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winterschlaefer's library [80 articles]

最近录入 winterschlaefer's ordered by to_read.
  • Choosing BLAST options for better detection of orthologs as reciprocal best hits
    Bioinformatics (26 November 2007), btm585.
    by Gabriel Moreno-Hagelsieb, Kristen Latimer
    posted to orthology by winterschlaefer on 2008-02-01 10:09:50 as *** along with 8 people druvus natstreet cdeane jyuh cjeans renatomilani mclarenv cerca
  • Module-based outcome prediction using breast cancer compendia.
    PLoS ONE, Vol. 2, No. 10. (2007)
    by MH van Vliet, CN Klijn, LF Wessels, MJ Reinders
    posted to predictor microarray classification by winterschlaefer on 2008-11-17 10:39:34 as ** along with 4 people gowtham jfr macavity1g ptrobajo
  • Microarray data analysis: from disarray to consolidation and consensus
    Nature Reviews Genetics, Vol. 7, No. 1., pp. 55-65.
    by David B Allison, Xiangqin Cui, Grier P Page, Mahyar Sabripour
    posted to review microarray by winterschlaefer on 2008-11-03 16:40:50 as ** along with 24 people and 2 groups verdicchio jyuh barry textoris jfr Ayest balicea sterovetta lhonigberg acidwizard ronaldozhou vpschulz rmk schuylrp Garamonfok debasis GeeSharpMinor dimatura heliopais shikin minostro giovenko jo_davies aviad_work structural_bioinformatics Bioinformatics
  • Using protein complexes to predict phenotypic effects of gene mutation
    Genome Biology, Vol. 8 (27 November 2007), R252.
    by Hunter B Fraser, Joshua B Plotkin
    posted to ppi phenotype complexes by winterschlaefer on 2008-10-24 13:07:14 as ** along with 5 people diamantis grahamc ramensky jiny bpcusack
  • The accuracy of several multiple sequence alignment programs for proteins
    BMC Bioinformatics, Vol. 7 (24 October 2006), 471.
    by Paulo AS Nuin, Zhuozhi Wang, Elisabeth RM Tillier
    posted to sequence comparison benchmark alignment by winterschlaefer on 2008-10-23 13:36:16 as ** along with 6 people viktor21614 gjuggler carlfulp tny plofje rabio
  • Towards synthesis of a minimal cell
    Mol Syst Biol, Vol. 2 (2006)
    by Anthony C Forster, George M Church
    posted to synthetic minimal by winterschlaefer on 2008-10-22 19:26:38 as ** along with 4 people and 3 groups xico dchughes mmt kjedler WetBiology G4ID Genetics-of-Gambling
  • The Eukaryotic Genome as an RNA Machine
    Science, Vol. 319, No. 5871. (28 March 2008), pp. 1787-1789.
    by Paulo P Amaral, Marcel E Dinger, Tim R Mercer, John S Mattick
    posted to rna noncoding by winterschlaefer on 2008-10-22 09:37:40 as ** along with 9 people and 1 group myrtilus inesdesantiago operon dullhunk AbnerCYH biomcgary dlobo dquest siebert GEB
  • Structure-function relationships of the polypyrimidine tract binding protein.
    Cellular and molecular life sciences : CMLS, Vol. 65, No. 4. (February 2008), pp. 516-527.
    by SD Auweter, FH Allain
    posted to rna review ptb by winterschlaefer on 2008-10-21 10:34:56 as **
  • Built-in loops allow versatility in domain–domain interactions: Lessons from self-interacting domains
    Proceedings of the National Academy of Sciences, Vol. 105, No. 36. (2008), pp. 13292-13297.
    by Eyal Akiva, Zohar Itzhaki, Hanah Margalit
    posted to loops ddi by winterschlaefer on 2008-10-20 17:15:29 as ** along with 3 people icq242500260 marck zwang
  • Conservation and topology of protein interaction networks under duplication-divergence evolution.
