx on 2007-01-21 21:17:03 as *** along with 11 people and 5 groups alorena eldan jwm jmeppley rabu aswin kengg dolhuis livingthingdan mkrajnak ptpases Radiation_Damage Stressosome SNE livingthing Plantandetc
  • Bridging structural biology and genomics: assessing protein interaction data with known complexes
    Trends in Genetics, Vol. 18, No. 10. (1 October 2002), pp. 529-536.
    by Aled M Edwards, Bart Kus, Ronald Jansen, Dov Greenbaum, Jack Greenblatt, Mark Gerstein
    posted to bayesian complex dt interaction network protein toread by wnpx on 2006-08-24 18:45:59 as *** along with 4 people and 1 group lfriedl reidy ruvido wilbur kdl
  • What is complexity?
    Bioessays, Vol. 24, No. 12. (December 2002), pp. 1085-1094.
    by C Adami
    posted to complexity sysbio by wnpx on 2006-07-26 21:03:59 as *** along with 20 people and 9 groups qaramazov korakot hamish A_Olympia AdrianMiles alexisgallagher citematanalike yish ddahlem pverstra biosv jules59 sunilbajpai cgershen mattjb mbeautru timflutre tnhh TomQ rrbarb Philosophy_of_Information Blog_and_Wiki_Research mathgamespatterns dtl vds-arg eni macc ComplexAdaptiveSystems DSTO-CAS
  • Systems biology may work when we learn to understand the parts in terms of the whole
    Biochemical Society Transactions, Vol. 33, No. 3. (June 2005), pp. 516-519.
    by Cornish-Bowden, Cardenas
    posted to sysbio by wnpx on 2006-07-26 21:03:33 as *** along with 1 person biosv
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