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waszak's microarray [60 articles]

当前文献位于 waszak's 文献库 标签分类为 microarray. You can also see everyone's microarray.
  • Copy-number variations associated with neuropsychiatric conditions
    Nature, Vol. 455, No. 7215. (16 October 2008), pp. 919-923.
    by Cook, Stephen W Scherer
    posted to schizophrenia review neuropsychiatric microarray cnv autism by waszak on 2008-10-17 14:05:37 as ** along with 2 people psique jdbowes
  • Regulation of rtt107 recruitment to stalled DNA replication forks by the cullin rtt101 and the rtt109 acetyltransferase.
    Molecular biology of the cell, Vol. 19, No. 1. (January 2008), pp. 171-180.
    by TM Roberts, IW Zaidi, JA Vaisica, M Peter, GW Brown
    posted to yeast tiling microarray affymetrix by waszak on 2008-10-08 17:43:34 as **
  • A high-resolution atlas of nucleosome occupancy in yeast
    Nature Genetics, Vol. 39, No. 10. (16 September 2007), pp. 1235-1244.
    by William Lee, Desiree Tillo, Nicolas Bray, Randall H Morse, Ronald W Davis, Timothy R Hughes, Corey Nislow
    posted to yeast tiling microarray by waszak on 2008-10-08 17:42:46 as ** along with 3 people aalibes epigenetics siebert
  • A high-resolution map of transcription in the yeast genome
    PNAS, Vol. 103, No. 14. (4 April 2006), pp. 5320-5325.
    by Lior David, Wolfgang Huber, Marina Granovskaia, Joern Toedling, Curtis J Palm, Lee Bofkin, Ted Jones, Ronald W Davis, Lars M Steinmetz
    posted to yeast transcriptome tiling microarray by waszak on 2008-10-08 15:17:48 as ** along with 10 people and 2 groups tuck alexg eckart_bindewald dpollard entropy raiyar xingxu chasmand jyuh GeeSharpMinor EisenLab steinmetzlab
  • Transcript mapping with high-density oligonucleotide tiling arrays
    Bioinformatics, Vol. 22, No. 16. (15 August 2006), pp. 1963-1970.
    by Wolfgang Huber, Joern Toedling, Lars M Steinmetz
    posted to tiling software r normalization microarray algorithm by waszak on 2008-10-08 15:07:35 as ** along with 6 people raiyar johncumbers jtaylor ptrobajo tresch GeeSharpMinor
  • Transcript normalization and segmentation of tiling array data.
    Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing (2008), pp. 527-538.
    by G Zeller, SR Henz, S Laubinger, D Weigel, G Rätsch
    posted to tiling segmentation normalization microarray algorithm by waszak on 2008-10-08 15:06:18 as ** along with 1 person GeeSharpMinor
  • High-resolution mapping of DNA copy alterations in human chromosome 22 using high-density tiling oligonucleotide arrays.
    Proc Natl Acad Sci U S A, Vol. 103, No. 12. (21 March 2006), pp. 4534-4539.
    by AE Urban, JO Korbel, R Selzer, T Richmond, A Hacker, GV Popescu, JF Cubells, R Green, BS Emanuel, MB Gerstein, SM Weissman, M Snyder
    posted to tiling microarray human cnp cgh by waszak on 2008-10-08 15:04:44 as ** along with 1 person and 1 group rdiaz Bioinformatics
  • High-resolution mapping of meiotic crossovers and non-crossovers in yeast
    Nature (09 July 2008)
    by Eugenio Mancera, Richard Bourgon, Alessandro Brozzi, Wolfgang Huber, Lars M Steinmetz
    posted to yeast tiling scerevisiae recombination microarray linkage by waszak on 2008-10-08 15:03:21 as ** along with 8 people abrozzi Hans45 raiyar caseybrown djkt bpcusack jasontsai madhadron
  • QuantiSNP: an Objective Bayes Hidden-Markov Model to detect and accurately map copy number variation using SNP genotyping data.