    Proceedings of the National Academy of Sciences of the United States of America (16 July 2008)
    by Kirill Evlampiev, Hervé Isambert
    posted to ppi network evolution by winterschlaefer on 2008-10-20 17:14:39 as ** along with 2 people Garamonfok bpcusack
  • High-confidence prediction of global interactomes based on genome-wide coevolutionary networks
    Proceedings of the National Academy of Sciences (16 January 2008), 0709671105.
    by David Juan, Florencio Pazos, Alfonso Valencia
    posted to prediction ppi coevolution by winterschlaefer on 2008-10-19 15:56:54 as ** along with 14 people and 1 group marti tmmurali brant balicea sebastien_vigneau bluto cjeans aconesa Katje roys friendpine huali mdstobbe paolomarcatili microbiology_nijmegen
  • Predicting protein-protein interactions based only on sequences information
    PNAS, Vol. 104, No. 11. (13 March 2007), pp. 4337-4341.
    by Juwen Shen, Jian Zhang, Xiaomin Luo, Weiliang Zhu, Kunqian Yu, Kaixian Chen, Yixue Li, Hualiang Jiang
    posted to sequence prediction ppi by winterschlaefer on 2008-10-08 13:33:16 as ** along with 6 people and 1 group samjlord Dualsystems ruvido cjeans huyun110 phoenixzxl moernerlab
  • A data integration methodology for systems biology: Experimental verification
    PNAS, Vol. 102, No. 48. (29 November 2005), pp. 17302-17307.
    by Daehee Hwang, Jennifer J Smith, Deena M Leslie, Andrea D Weston, Alistair G Rust, Stephen Ramsey, Pedro de Atauri, Andrew F Siegel, Hamid Bolouri, John D Aitchison, Leroy Hood
    posted to sysbio by winterschlaefer on 2008-10-08 10:31:29 as ** along with 11 people and 2 groups Retchless tmmurali dragonrez okarsligil lfriedl lyongu eweaver wnpx mbeautru GeeSharpMinor nedwards kdl Bioinformatics
  • Strong time dependence of the 76-gene prognostic signature for node-negative breast cancer patients in the TRANSBIG multicenter independent validation series.
    Clin Cancer Res, Vol. 13, No. 11. (1 June 2007), pp. 3207-3214.
    by C Desmedt, F Piette, S Loi, Y Wang, F Lallemand, B Haibe-Kains, G Viale, M Delorenzi, Y Zhang, MS d'Assignies, J Bergh, R Lidereau, P Ellis, AL Harris, JG Klijn, JA Foekens, F Cardoso, MJ Piccart, M Buyse, C Sotiriou,
    posted to prediction microarray cancer by winterschlaefer on 2008-10-08 10:29:41 as ** along with 2 people jfr frohike
  • Network-based classification of breast cancer metastasis
    Mol Syst Biol, Vol. 3 (16 October 2007)
    by Han-Yu Chuang, Eunjung Lee, Yu-Tsueng Liu, Doheon Lee, Trey Ideker
    posted to ppi microarray cancer by winterschlaefer on 2008-10-08 09:59:50 as ** along with 20 people and 3 groups ggallone giovenko isimpson ihpark bertelsen jfr kengg frohike mikaelhuss cjeans zwang cerami abhattac shikin oelemento roys ptrobajo dap5087 saman_vp verdicchio Jarman Lab Bioinformatics GeneGo
  • Assessment of survival prediction models based on microarray data.
    Bioinformatics (7 May 2007)
    by Martin Schumacher, Harald Binder, Thomas Gerds
    posted to survival prediction microarray by winterschlaefer on 2008-10-08 09:50:40 as ** along with 3 people jfr rdiaz shigepong
  • Correlation between Genetic and Geographic Structure in Europe.
