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waszak's affymetrix [32 articles]

当前文献位于 waszak's 文献库 标签分类为 affymetrix. You can also see everyone's affymetrix.
  • Regulation of rtt107 recruitment to stalled DNA replication forks by the cullin rtt101 and the rtt109 acetyltransferase.
    Molecular biology of the cell, Vol. 19, No. 1. (January 2008), pp. 171-180.
    by TM Roberts, IW Zaidi, JA Vaisica, M Peter, GW Brown
    posted to yeast tiling microarray affymetrix by waszak on 2008-10-08 17:43:34 as **
  • Integrated detection and population-genetic analysis of SNPs and copy number variation.
    Nature genetics (7 September 2008)
    by Steven A A McCarroll, Finny G G Kuruvilla, Joshua M M Korn, Simon Cawley, James Nemesh, Alec Wysoker, Michael H H Shapero, Paul I W I de Bakker, Julian B B Maller, Andrew Kirby, Amanda L L Elliott, Melissa Parkin, Earl Hubbell, Teresa Webster, Rui Mei, James Veitch, Patrick J J Collins, Robert Handsaker, Steve Lincoln, Marcia Nizzari, John Blume, Keith W W Jones, Rich Rava, Mark J J Daly, Stacey B B Gabriel, David Altshuler
    posted to snp hapmap genetics cnv affymetrix by waszak on 2008-10-08 15:11:10 as ** along with 13 people and 1 group pdexheimer madreach caseybrown rsantana Zephyrus psique jbsaltz Ema misonneh djkt daed rdiaz jyuh Roswell Cancer Crosstalk
  • A robust statistical method for case-control association testing with copy number variation.
    Nature genetics (7 September 2008)
    by Chris Barnes, Vincent Plagnol, Tomas Fitzgerald, Richard Redon, Jonathan Marchini, David Clayton, Matthew E E Hurles
    posted to software snp r ld gmm em cnv associationstudy algorithm affymetrix by waszak on 2008-10-08 15:01:08 as ** along with 12 people and 1 group pengchy ptrobajo vplagnol caseybrown Zephyrus dakelley buyske misonneh djkt rdiaz Stew jyuh Roswell Cancer Crosstalk
  • Genome-wide detection of human copy number variations using high-density DNA oligonucleotide arrays
    Genome Res., Vol. 16, No. 12. (1 December 2006), pp. 1575-1584.
    by Daisuke Komura, Fan Shen, Shumpei Ishikawa, Karen R Fitch, Wenwei Chen, Jane Zhang, Guoying Liu, Sigeo Ihara, Hiroshi Nakamura, Matthew E Hurles, Charles Lee, Stephen W Scherer, Keith W Jones, Michael H Shapero, Jing Huang, Hiroyuki Aburatani
    posted to snp microarray human genome cnv algorithm affymetrix by waszak on 2008-10-08 14:40:40 as ** along with 8 people and 4 groups jfr dchughes giovanni jeremymiller frohike vpschulz shigepong debasis Bioinformatics G4ID GeschwindLab Genetics-of-Gambling
  • Effect of polymorphisms within probe-target sequences on olignonucleotide microarray experiments
    Nucl. Acids Res., Vol. 36, No. 13. (1 August 2008), pp. 4417-4423.
    by David Benovoy, Tony Kwan, Jacek Majewski
    posted to snp microarray exon csh affymetrix by waszak on 2008-10-07 22:40:50 as ** along with 3 people jfr GeeSharpMinor caseybrown
  • Evolving gene/transcript definitions significantly alter the interpretation of GeneChip data
    Nucleic Acids Research, Vol. 33, No. 20. (2005), pp. e175-e175.
    by Manhong Dai, Pinglang Wang, Andrew D Boyd, Georgi Kostov, Brian Athey, Edward G Jones, William E Bunney, Richard M Myers, Terry P Speed, Huda Akil, Stanley J Watson, Fan Meng
    posted to affymetrix genechip microarray by waszak on 2008-08-16 01:09:07 as ** along with 9 people and 2 groups giovenko pcahan1 frohike incovoma nicholso heliopais Montrachet shikin bertelsen Bioinformatics GeneGo
  • Probe selection and expression index computation of affymetrix exon arrays.
    PLoS ONE, Vol. 1 (2006)
    by Y Xing, K Kapur, WH Wong
    posted to affymetrix algorithm huex hugene by waszak on 2008-08-15 15:50:05 as ** along with 1 person jfr
  • Alternative splicing in colon, bladder, and prostate cancer identified by exon-array analysis
    Mol Cell Proteomics (18 March 2008), M700590-MCP200.
