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waszak's software [24 articles]

当前文献位于 waszak's 文献库 标签分类为 software. You can also see everyone's software.
  • Automated generation of heuristics for biological sequence comparison
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Guy Slater, Ewan Birney
    posted to software alignment algorithm by waszak on 2008-10-08 15:22:58 as ** along with 7 people and 1 group jmcq druvus indigoviolet massivemayhem wenhan hpaces marti EisenLab
  • A comparison study: applying segmentation to array CGH data for downstream analyses
    Bioinformatics, Vol. 21, No. 22. (15 November 2005), pp. 4084-4091.
    by Hanni Willenbrock, Jane Fridlyand
    posted to software r cnp cgh algorithm acgh by waszak on 2008-10-08 15:15:21 as ** along with 2 people shigepong ellakat
  • Transcript mapping with high-density oligonucleotide tiling arrays
    Bioinformatics, Vol. 22, No. 16. (15 August 2006), pp. 1963-1970.
    by Wolfgang Huber, Joern Toedling, Lars M Steinmetz
    posted to tiling software r normalization microarray algorithm by waszak on 2008-10-08 15:07:35 as ** along with 6 people raiyar johncumbers jtaylor ptrobajo tresch GeeSharpMinor
  • A robust statistical method for case-control association testing with copy number variation.
    Nature genetics (7 September 2008)
    by Chris Barnes, Vincent Plagnol, Tomas Fitzgerald, Richard Redon, Jonathan Marchini, David Clayton, Matthew E E Hurles
    posted to software snp r ld gmm em cnv associationstudy algorithm affymetrix by waszak on 2008-10-08 15:01:08 as ** along with 12 people and 1 group pengchy ptrobajo vplagnol caseybrown Zephyrus dakelley buyske misonneh djkt rdiaz Stew jyuh Roswell Cancer Crosstalk
  • A probabilistic generative model for GO enrichment analysis
    Nucl. Acids Res. (1 August 2008), gkn434.
    by Yong Lu, Roni Rosenfeld, Itamar Simon, Gerard J Nau, Ziv Bar-Joseph
    posted to software microarray go algorithm by waszak on 2008-09-28 20:06:37 as ** along with 9 people jyuh inesdesantiago yaredo rdiaz paszkows barriot tmmurali raiyar jandot
  • Signature Evaluation Tool (SET): a Java-based tool to evaluate and visualize the sample discrimination abilities of gene expression signatures
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Chih H Jen, Tsun P Yang, Chien Y Tung, Shu H Su, Chi H Lin, Ming T Hsu, Hsei W Wang
    posted to discrimination microarray signature software by waszak on 2008-02-01 09:54:09 as ** along with 4 people and 2 groups Zephyrus jfr frohike jyuh Roswell Cancer Crosstalk Breast Cancer Reading Club
  • MetaReg: A platform for modeling, analysis and visualization of biological systems using large-scale experimental data
    Genome Biology, Vol. 9 (02 January 2008), R1.
    by Igor Ulitsky, Irit Gat-Viks, Ron Shamir
    posted to modeling platform software by waszak on 2008-02-01 09:30:35 as ** along with 4 people jyuh tmmurali ptrobajo jfr
  • Visualization methods for statistical analysis of microarray clusters.
    BMC Bioinformatics, Vol. 6 (2005)
    by MA Hibbs, NC Dirksen, K Li, OG Troyanskaya
    posted to clustering microarray software by waszak on 2007-12-25 15:58:25 as ** along with 5 people jyuh jfr maryee smbaxtersf ndiaz
  • MDQC: a new quality assessment method for microarrays based on quality control reports
    Bioinformatics, Vol. 23, No. 23. (1 December 2007), pp. 3162-3169.
    by Cohen, Zsuzsanna Hollander, Enqing Shen, Ruben H Zamar, Robert Balshaw, Andreas Scherer, Bruce Mcmanus, Paul Keown, Robert W Mcmaster, Raymond T Ng
    posted to microarray quality r software by waszak on 2007-12-10 14:29:13 as ** along with 2 people jyuh aviad_work
  • oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language
    Bioinformatics (17 September 2007), btm469.
    by Remo Sanges, Francesca Cordero, Raffaele A Calogero
    posted to affymetrix bioconductor r software by waszak on 2007-12-10 14:27:34 as ** along with 2 people jyuh rdiaz
  • GSEA-P: A desktop application for Gene Set Enrichment Analysis
    Bioinformatics (20 July 2007), btm369.
    by Aravind Subramanian, Heidi Kuehn, Joshua Gould, Pablo Tamayo, Jill P Mesirov
    posted to gsea microarray networks software by waszak on 2007-12-09 17:08:13 as ** along with 8 people and 1 group jyuh cassj ealloza schuylrp barriot dmontaner Eugene heliopais BioinfoCIPF
  • BGX: a Bioconductor package for the Bayesian integrated analysis of Affymetrix GeneChips
    BMC Bioinformatics, Vol. 8 (12 November 2007), 439.
    by Ernest Turro, Natalia Bochkina, Anne-Mette K Hein, Sylvia Richardson
    posted to affymetrix algorithm bayesian bioconductor bioinformatics software statistics by waszak on 2007-11-16 09:35:31 as ***** along with 3 people jyuh jfr shigepong
  • Simultaneous clustering of gene expression data with clinical chemistry and pathological evaluations reveals phenotypic prototypes.