    Current biology : CB (6 August 2008)
    by Oscar Lao, Timothy T T Lu, Michael Nothnagel, Olaf Junge, Sandra Freitag-Wolf, Amke Caliebe, Miroslava Balascakova, Jaume Bertranpetit, Laurence A A Bindoff, David Comas, Gunilla Holmlund, Anastasia Kouvatsi, Milan Macek, Isabelle Mollet, Walther Parson, Jukka Palo, Rafal Ploski, Antti Sajantila, Adriano Tagliabracci, Ulrik Gether, Thomas Werge, Fernando Rivadeneira, Albert Hofman, André G G Uitterlinden, Christian Gieger, Heinz-Erich E Wichmann, Andreas Rüther, Stefan Schreiber, Christian Becker, Peter Nürnberg, Matthew R R Nelson, Michael Krawczak, Manfred Kayser
    posted to population genetics by winterschlaefer on 2008-10-07 09:50:22 as ** along with 1 person Terkko
  • An assessment of the uses of homologous interactions
    Bioinformatics (27 November 2007), btm576.
    by Ramazan Saeed, Charlotte Deane
    posted to ppi orthology by winterschlaefer on 2008-10-06 11:49:35 as ** along with 8 people chad_davis grahamc cjeans laughcry mingzhi cdeane Pao-Yang samesense
  • Gene expression profiling predicts survival in conventional renal cell carcinoma.
    PLoS medicine, Vol. 3, No. 1. (January 2006)
    by H Zhao, B Ljungberg, K Grankvist, T Rasmuson, R Tibshirani, JD Brooks
    posted to survival predictor microarray cancer by winterschlaefer on 2008-10-02 16:11:43 as **
  • Comparison of Affymetrix GeneChip expression measures
    Bioinformatics, Vol. 22, No. 7. (1 April 2006), pp. 789-794.
    by Rafael A Irizarry, Zhijin Wu, Harris A Jaffee
    posted to statistics microarray by winterschlaefer on 2008-10-02 10:05:16 as ** along with 5 people heliopais RMGraze hggr ghattem groepl
  • Exploration, normalization, and summaries of high density oligonucleotide array probe level data.
    Biostatistics, Vol. 4, No. 2. (April 2003), pp. 249-264.
    by RA Irizarry, B Hobbs, F Collin, YD Beazer-Barclay, KJ Antonellis, U Scherf, TP Speed
    posted to microarray by winterschlaefer on 2008-10-01 18:39:28 as ** along with 19 people and 4 groups emptyhb heliopais giovenko miguel textoris Dax42 RMGraze fisherp tvdbulck dtc1 vpschulz rmk joepickrell ghattem bertelsen jo_davies waszak bakakaj vertikalist MathBio Bioinformatics Computational_Systems_Biology Systems_Biology
  • The limit fold change model: A practical approach for selecting differentially expressed genes from microarray data
    BMC Bioinformatics, Vol. 3, No. 1. (2002)
    by David Mutch, Alvin Berger, Robert Mansourian, Andreas Rytz, Matthew A Roberts
    posted to statistics microarray by winterschlaefer on 2008-10-01 15:54:00 as ** along with 1 person abduljarrah
  • The Use of Molecular Profiling to Predict Survival after Chemotherapy for Diffuse Large-B-Cell Lymphoma
    N Engl J Med, Vol. 346, No. 25. (20 June 2002), pp. 1937-1947.
    by Andreas Rosenwald, George Wright, Wing C Chan, Joseph M Connors, Elias Campo, Richard I Fisher, Randy D Gascoyne, Konrad H Muller-Hermelink, Erlend B Smeland, Jena M Giltnane, Elaine M Hurt, Hong Zhao, Lauren Averett, Liming Yang, Wyndham H Wilson, Elaine S Jaffe, Richard Simon, Richard D Klausner, John Powell, Patricia L Duffey, Dan L Longo, Timothy C Greiner, Dennis D Weisenburger, Warren G Sanger, Bhavana J Dave, James C Lynch, Julie Vose, James O Armitage, Emilio Montserrat, Armando Lopez-Guillermo, Thomas M Grogan, Thomas P Miller, Michel Leblanc, German Ott, Stein Kvaloy, Jan Delabie, Harald Holte, Peter Krajci, Trond Stokke, Louis M Staudt, The
    posted to predictor microarray cancer by winterschlaefer on 2008-10-01 10:42:27 as **
  • Selection bias in gene extraction on the basis of microarray gene-expression data.