    by Kasper Thorsen, Karina D Sorensen, Anne S Brems-Eskildsen, Charlotte Modin, Mette Gaustadnes, Anne-Mette K Hein, Mogens Kruhoffer, Soren Laurberg, Michael Borre, Kai Wang, Soren Brunak, Adrian R Krainer, Niels Torring, Lars Dyrskjot, Claus L Andersen, Torben F Orntoft
    posted to affymetrix cancer hugene splicing by waszak on 2008-04-10 16:54:10 as ** along with 2 people jo_davies jfr
  • Polymorphism Interaction Analysis (PIA): a method for investigating complex gene-gene interactions
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Leah Mechanic, Brian Luke, Julie Goodman, Stephen Chanock, Curtis Harris
    posted to affymetrix algorithm snps by waszak on 2008-03-07 09:32:25 as ** along with 2 people jyuh omalbam
  • Normalization of oligonucleotide arrays based on the least-variant set of genes
    BMC Bioinformatics, Vol. 9 (05 March 2008), 140.
    by Stefano Calza, Davide Valentini, Yudi Pawitan
    posted to affymetrix algorithm normalization by waszak on 2008-03-07 09:32:06 as ** along with 4 people jyuh jfr giovenko GeeSharpMinor
  • Preferred analysis methods for Affymetrix GeneChips revealed by a wholly defined control dataset.
    Genome Biol, Vol. 6, No. 2. (2005)
    by SE Choe, M Boutros, AM Michelson, GM Church, MS Halfon
    posted to affymetrix analysis genechip methodology by waszak on 2008-01-30 14:59:12 as ** along with 6 people and 1 group heliopais xwbcn jeremymiller ccr ghattem daforerog GeschwindLab
  • A comparison of Affymetrix gene expression arrays
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Mark Robinson, Terence Speed
    posted to affymetrix exon huex hugene by waszak on 2008-01-30 14:06:16 as ** along with 2 people jfr hpaces
  • Alternative splicing and differential gene expression in colon cancer detected by a whole genome exon array
    BMC Genomics, Vol. 7 (27 December 2006), 325.
    by Paul J Gardina, Tyson A Clark, Brian Shimada, Michelle K Staples, Qing Yang, James Veitch, Anthony Schweitzer, Tarif Awad, Charles Sugnet, Suzanne Dee, Christopher Davies, Alan Williams, Yaron Turpaz
    posted to affymetrix cancer colon exon splicing by waszak on 2008-01-30 14:04:56 as ** along with 2 people jfr srp33
  • Characterization of the effect of sample quality on high density oligonucleotide microarray data using progressively degraded rat liver RNA
    BMC Biotechnology, Vol. 7 (13 September 2007), 57.
    by Karol L Thompson, Scott P Pine, Barry A Rosenzweig, Yaron Turpaz, Jacques Retief
    posted to affymetrix microarray quality rna by waszak on 2008-01-30 14:02:28 as ** along with 2 people jfr caseybrown
  • oneChannelGUI: a graphical interface to Bioconductor tools, designed for life scientists who are not familiar with R language
    Bioinformatics (17 September 2007), btm469.
    by Remo Sanges, Francesca Cordero, Raffaele A Calogero
    posted to affymetrix bioconductor r software by waszak on 2007-12-10 14:27:34 as ** along with 2 people jyuh rdiaz
  • The utility of MAS5 expression summary and detection call algorithms
    BMC Bioinformatics, Vol. 8, No. 1. (2007)
    by Stuart Pepper, Emma Saunders, Laura Edwards, Claire Wilson, Crispin Miller
    posted to affymetrix algorithm normalization by waszak on 2007-12-03 21:08:03 as ** along with 4 people heliopais jfr ryanraaum wirawan
  • RReportGenerator : Automatic reports from routine statistical analysis using R
    Bioinformatics (24 November 2007), btm556.
    by Wolfgang Raffelsberger, Yannick Krause, Luc Moulinier, David Kieffer, Anne-Laure Morand, Laurent Brino, Olivier Poch
    posted to affymetrix r by waszak on 2007-12-03 20:39:09 as ** along with 7 people natstreet druvus jyuh jfr mailund maralena GeeSharpMinor
  • Filtering genes to improve sensitivity in oligonucleotide microarray data analysis.
    Nucleic Acids Res (15 August 2007)
    by Stefano Calza, Wolfgang Raffelsberger, Alexander Ploner, Jose Sahel, Thierry Leveillard, Yudi Pawitan
    posted to affymetrix normalization by waszak on 2007-12-03 20:18:23 as ** along with 7 people heliopais frohike jyuh jfr rdiaz niallhaslam laral
  • BGX: a Bioconductor package for the Bayesian integrated analysis of Affymetrix GeneChips
    BMC Bioinformatics, Vol. 8 (12 November 2007), 439.
    by Ernest Turro, Natalia Bochkina, Anne-Mette K Hein, Sylvia Richardson
    posted to affymetrix algorithm bayesian bioconductor bioinformatics software statistics by waszak on 2007-11-16 09:35:31 as ***** along with 3 people jyuh jfr shigepong
  • Simultaneous clustering of gene expression data with clinical chemistry and pathological evaluations reveals phenotypic prototypes.
    BMC Syst Biol, Vol. 1 (2007)
    by PR Bushel, RD Wolfinger, G Gibson
    posted to affymetrix microarray software by waszak on 2007-11-14 11:00:55 as ** along with 1 person jfr
  • RankProd: a bioconductor package for detecting differentially expressed genes in meta-analysis.