    BMC Syst Biol, Vol. 1 (2007)
    by PR Bushel, RD Wolfinger, G Gibson
    posted to affymetrix microarray software by waszak on 2007-11-14 11:00:55 as ** along with 1 person jfr
  • A search engine to identify pathway genes from expression data on multiple organisms
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Chunnuan Chen, Matthew Weirauch, Corey Powell, Alexander Zambon, Joshua Stuart
    posted to microarray pathway software by waszak on 2007-11-13 21:56:28 as ***** along with 6 people and 1 group tharris jyuh tmmurali jfr rsandie AlexanderPico C. elegans / WormBase
  • BNArray: an R package for constructing gene regulatory networks from microarray data by using Bayesian network.
    Bioinformatics (27 September 2006)
    by Xiaohui Chen, Ming Chen, Kaida Ning
    posted to microarray networks r software by waszak on 2007-11-13 21:54:53 as ** along with 6 people jyuh wnpx frohike jhatrimatri shigepong ramakris
  • The Gaggle: an open-source software system for integrating bioinformatics software and data sources.
    BMC Bioinformatics, Vol. 7 (2006)
    by PT Shannon, DJ Reiss, R Bonneau, NS Baliga
    posted to bioinformatics microarray software by waszak on 2007-11-13 21:49:45 as **** along with 8 people and 2 groups jyuh julius dullhunk frohike jmuhlich cerami pablomendes megraw SysbioMPI-TCells SorgerLab
  • RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis.
    Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2825-2827.
    by F Hong, R Breitling, CW McEntee, BS Wittner, JL Nemhauser, J Chory
    posted to affymetrix bioconductor microarray software by waszak on 2007-11-13 21:43:39 as *** along with 2 people jfr sanchezbuelna
  • Array2BIO: from microarray expression data to functional annotation of co-regulated genes
    BMC Bioinformatics, Vol. 7 (16 June 2006), 307.
    by Gabriela G Loots, Patrick SG Chain, Shalini Mabery, Amy Rasley, Emilio Garcia, Ivan Ovcharenko
    posted to management microarray software by waszak on 2007-11-13 21:42:06 as **** along with 2 people bsamal jfr
  • CoXpress: differential co-expression in gene expression data
    BMC Bioinformatics, Vol. 7 (20 November 2006), 509.
    by Michael Watson
    posted to affymetrix co-expression microarray networks software statistics by waszak on 2007-11-13 21:28:58 as ***** along with 5 people jfr dquest shigepong dps gabe_rosser
  • SIGMA: A System for Integrative Genomic Microarray Analysis of Cancer Genomes
    BMC Genomics, Vol. 7 (27 December 2006), 324.
    by Raj Chari, William W Lockwood, Bradley P Coe, Anna Chu, Devon Macey, Andrew Thomson, Jonathan J Davies, Calum Macaulay, Wan L Lam
    posted to cgh microarray software by waszak on 2007-11-13 21:23:48 as ** along with 2 people jfr blackm0k
  • GGtools: analysis of genetics of gene expression in bioconductor.
    Bioinformatics, Vol. 23, No. 4. (15 February 2007), pp. 522-523.
    by VJ Carey, M Morgan, S Falcon, R Lazarus, R Gentleman
    posted to affymetrix bioconductor microarray software by waszak on 2007-11-13 21:12:54 as ** along with 3 people jyuh jfr sanchezbuelna
  • Eu.Gene Analyzer a tool for integrating gene expression data with pathway databases.
    Bioinformatics (28 June 2007)
    by Duccio Cavalieri, Cinzia Castagnini, Simona Toti, Karolina Maciag, Thomas Kelder, Luca Gambineri, Samuele Angioli, Piero Dolara
    posted to microarray pathway software by waszak on 2007-11-13 21:06:24 as ** along with 6 people jyuh tmmurali jfr aviad_work AlexanderPico thomaskelder
  • Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation.
    Bioinformatics (19 February 2007)
    by Aaron Barsky, Jennifer L L Gardy, Robert E W E Hancock, Tamara Munzner
    posted to microarray networks software by waszak on 2007-11-13 21:04:33 as ** along with 2 people jyuh ghattem
  • Microarray Blob-Defect Removal Improves Array Analysis.
    Bioinformatics (1 March 2007)
    by Jun S S Song, Kaveh Maghsoudi, Wei Li, Edward Fox, John Quackenbush, X Shirley Liu
    posted to affymetrix microarray software tiling by waszak on 2007-11-13 20:57:22 as ** along with 5 people and 1 group jfr kengg shigepong ghattem caseybrown Plantandetc
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