    Nucleic Acids Res (27 March 2007)
    by Stefano Colella, Christopher Yau, Jennifer M M Taylor, Ghazala Mirza, Helen Butler, Penny Clouston, Anne S S Bassett, Anneke Seller, Christopher C C Holmes, Jiannis Ragoussis
    posted to snp microarray hmm genotyping cnv bayes algorithm by waszak on 2008-10-08 14:42:05 as ** along with 4 people and 2 groups druvus psique caldavis jfr parkinson's disease references Bioinformatics
  • Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays
    Genome Res., Vol. 16, No. 12. (1 December 2006), pp. 1575-1584.
    by Daisuke Komura, Fan Shen, Shumpei Ishikawa, Karen R Fitch, Wenwei Chen, Jane Zhang, Guoying Liu, Sigeo Ihara, Hiroshi Nakamura, Matthew E Hurles, Charles Lee, Stephen W Scherer, Keith W Jones, Michael H Shapero, Jing Huang, Hiroyuki Aburatani
    posted to snp microarray human genome cnv algorithm affymetrix by waszak on 2008-10-08 14:40:40 as ** along with 8 people and 4 groups jfr dchughes giovanni jeremymiller frohike vpschulz shigepong debasis Bioinformatics G4ID GeschwindLab Genetics-of-Gambling
  • Reduction of endogenous angiogenesis inhibitors in Bruch's membrane of the submacular region in eyes with age-related macular degeneration.
    Archives of ophthalmology, Vol. 126, No. 5. (May 2008), pp. 670-678.
    by IA Bhutto, K Uno, C Merges, L Zhang, DS McLeod, GA Lutty
    posted to microarray cnv by waszak on 2008-10-08 13:30:49 as *****
  • Implications of bevacizumab on VEGF and endostatin in human choroidal neovascularization.
    The British journal of ophthalmology (6 October 2008)
    by Olcay Tatar, Kei Shinoda, Edwin Kaiserling, Carl Claes, Claus Eckardt, Tillmann Eckert, Vicky Boeyden, Grazia Pertile, Efdal Yoeruek, Peter Szurman, Karl U U Bartz-Schmidt, Salvatore Grisanti
    posted to microarray cnv by waszak on 2008-10-08 13:21:49 as **
  • Effect of polymorphisms within probe-target sequences on olignonucleotide microarray experiments
    Nucl. Acids Res., Vol. 36, No. 13. (1 August 2008), pp. 4417-4423.
    by David Benovoy, Tony Kwan, Jacek Majewski
    posted to snp microarray exon csh affymetrix by waszak on 2008-10-07 22:40:50 as ** along with 3 people jfr GeeSharpMinor caseybrown
  • Relative Impact of Nucleotide and Copy Number Variation on Gene Expression Phenotypes
    Science, Vol. 315, No. 5813. (9 February 2007), pp. 848-853.
    by Barbara E Stranger, Matthew S Forrest, Mark Dunning, Catherine E Ingle, Claude Beazley, Natalie Thorne, Richard Redon, Christine P Bird, Anna de Grassi, Charles Lee, Chris Tyler-Smith, Nigel Carter, Stephen W Scherer, Simon Tavare, Panagiotis Deloukas, Matthew E Hurles, Emmanouil T Dermitzakis
    posted to tiling microarray embl cnv by waszak on 2008-10-07 21:05:05 as ** along with 19 people and 3 groups daed psique jo_davies srp33 jyuh jfr dpollard balicea rdiaz qfwills djkt vplagnol shigepong jlangdon xingxu cisevol caseybrown frohike jandot Bioinformatics EisenLab cis-regulatory-evolution
  • Modeling of DNA microarray data by using physical properties of hybridization
    Proceedings of the National Academy of Sciences, Vol. 100, No. 13. (24 June 2003), pp. 7575-7580.
    by GA Held, G Grinstein, Y Tu
    posted to microarray hybridization by waszak on 2008-09-29 15:25:43 as ** along with 1 person talponer
  • A probabilistic generative model for GO enrichment analysis
    Nucl. Acids Res. (1 August 2008), gkn434.
    by Yong Lu, Roni Rosenfeld, Itamar Simon, Gerard J Nau, Ziv Bar-Joseph
    posted to software microarray go algorithm by waszak on 2008-09-28 20:06:37 as ** along with 9 people jyuh inesdesantiago yaredo rdiaz paszkows barriot tmmurali raiyar jandot
  • Identification of immune genes and proteins involved in the response of bovine mammary tissue to Staphylococcus aureus infection
    BMC Veterinary Research, Vol. 4 (02 June 2008), 18.
    by Ylva, Laurelea Donaldson, Christian P Gray, Tony Vuocolo, Roger Pearson, Antonio Reverter, Keren A Byrne, Paul Sheehy, Ross Windon, Ross L Tellam
    posted to bovine infection microarray saureus by waszak on 2008-08-27 01:30:02 as **
  • SOAP: short oligonucleotide alignment program.