    Proc Natl Acad Sci U S A, Vol. 99, No. 10. (14 May 2002), pp. 6562-6566.
    by C Ambroise, GJ McLachlan
    posted to statistics predictor microarray by winterschlaefer on 2008-09-29 12:01:45 as ** along with 4 people kentsis evaf chad_davis chiahuey
  • Pre-validation and inference in microarrays.
    Statistical applications in genetics and molecular biology, Vol. 1 (2002)
    by RJ Tibshirani, B Efron
    posted to statistics predictor microarray cancer by winterschlaefer on 2008-09-29 11:51:53 as **
  • Gene expression predictors of breast cancer outcomes.
    Lancet, Vol. 361, No. 9369. (10 May 2003), pp. 1590-1596.
    by Erich Huang, Skye H Cheng, Holly Dressman, Jennifer Pittman, Mei H Tsou, Cheng F Horng, Andrea Bild, Edwin S Iversen, Ming Liao, Chii M Chen, Mike West, Joseph R Nevins, Andrew T Huang
    posted to predictor microarray cancer by winterschlaefer on 2008-09-29 11:48:16 as ** along with 1 person naegele
  • A gene-expression signature as a predictor of survival in breast cancer.
    N Engl J Med, Vol. 347, No. 25. (19 December 2002), pp. 1999-2009.
    by MJ van de Vijver, YD He, LJ van't Veer, H Dai, AA Hart, DW Voskuil, GJ Schreiber, JL Peterse, C Roberts, MJ Marton, M Parrish, D Atsma, A Witteveen, A Glas, L Delahaye, T van der Velde, H Bartelink, S Rodenhuis, ET Rutgers, SH Friend, R Bernards
    posted to predictor microarray cancer by winterschlaefer on 2008-09-29 11:06:49 as ** along with 9 people and 1 group windman83 jfr tuck adelgiglio giovanni frohike Ao_Li2007 lyndon macavity1g GeschwindLab
  • Individual Genomes Instead of Race for Personalized Medicine
    Clin Pharmacol Ther, Vol. 84, No. 3. (2008), pp. 306-309.
    by PC Ng, Q Zhao, S Levy, RL Strausberg, JC Venter
    posted to personalized medicine by winterschlaefer on 2008-09-25 13:40:37 as ** along with 1 person jasonbobe
  • Estimating the Error Rate of a Prediction Rule: Improvement on Cross-Validation
    Journal of the American Statistical Association, Vol. 78, No. 382. (1983), pp. 316-331.
    by Bradley Efron
    posted to statistics prediction classification by winterschlaefer on 2008-09-24 15:20:25 as ** along with 1 person dmajka
  • Diffuse large B-cell lymphoma outcome prediction by gene-expression profiling and supervised machine learning.
    Nat Med, Vol. 8, No. 1. (January 2002), pp. 68-74.
    by MA Shipp, KN Ross, P Tamayo, AP Weng, JL Kutok, RC Aguiar, M Gaasenbeek, M Angelo, M Reich, GS Pinkus, TS Ray, MA Koval, KW Last, A Norton, TA Lister, J Mesirov, DS Neuberg, ES Lander, JC Aster, TR Golub
    posted to predictor microarray cancer by winterschlaefer on 2008-09-18 12:35:53 as ** along with 2 people ggrot jfr
  • Molecular Classification of Cancer: Class Discovery and Class Prediction by Gene Expression Monitoring
    Science, Vol. 286, No. 5439. (15 October 1999), pp. 531-537.
    by TR Golub, DK Slonim, P Tamayo, C Huard, M Gaasenbeek, JP Mesirov, H Coller, ML Loh, JR Downing, MA Caligiuri, CD Bloomfield, ES Lander
    posted to microarray classification cancer by winterschlaefer on 2008-09-18 10:42:00 as ** along with 15 people and 1 group ctaraujo gabe_rosser ihpark hhhhssss balajis sdvillal archroad giovanni santhosh ugengma wtribbey jo_davies akastrin zchen raiyar GeschwindLab
  • Semi-supervised methods to predict patient survival from gene expression data.
