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Graphs for Core Molecular Biology

by: V Danos, C Laneve
(2003)


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A graphic language---the graphic # calculus---modeling protein interactions at the domain level is introduced. Complexation, activation and mixed forms of interaction are expressed as graph rewriting rules. A compilation in a low-level graph rewriting calculus, called mobile #, is given and shown to be correct up to some suitable notion of observational equivalence. This intermediate language is of independent interest and can be easily implemented in #-like calculi.


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