    Bioinformatics (28 January 2008)
    by Ruiqiang Li, Yingrui Li, Karsten Kristiansen, Jun Wang
    posted to alignment microarray by waszak on 2008-08-18 14:35:44 as ** along with 11 people orzenil pengchy umit jyuh ghattem GustavoLacerda niallhaslam mdimon caseybrown urgi bozdagd
  • xMAN: extreme MApping of OligoNucleotides
    BMC Genomics, Vol. 9, No. Suppl 1. (2008)
    by Wei Li, Jason Carroll, Myles Brown, Shirley X Liu
    posted to algorithm microarray python by waszak on 2008-08-16 18:50:45 as ** along with 1 person umit
  • Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data
    Nucleic Acids Research, Vol. 33, No. 20. (2005), pp. e175-e175.
    by Manhong Dai, Pinglang Wang, Andrew D Boyd, Georgi Kostov, Brian Athey, Edward G Jones, William E Bunney, Richard M Myers, Terry P Speed, Huda Akil, Stanley J Watson, Fan Meng
    posted to affymetrix genechip microarray by waszak on 2008-08-16 01:09:07 as ** along with 9 people and 2 groups giovenko pcahan1 frohike incovoma nicholso heliopais Montrachet shikin bertelsen Bioinformatics GeneGo
  • SeqMap : mapping massive amount of oligonucleotides to the genome
    Bioinformatics (12 August 2008), btn429.
    by Hui Jiang, Wing H Wong
    posted to alignment microarray by waszak on 2008-08-15 15:31:51 as ** along with 5 people jyuh nuin Zigster pengchy cthachuk
  • An improved physico-chemical model of hybridization on high-density oligonucleotide microarrays
    Bioinformatics, Vol. 24, No. 10. (15 May 2008), pp. 1278-1285.
    by Naoaki Ono, Shingo Suzuki, Chikara Furusawa, Tomoharu Agata, Akiko Kashiwagi, Hiroshi Shimizu, Tetsuya Yomo
    posted to algorithm microarray normalization r by waszak on 2008-05-17 18:08:10 as ** along with 2 people heliopais giovenko
  • Design Logic of a Cannabinoid Receptor Signaling Network That Triggers Neurite Outgrowth
    Science, Vol. 320, No. 5878. (16 May 2008), pp. 903-909.
    by Kenneth D Bromberg, Avi Ma'ayan, Susana R Neves, Ravi Iyengar
    posted to microarray networks tf by waszak on 2008-05-17 11:24:08 as ** along with 3 people AlexanderPico caseybrown oelemento
  • Clinicopathologic Correlation of Up-regulated Genes Identified Using cDNA Microarray and Real-time Reverse Transcription-PCR in Human Colorectal Cancer
    Cancer Epidemiol Biomarkers Prev, Vol. 14, No. 2. (1 February 2005), pp. 437-443.
    by Sou-Tyau Chiu, Fon-Jou Hsieh, Shi-Wen Chen, Chun-Lieh Chen, Hwei-Fan Shu, Hung Li
    posted to cancer correlation microarray by waszak on 2008-02-19 22:22:05 as **
  • Microarrays in breast cancer research and clinical practice--the future lies ahead.
    Endocr Relat Cancer, Vol. 13, No. 4. (December 2006), pp. 1017-1031.
    by SK Gruvberger-Saal, HE Cunliffe, KM Carr, IA Hedenfalk
    posted to cancer clinical microarray review by waszak on 2008-02-19 22:20:20 as ** along with 2 people jfr fishtank
  • Gene expression profiling of colon cancer by DNA microarrays and correlation with histoclinical parameters.
    Oncogene, Vol. 23, No. 7. (19 February 2004), pp. 1377-1391.
    by F Bertucci, S Salas, S Eysteries, V Nasser, P Finetti, C Ginestier, E Charafe-Jauffret, B Loriod, L Bachelart, J Montfort, G Victorero, F Viret, V Ollendorff, V Fert, M Giovaninni, JR Delpero, C Nguyen, P Viens, G Monges, D Birnbaum, R Houlgatte
    posted to cancer correlation microarray by waszak on 2008-02-19 21:45:46 as **
  • Identification of SP5 as a downstream gene of the beta-catenin/Tcf pathway and its enhanced expression in human colon cancer.
    Int J Oncol, Vol. 27, No. 6. (December 2005), pp. 1483-1487.
    by M Takahashi, Y Nakamura, K Obama, Y Furukawa
    posted to beta-catenin cancer colon microarray pathway tcf by waszak on 2008-02-06 11:56:47 as **
  • Getting started in tiling microarray analysis.