    PLoS Biol, Vol. 2, No. 4. (April 2004)
    by E Bair, R Tibshirani
    posted to survival predictor microarray cancer by winterschlaefer on 2008-09-18 10:21:54 as ** along with 3 people djkt jfr rdiaz
  • Molecular diagnosis of Burkitt's lymphoma.
    N Engl J Med, Vol. 354, No. 23. (8 June 2006), pp. 2431-2442.
    by SS Dave, K Fu, GW Wright, LT Lam, P Kluin, EJ Boerma, TC Greiner, DD Weisenburger, A Rosenwald, G Ott, HK Müller-Hermelink, RD Gascoyne, J Delabie, LM Rimsza, RM Braziel, TM Grogan, E Campo, ES Jaffe, BJ Dave, W Sanger, M Bast, JM Vose, JO Armitage, JM Connors, EB Smeland, S Kvaloy, H Holte, RI Fisher, TP Miller, E Montserrat, WH Wilson, M Bahl, H Zhao, L Yang, J Powell, R Simon, WC Chan, LM Staudt,
    posted to predictor microarray cancer by winterschlaefer on 2008-09-18 10:19:18 as ** along with 2 people jfr tibbitts
  • Predicting disease genes using protein-protein interactions.
    J Med Genet, Vol. 43, No. 8. (August 2006), pp. 691-698.
    by M Oti, B Snel, MA Huynen, HG Brunner
    posted to ppi disease by winterschlaefer on 2008-09-12 16:03:28 as ** along with 6 people diamantis bicko jiny svdate xingxu balicea
  • Antibody targeting studies in a transgenic murine model of spontaneous colorectal tumors.
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 98, No. 18. (28 August 2001), pp. 10256-10260.
    by RW Wilkinson, EL Ross, R Poulsom, M Ilyas, J Straub, D Snary, WF Bodmer, SJ Mather
    posted to cancer cea prediction tumor-marker by winterschlaefer on 2008-07-08 13:55:50 as **
  • Prediction error estimation: a comparison of resampling methods
    Bioinformatics, Vol. 21, No. 15. (1 August 2005), pp. 3301-3307.
    by Annette M Molinaro, Richard Simon, Ruth M Pfeiffer
    posted to prediction validation by winterschlaefer on 2008-07-08 12:01:42 as ** along with 1 person and 1 group caporaso biomedical-nlp
  • Prediction of cancer outcome with microarrays: a multiple random validation strategy.
    Lancet, Vol. 365, No. 9458. (5 February 2005), pp. 488-492.
    by S Michiels, S Koscielny, C Hill
    posted to cancer microarray predictor by winterschlaefer on 2008-07-02 14:55:55 as ** along with 6 people and 1 group frohike setar textoris jfr chad_davis giovanni GeschwindLab
  • Recurrent fusion of TMPRSS2 and ETS transcription factor genes in prostate cancer.
    Science, Vol. 310, No. 5748. (28 October 2005), pp. 644-648.
    by SA Tomlins, DR Rhodes, S Perner, SM Dhanasekaran, R Mehra, XW Sun, S Varambally, X Cao, J Tchinda, R Kuefer, C Lee, JE Montie, RB Shah, KJ Pienta, MA Rubin, AM Chinnaiyan
    posted to no-tag by winterschlaefer on 2008-06-30 15:27:25 as ** along with 6 people ihpark kentsis jfr tuck emb51 oelemento
  • Active caspase-1 is a regulator of unconventional protein secretion.
    Cell, Vol. 132, No. 5. (7 March 2008), pp. 818-831.
    by M Keller, A Rüegg, S Werner, HD Beer
    posted to caspase by winterschlaefer on 2008-06-10 09:32:47 as **
  • Outcome signature genes in breast cancer: is there a unique set?
    Bioinformatics, Vol. 21, No. 2. (2005), pp. 171-178.
    by Liat Ein-Dor, Itai Kela, Gad Getz, David Givol, Eytan Domany
    posted to cancer microarray by winterschlaefer on 2008-06-09 16:24:56 as ** along with 2 people and 1 group frohike fishtank Bioinformatics
  • A gene expression signature that can predict the recurrence of tamoxifen-treated primary breast cancer.
