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ujh's library [76 articles]

最近录入 ujh's 文献库.
  • Diversification of transcriptional modulation: Large-scale identification and characterization of putative alternative promoters of human genes.
    Genome Res (12 December 2005)
    by Kouichi Kimura, Ai Wakamatsu, Yutaka Suzuki, Toshio Ota, Tetsuo Nishikawa, Riu Yamashita, Jun-Ichi I Yamamoto, Mitsuo Sekine, Katsuki Tsuritani, Hiroyuki Wakaguri, Shizuko Ishii, Tomoyasu Sugiyama, Kaoru Saito, Yuko Isono, Ryotaro Irie, Norihiro Kushida, Takahiro Yoneyama, Rie Otsuka, Katsuhiro Kanda, Takahide Yokoi, Hiroshi Kondo, Masako Wagatsuma, Katsuji Murakawa, Shinichi Ishida, Tadashi Ishibashi, Asako Takahashi-Fujii, Tomoo Tanase, Keiichi Nagai, Hisashi Kikuchi, Kenta Nakai, Takao Isogai, Sumio Sugano
    posted to alternative pap promoter splicing by ujh on 2005-12-23 09:43:19 as read along with 7 people bethsabrina yoanjacquemin textoris troels_marstrand olympos nosada17 antonkratz
  • A bipartite sequence element associated with matrix/scaffold attachment regions.
    Nucleic Acids Res, Vol. 27, No. 14. (15 July 1999), pp. 2924-2930.
    by CM van Drunen, RG Sewalt, RW Oosterling, PJ Weisbeek, SC Smeekens, R van Driel
    posted to mar smar by ujh on 2005-12-12 12:10:15 as read
  • In silico prediction of scaffold/matrix attachment regions in large genomic sequences.
    Genome Res, Vol. 12, No. 2. (February 2002), pp. 349-354.
    by M Frisch, K Frech, A Klingenhoff, K Cartharius, I Liebich, T Werner
    posted to mar smar by ujh on 2005-12-08 18:08:16 as read along with 1 person textoris
  • Large-scale identification and mapping of nuclear matrix-attachment regions in the distal imprinted domain of mouse chromosome 7.
    DNA Res, Vol. 11, No. 6. (31 December 2004), pp. 391-407.
    by W Purbowasito, C Suda, T Yokomine, M Zubair, T Sado, K Tsutsui, H Sasaki
    posted to mar mouse smar by ujh on 2005-12-06 08:44:59 as read
  • Mining sequence annotation databanks for association patterns.
    Bioinformatics, Vol. 21, No. Suppl_3. (1 November 2005)
    by Irena I I Artamonova, Goar Frishman, Mikhail S S Gelfand, Dmitrij Frishman
    posted to association data learning machine mining rule by ujh on 2005-11-26 12:04:43 as *****
  • Genome-wide in silico mapping of scaffold/matrix attachment regions in Arabidopsis suggests correlation of intragenic scaffold/matrix attachment regions with gene expression.
    Plant Physiol, Vol. 135, No. 2. (June 2004), pp. 715-722.
    by S Rudd, M Frisch, K Grote, BC Meyers, K Mayer, T Werner
    posted to attachement mar matrix region by ujh on 2005-11-21 14:21:06 as read along with 1 person textoris
  • A significant fraction of conserved noncoding DNA in human and mouse consists of predicted matrix attachment regions.
    Trends Genet, Vol. 19, No. 3. (March 2003), pp. 119-124.
    by GV Glazko, EV Koonin, IB Rogozin, SA Shabalina
    posted to attachement mar matrix region by ujh on 2005-11-21 14:20:38 as ***** along with 1 person textoris
  • Stable high-level transgene expression in Arabidopsis thaliana using gene silencing mutants and matrix attachment regions.
    Plant J, Vol. 39, No. 3. (August 2004), pp. 440-449.
    by KM Butaye, IJ Goderis, PF Wouters, JM Pues, SL Delauré, WF Broekaert, A Depicker, BP Cammue, MF De Bolle
    posted to attachement mar matrix region by ujh on 2005-11-21 14:20:15 as *****
  • Characterization of randomly-obtained matrix attachment regions (MARs) from higher plants.
    Biochemistry, Vol. 38, No. 39. (28 September 1999), pp. 12795-12804.
    by SM Michalowski, GC Allen, GE Hall, WF Thompson, S Spiker
    posted to attachement mar matrix region by ujh on 2005-11-21 14:19:50 as *****
  • Scaffold/matrix-attached regions: topological switches with multiple regulatory functions.