    PLoS Comput Biol, Vol. 3, No. 10. (26 October 2007), pp. 1842-1844.
    by XS Liu
    posted to microarray review tiling by waszak on 2008-02-01 15:24:51 as *** along with 7 people emptyhb cassj jfr cabbagezs yevishere Ayest GeeSharpMinor
  • Signature Evaluation Tool (SET): a Java-based tool to evaluate and visualize the sample discrimination abilities of gene expression signatures
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Chih H Jen, Tsun P Yang, Chien Y Tung, Shu H Su, Chi H Lin, Ming T Hsu, Hsei W Wang
    posted to discrimination microarray signature software by waszak on 2008-02-01 09:54:09 as ** along with 4 people and 2 groups Zephyrus jfr frohike jyuh Roswell Cancer Crosstalk Breast Cancer Reading Club
  • Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA
    BMC Biotechnology, Vol. 7 (13 September 2007), 57.
    by Karol L Thompson, Scott P Pine, Barry A Rosenzweig, Yaron Turpaz, Jacques Retief
    posted to affymetrix microarray quality rna by waszak on 2008-01-30 14:02:28 as ** along with 2 people jfr caseybrown
  • Visualization methods for statistical analysis of microarray clusters.
    BMC Bioinformatics, Vol. 6 (2005)
    by MA Hibbs, NC Dirksen, K Li, OG Troyanskaya
    posted to clustering microarray software by waszak on 2007-12-25 15:58:25 as ** along with 5 people jyuh jfr maryee smbaxtersf ndiaz
  • MDQC: a new quality assessment method for microarrays based on quality control reports
    Bioinformatics, Vol. 23, No. 23. (1 December 2007), pp. 3162-3169.
    by Cohen, Zsuzsanna Hollander, Enqing Shen, Ruben H Zamar, Robert Balshaw, Andreas Scherer, Bruce Mcmanus, Paul Keown, Robert W Mcmaster, Raymond T Ng
    posted to microarray quality r software by waszak on 2007-12-10 14:29:13 as ** along with 2 people jyuh aviad_work
  • GSEA-P: A desktop application for Gene Set Enrichment Analysis
    Bioinformatics (20 July 2007), btm369.
    by Aravind Subramanian, Heidi Kuehn, Joshua Gould, Pablo Tamayo, Jill P Mesirov
    posted to gsea microarray networks software by waszak on 2007-12-09 17:08:13 as ** along with 8 people and 1 group jyuh cassj ealloza schuylrp barriot dmontaner Eugene heliopais BioinfoCIPF
  • Extracting Three-way Gene Interactions from Microarray Data.
    Bioinformatics (5 October 2007)
    by Jiexin Zhang, Yuan Ji, Li Zhang
    posted to microarray networks by waszak on 2007-11-16 09:41:28 as ** along with 3 people tmmurali jfr shigepong
  • Construction, Visualisation, and Clustering of Transcription Networks from Microarray Expression Data
    PLoS Computational Biology, Vol. 3, No. 10. (1 October 2007), e206.
    by Tom C Freeman, Leon Goldovsky, Markus Brosch, Stijn van Dongen, Pierre Mazière, Russell J Grocock, Shiri Freilich, Janet Thornton, Anton J Enright
    posted to clustering microarray networks by waszak on 2007-11-16 09:38:12 as **** along with 7 people nolodie jyuh jfr sebastien_vigneau giovanni shigepong heliopais
  • Simultaneous clustering of gene expression data with clinical chemistry and pathological evaluations reveals phenotypic prototypes.
    BMC Syst Biol, Vol. 1 (2007)
    by PR Bushel, RD Wolfinger, G Gibson
    posted to affymetrix microarray software by waszak on 2007-11-14 11:00:55 as ** along with 1 person jfr
  • Mining microarray data at NCBI's Gene Expression Omnibus (GEO)*.
    Methods Mol Biol, Vol. 338 (2006), pp. 175-190.
    by T Barrett, R Edgar
    posted to database microarray by waszak on 2007-11-13 22:09:40 as * along with 6 people giovenko jyuh frohike hpiwowar ablejec zhouyu
  • A search engine to identify pathway genes from expression data on multiple organisms
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Chunnuan Chen, Matthew Weirauch, Corey Powell, Alexander Zambon, Joshua Stuart
    posted to microarray pathway software by waszak on 2007-11-13 21:56:28 as ***** along with 6 people and 1 group tharris jyuh tmmurali jfr rsandie AlexanderPico C. elegans / WormBase
  • BNArray: an R package for constructing gene regulatory networks from microarray data by using Bayesian network.
    Bioinformatics (27 September 2006)
    by Xiaohui Chen, Ming Chen, Kaida Ning
    posted to microarray networks r software by waszak on 2007-11-13 21:54:53 as ** along with 6 people jyuh wnpx frohike jhatrimatri shigepong ramakris
  • The Gaggle: an open-source software system for integrating bioinformatics software and data sources.