    Clinical cancer research : an official journal of the American Association for Cancer Research, Vol. 14, No. 6. (15 March 2008), pp. 1744-1752.
    by M Chanrion, V Negre, H Fontaine, N Salvetat, F Bibeau, G Mac Grogan, L Mauriac, D Katsaros, F Molina, C Theillet, JM Darbon
    posted to cancer microarray statistics by winterschlaefer on 2008-06-03 07:22:33 as ** along with 2 people Zephyrus jfr
  • Profiling studies in ovarian cancer: a review.
    Oncologist, Vol. 12, No. 8. (August 2007), pp. 960-966.
    by RS Fehrmann, XY Li, AG van der Zee, S de Jong, GJ Te Meerman, EG de Vries, AP Crijns
    posted to cancer microarray by winterschlaefer on 2008-06-03 07:20:41 as ** along with 1 person jfr
  • Reconstruction of genetic association networks from microarray data: A partial least squares approach.
    Bioinformatics (18 January 2008)
    by Vasyl Pihur, Somnath Datta, Susmita Datta
    posted to microarray statistics by winterschlaefer on 2008-06-03 07:18:27 as ** along with 6 people jyuh cannin jfr shigepong aconesa sotacam
  • Predictors of primary breast cancers responsiveness to preoperative epirubicin/cyclophosphamide-based chemotherapy: translation of microarray data into clinically useful predictive signatures.
    J Transl Med, Vol. 3 (9 August 2005)
    by O Modlich, HB Prisack, M Munnes, W Audretsch, H Bojar
    posted to cancer microarray plsr statistics by winterschlaefer on 2008-06-03 06:56:57 as ** along with 1 person jfr
  • Partial least squares proportional hazard regression for application to DNA microarray survival data
    Bioinformatics, Vol. 18, No. 12. (1 December 2002), pp. 1625-1632.
    by Danh V Nguyen, David M Rocke
    posted to cancer microarray plsr statistics by winterschlaefer on 2008-06-03 06:52:06 as ** along with 1 person rdiaz
  • Characterization of Protein Hubs by Inferring Interacting Motifs from Protein Interactions
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e178.
    by Ramon Aragues, Andrej Sali, Jaume Bonet, Marc A Marti-Renom, Baldo Oliva
    posted to hubs motif ppi by winterschlaefer on 2008-05-11 12:17:02 as ** along with 2 people zwang Ema
  • Principles of Protein-Protein Interactions: What are the Preferred Ways For Proteins To Interact?
    Chem. Rev. (21 March 2008)
    by O Keskin, A Gursoy, B Ma, R Nussinov
    posted to ppi by winterschlaefer on 2008-05-09 12:32:53 as ** along with 5 people and 1 group jmrivort higueruelo allmensch GermanErlenkamp kintoki Supramolecular
  • State of the nation in data integration for bioinformatics.
    J Biomed Inform (5 February 2008)
    by Carole Goble, Robert Stevens
    posted to data integration by winterschlaefer on 2008-05-08 15:32:11 as ** along with 6 people fgibson jyuh dullhunk cjhall alanrw dansullivanblk
  • Green Fluorescent Protein Functions as a Reporter for Protein Localization in Escherichia coli
    J. Bacteriol., Vol. 182, No. 14. (15 July 2000), pp. 4068-4076.
    by Bradley J Feilmeier, Ginger Iseminger, Diane Schroeder, Hannali Webber, Gregory J Phillips
    posted to gfp by winterschlaefer on 2008-04-28 11:20:13 as **
  • Improperly folded green fluorescent protein is secreted via a non-classical pathway
    J Cell Sci, Vol. 115, No. 19. (1 October 2002), pp. 3849-3857.
    by Marcel Tanudji, Sarah Hevi, Steven L Chuck
    posted to gfp by winterschlaefer on 2008-04-28 11:19:46 as **
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