    Bioinformatics, Vol. 22, No. 22. (15 November 2006), pp. 2825-2827.
    by F Hong, R Breitling, CW McEntee, BS Wittner, JL Nemhauser, J Chory
    posted to affymetrix bioconductor microarray software by waszak on 2007-11-13 21:43:39 as *** along with 2 people jfr sanchezbuelna
  • CoXpress: differential co-expression in gene expression data
    BMC Bioinformatics, Vol. 7 (20 November 2006), 509.
    by Michael Watson
    posted to affymetrix co-expression microarray networks software statistics by waszak on 2007-11-13 21:28:58 as ***** along with 5 people jfr dquest shigepong dps gabe_rosser
  • GGtools: analysis of genetics of gene expression in bioconductor.
    Bioinformatics, Vol. 23, No. 4. (15 February 2007), pp. 522-523.
    by VJ Carey, M Morgan, S Falcon, R Lazarus, R Gentleman
    posted to affymetrix bioconductor microarray software by waszak on 2007-11-13 21:12:54 as ** along with 3 people jyuh jfr sanchezbuelna
  • Microarray Blob-Defect Removal Improves Array Analysis.
    Bioinformatics (1 March 2007)
    by Jun S S Song, Kaveh Maghsoudi, Wei Li, Edward Fox, John Quackenbush, X Shirley Liu
    posted to affymetrix microarray software tiling by waszak on 2007-11-13 20:57:22 as ** along with 5 people and 1 group jfr kengg shigepong ghattem caseybrown Plantandetc
  • How to decide? Different methods of calculating gene expression from short oligonucleotide array data will give different results.
    BMC Bioinformatics, Vol. 7 (2006)
    by FF Millenaar, J Okyere, ST May, M van Zanten, LA Voesenek, AJ Peeters
    posted to affymetrix microarray statistics by waszak on 2007-11-13 20:56:03 as ** along with 7 people heliopais GeeSharpMinor gabe_rosser jfr neveaire ghattem pure39
  • Impact of RNA degradation on gene expression profiles: assessment of different methods to reliably determine RNA quality.
    J Biotechnol, Vol. 127, No. 4. (20 January 2007), pp. 549-559.
    by V Copois, F Bibeau, C Bascoul-Mollevi, N Salvetat, P Chalbos, C Bareil, L Candeil, C Fraslon, E Conseiller, V Granci, P Mazière, A Kramar, M Ychou, B Pau, P Martineau, F Molina, M Del Rio
    posted to affymetrix microarray qc by waszak on 2007-11-13 20:14:04 as ** along with 3 people jfr ghattem bertelsen
  • An application for assessing quality of RNA hybridized to Affymetrix GeneChips.
    Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2699-2701.
    by KJ Archer, T Guennel
    posted to affymetrix microarray qc statistics by waszak on 2007-11-13 20:12:18 as ** along with 2 people jfr ghattem
  • Trends in the quality of data from 5168 oligonucleotide microarrays from a single facility.
    J Biomol Tech, Vol. 16, No. 2. (June 2005), pp. 143-153.
    by DB Finkelstein
    posted to affymetrix microarray qc statistics by waszak on 2007-11-13 20:09:49 as ** along with 1 person ghattem
  • Evaluation of quality-control criteria for microarray gene expression analysis.
    Clin Chem, Vol. 50, No. 11. (November 2004), pp. 1994-2002.
    by CI Dumur, S Nasim, AM Best, KJ Archer, AC Ladd, VR Mas, DS Wilkinson, CT Garrett, A Ferreira-Gonzalez
    posted to affymetrix microarray qc by waszak on 2007-11-13 20:08:06 as ** along with 1 person ghattem
  • Explaining differences in saturation levels for Affymetrix GeneChip(R) arrays.
    Nucleic Acids Res (12 June 2007)
    by Dmitriy Skvortsov, Diana Abdueva, Christina Curtis, Betty Schaub, Simon Tavaré
    posted to affymetrix microarray by waszak on 2007-11-13 20:05:20 as ** along with 6 people jfr gpalidwor sebastien_vigneau ghattem ptrobajo bertelsen
  • Summaries of Affymetrix GeneChip probe level data.
    Nucleic Acids Res, Vol. 31, No. 4. (15 February 2003)
    by RA Irizarry, BM Bolstad, F Collin, LM Cope, B Hobbs, TP Speed
    posted to affymetrix microarray rma statistics by waszak on 2007-11-13 20:03:20 as ** along with 11 people pcahan1 RMGraze aviad_work vplagnol ghattem talponer heliopais wirawan rschulz bertelsen srp33
  • Effects of filtering by Present call on analysis of microarray experiments.
    BMC Bioinformatics, Vol. 7 (2006)
    by JN McClintick, HJ Edenberg
    posted to affymetrix microarray statistics by waszak on 2007-11-13 19:52:51 as *** along with 3 people heliopais ghattem yevishere
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