PAX of mind for pathway researchers.

by: JS Luciano

Drug Discov Today, Vol. 10, No. 13. (1 July 2005), pp. 937-942.

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摘要

Scientists seeking to understand the inner workings of cells have access to a multitude of pathway data resources. However, the representations of pathway data within these resources are not consistent or interchangeable. To facilitate easy information retrieval from a wide variety of pathway resources, such as signal transduction, gene regulation, molecular interaction and metabolic pathway databases, a broad effort in the biopathways community called BioPAX was formed. New biological pathway software applications built using the BioPAX standard will be able to integrate knowledge from multiple sources in a coherent and reliable way. This article reports the progress that the BioPAX work-group has made towards building and deploying the BioPAX data-exchange format for biological pathway data.

@article{Luciano2005, abstract = {Scientists seeking to understand the inner workings of cells have access to a multitude of pathway data resources. However, the representations of pathway data within these resources are not consistent or interchangeable. To facilitate easy information retrieval from a wide variety of pathway resources, such as signal transduction, gene regulation, molecular interaction and metabolic pathway databases, a broad effort in the biopathways community called BioPAX was formed. New biological pathway software applications built using the BioPAX standard will be able to integrate knowledge from multiple sources in a coherent and reliable way. This article reports the progress that the BioPAX work-group has made towards building and deploying the BioPAX data-exchange format for biological pathway data.}, address = {Harvard Medical School, MA, USA. jluciano@biopathways.org}, author = {Luciano, J. S. }, citeulike-article-id = {483206}, doi = {http://dx.doi.org/10.1016/S1359-6446(05)03501-4}, issn = {1359-6446}, journal = {Drug Discov Today}, keywords = {biopax, data, dt, format, pathway, representation}, month = {July}, number = {13}, pages = {937--942}, posted-at = {2006-11-17 15:55:21}, priority = {2}, title = {PAX of mind for pathway researchers.}, url = {http://dx.doi.org/10.1016/S1359-6446(05)03501-4}, volume = {10}, year = {2005} }

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TY - JOUR ID - Luciano2005 L3 - citeulike-article-id:483206 N2 - Scientists seeking to understand the inner workings of cells have access to a multitude of pathway data resources. However, the representations of pathway data within these resources are not consistent or interchangeable. To facilitate easy information retrieval from a wide variety of pathway resources, such as signal transduction, gene regulation, molecular interaction and metabolic pathway databases, a broad effort in the biopathways community called BioPAX was formed. New biological pathway software applications built using the BioPAX standard will be able to integrate knowledge from multiple sources in a coherent and reliable way. This article reports the progress that the BioPAX work-group has made towards building and deploying the BioPAX data-exchange format for biological pathway data. IS - 13 JF - Drug Discov Today SN - 1359-6446 AD - Harvard Medical School, MA, USA. jluciano@biopathways.org EP - 942 TI - PAX of mind for pathway researchers. VL - 10 SP - 937 KW - biopax KW - data KW - dt KW - format KW - pathway KW - representation AU - Luciano, JS PY - 2005/07/01/ UR - http://dx.doi.org/10.1016/S1359-6446(05)03501-4 ER -

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