    Crit Rev Eukaryot Gene Expr, Vol. 6, No. 2-3. (1996), pp. 115-138.
    by J Bode, M Stengert-Iber, V Kay, T Schlake, A Dietz-Pfeilstetter
    posted to attachement mar matrix region by ujh on 2005-11-21 14:19:22 as *****
  • Use of matrix attachment regions (MARs) to minimize transgene silencing.
    Plant Mol Biol, Vol. 43, No. 2-3. (June 2000), pp. 361-376.
    by GC Allen, S Spiker, WF Thompson
    posted to attachement mar matrix region by ujh on 2005-11-21 14:01:06 as ***** along with 1 person textoris
  • A computational investigation of kinetoplastid trans-splicing.
    Genome Biol, Vol. 6, No. 11. (2005)
    by S Gopal, S Awadalla, T Gaasterland, GA Cross
    posted to splicing trans-splicing by ujh on 2005-11-11 20:41:27 as **
  • Predicting non-coding RNA genes in Escherichia coli with boosted genetic programming.
    Nucleic Acids Res, Vol. 33, No. 10. (2005), pp. 3263-3270.
    by P Saetrom, R Sneve, KI Kristiansen, O Snøve, T Grünfeld, T Rognes, E Seeberg
    posted to genes genetic non-coding programming rna by ujh on 2005-06-25 13:03:58 as ** along with 2 people and 2 groups numata bsmagic Bioinformatics bioinplant
  • A decade of CASP: progress, bottlenecks and prognosis in protein structure prediction.
    Curr Opin Struct Biol (3 June 2005)
    by John Moult
    posted to prediction structure by ujh on 2005-06-11 11:51:12 as ** along with 9 people and 2 groups granujilla nigham thaliana warlock6x3 marcius ffranca j3xucite dgront mingzhi BioinfoCIPF SGU-CIPF
  • Machine Learning
    (01 October 1997)
    by Thomas Mitchell
    posted to data learning machine mining by ujh on 2005-06-03 17:00:34 as ** along with 11 people and 3 groups akastrin quianominorleo sb-3000 ryanshaw sdvillal gatsoulis Mohan-S wkiri aklassen singhsh jliegl sims_phd_cohort_2005 digital_youth Medical Image Analysis and Visualization @ OSU
  • Remote homology detection: a motif based approach.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by A Ben-Hur, D Brutlag
    posted to data learning machine mining by ujh on 2005-05-29 15:06:10 as ** along with 2 people and 1 group Cortel okarsligil Bioinformatics
  • Strong-association-rule mining for large-scale gene-expression data analysis: a case study on human SAGE data.
    Genome Biol, Vol. 3, No. 12. (2002)
    by C Becquet, S Blachon, B Jeudy, JF Boulicaut, O Gandrillon
    posted to association data learning machine mining rule by ujh on 2005-05-29 15:05:31 as ** along with 1 person srp33
  • Filtering erroneous protein annotation.
    Bioinformatics, Vol. 20 Suppl 1 (4 August 2004)
    by D Wieser, E Kretschmann, R Apweiler
    posted to data filtering learning machine mining by ujh on 2005-05-29 15:04:33 as **
  • Using Bayesian networks to analyze expression data
    (2000), pp. 127-135.
    by Nir Friedman, Michal Linial, Iftach Nachman, Dana Pe'er
    posted to bayesian data learning machine mining by ujh on 2005-05-29 15:03:21 as ** along with 2 people abhik wnpx
  • Multi-class protein fold recognition using support vector machines and neural networks.
    Bioinformatics, Vol. 17, No. 4. (April 2001), pp. 349-358.
    by CH Ding, I Dubchak
    posted to data learning machine mining network neural svm by ujh on 2005-05-29 15:01:44 as ** along with 2 people chad_davis craigtalbert
  • Boosting for tumor classification with gene expression data.
    Bioinformatics, Vol. 19, No. 9. (12 June 2003), pp. 1061-1069.
    by M Dettling, P Bühlmann
    posted to data learning machine mining by ujh on 2005-05-29 14:59:45 as **
  • Comparisons and validation of statistical clustering techniques for microarray gene expression data.