    BMC Bioinformatics, Vol. 7 (2006)
    by PT Shannon, DJ Reiss, R Bonneau, NS Baliga
    posted to bioinformatics microarray software by waszak on 2007-11-13 21:49:45 as **** along with 8 people and 2 groups jyuh julius dullhunk frohike jmuhlich cerami pablomendes megraw SysbioMPI-TCells SorgerLab
  • RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis.
    Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2825-2827.
    by F Hong, R Breitling, CW McEntee, BS Wittner, JL Nemhauser, J Chory
    posted to affymetrix bioconductor microarray software by waszak on 2007-11-13 21:43:39 as *** along with 2 people jfr sanchezbuelna
  • Array2BIO: from microarray expression data to functional annotation of co-regulated genes
    BMC Bioinformatics, Vol. 7 (16 June 2006), 307.
    by Gabriela G Loots, Patrick SG Chain, Shalini Mabery, Amy Rasley, Emilio Garcia, Ivan Ovcharenko
    posted to management microarray software by waszak on 2007-11-13 21:42:06 as **** along with 2 people bsamal jfr
  • CoXpress: differential co-expression in gene expression data
    BMC Bioinformatics, Vol. 7 (20 November 2006), 509.
    by Michael Watson
    posted to affymetrix co-expression microarray networks software statistics by waszak on 2007-11-13 21:28:58 as ***** along with 5 people jfr dquest shigepong dps gabe_rosser
  • SIGMA: A System for Integrative Genomic Microarray Analysis of Cancer Genomes
    BMC Genomics, Vol. 7 (27 December 2006), 324.
    by Raj Chari, William W Lockwood, Bradley P Coe, Anna Chu, Devon Macey, Andrew Thomson, Jonathan J Davies, Calum Macaulay, Wan L Lam
    posted to cgh microarray software by waszak on 2007-11-13 21:23:48 as ** along with 2 people jfr blackm0k
  • GGtools: analysis of genetics of gene expression in bioconductor.
    Bioinformatics, Vol. 23, No. 4. (15 February 2007), pp. 522-523.
    by VJ Carey, M Morgan, S Falcon, R Lazarus, R Gentleman
    posted to affymetrix bioconductor microarray software by waszak on 2007-11-13 21:12:54 as ** along with 3 people jyuh jfr sanchezbuelna
  • Eu.Gene Analyzer a tool for integrating gene expression data with pathway databases.
    Bioinformatics (28 June 2007)
    by Duccio Cavalieri, Cinzia Castagnini, Simona Toti, Karolina Maciag, Thomas Kelder, Luca Gambineri, Samuele Angioli, Piero Dolara
    posted to microarray pathway software by waszak on 2007-11-13 21:06:24 as ** along with 6 people jyuh tmmurali jfr aviad_work AlexanderPico thomaskelder
  • Cerebral: a Cytoscape plugin for layout of and interaction with biological networks using subcellular localization annotation.
    Bioinformatics (19 February 2007)
    by Aaron Barsky, Jennifer L L Gardy, Robert E W E Hancock, Tamara Munzner
    posted to microarray networks software by waszak on 2007-11-13 21:04:33 as ** along with 2 people jyuh ghattem
  • Improving comparability between microarray probe signals by thermodynamic intensity correction.
    Nucleic Acids Res (2 March 2007)
    by Georg M M Bruun, Rasmus Wernersson, Agnieszka S S Juncker, Hanni Willenbrock, Henrik Bjørn B Nielsen
    posted to algorithm microarray by waszak on 2007-11-13 21:00:51 as ** along with 5 people jyuh ghattem GeeSharpMinor talponer niallhaslam
  • Microarray Blob-Defect Removal Improves Array Analysis.
    Bioinformatics (1 March 2007)
    by Jun S S Song, Kaveh Maghsoudi, Wei Li, Edward Fox, John Quackenbush, X Shirley Liu
    posted to affymetrix microarray software tiling by waszak on 2007-11-13 20:57:22 as ** along with 5 people and 1 group jfr kengg shigepong ghattem caseybrown Plantandetc
  • How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different results.
    BMC Bioinformatics, Vol. 7 (2006)
    by FF Millenaar, J Okyere, ST May, M van Zanten, LA Voesenek, AJ Peeters
    posted to affymetrix microarray statistics by waszak on 2007-11-13 20:56:03 as ** along with 7 people heliopais GeeSharpMinor gabe_rosser jfr neveaire ghattem pure39
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