    Bioinformatics, Vol. 19, No. 4. (1 March 2003), pp. 459-466.
    by S Datta, S Datta
    posted to data learning machine microarray mining by ujh on 2005-05-29 14:58:30 as ** along with 6 people Yanno textoris tvdbulck bertelsen echsberde dps
  • Mining gene expression databases for association rules.
    Bioinformatics, Vol. 19, No. 1. (January 2003), pp. 79-86.
    by C Creighton, S Hanash
    posted to data learning machine mining by ujh on 2005-05-29 14:57:37 as **
  • CLICK and EXPANDER: a system for clustering and visualizing gene expression data.
    Bioinformatics, Vol. 19, No. 14. (22 September 2003), pp. 1787-1799.
    by R Sharan, A Maron-Katz, R Shamir
    posted to clustering data learning machine mining visualization by ujh on 2005-05-29 14:56:41 as ** along with 2 people maralena minostro
  • Decision tree-based formation of consensus protein secondary structure prediction.
    Bioinformatics, Vol. 15, No. 12. (December 1999), pp. 1039-1046.
    by J Selbig, T Mevissen, T Lengauer
    posted to data learning machine mining by ujh on 2005-05-29 14:55:39 as ** along with 1 person kaarsinogen
  • Predicting subcellular localization of proteins using machine-learned classifiers.
    Bioinformatics, Vol. 20, No. 4. (1 March 2004), pp. 547-556.
    by Z Lu, D Szafron, R Greiner, P Lu, DS Wishart, B Poulin, J Anvik, C Macdonell, R Eisner
    posted to data learning machine mining by ujh on 2005-05-29 14:54:28 as ** along with 1 person Cortel
  • Identifying good diagnostic gene groups from gene expression profiles using the concept of emerging patterns.
    Bioinformatics, Vol. 18, No. 5. (May 2002), pp. 725-734.
    by J Li, L Wong
    posted to data learning machine mining by ujh on 2005-05-29 14:53:39 as **
  • A comparative study of feature selection and multiclass classification methods for tissue classification based on gene expression.
    Bioinformatics, Vol. 20, No. 15. (12 October 2004), pp. 2429-2437.
    by T Li, C Zhang, M Ogihara
    posted to data learning machine mining by ujh on 2005-05-29 14:52:06 as ** along with 2 people srp33 chiahuey
  • Protein beta-turn prediction using nearest-neighbor method.
    Bioinformatics, Vol. 20, No. 1. (1 January 2004), pp. 40-44.
    by S Kim
    posted to data learning machine mining by ujh on 2005-05-29 14:50:37 as ** along with 1 person kallberg
  • Gene Selection for Cancer Classification using Support Vector Machines
    Machine Learning, Vol. 46, No. 1-3. (2002), pp. 389-422.
    by Isabelle Guyon, Jason Weston, Stephen Barnhill, Vladimir Vapnik
    posted to data learning machine mining svm by ujh on 2005-05-29 14:49:46 as ** along with 4 people gyuli chad_davis archroad jianrong
  • Comparison of statistical methods for classification of ovarian cancer using mass spectrometry data.
    Bioinformatics, Vol. 19, No. 13. (1 September 2003), pp. 1636-1643.
    by B Wu, T Abbott, D Fishman, W McMurray, G Mor, K Stone, D Ward, K Williams, H Zhao
    posted to data learning machine mining by ujh on 2005-05-29 14:47:15 as ** along with 1 person lp2
  • In silico protein recombination: enhancing template and sequence alignment selection for comparative protein modelling.
    J Mol Biol, Vol. 328, No. 3. (2 May 2003), pp. 593-608.
    by B Contreras-Moreira, PW Fitzjohn, PA Bates
    posted to algorithm bioinformatics comparative fold genetic modeling recognition selection template by ujh on 2005-05-21 15:01:12 as **** along with 1 person j3xucite
  • Novel use of a genetic algorithm for protein structure prediction: searching template and sequence alignment space.
    Proteins, Vol. 53 Suppl 6 (2003), pp. 424-429.
    by B Contreras-Moreira, PW Fitzjohn, M Offman, GR Smith, PA Bates
    posted to algorithm bioinformatics comparative fold genetic modeling recognition selection template by ujh on 2005-05-21 15:00:33 as ****
  • Ultraconserved elements in insect genomes: A highly conserved intronic sequence implicated in the control of homothorax mRNA splicing.
    Genome Res (17 May 2005)
    by Evgeny A A Glazov, Michael Pheasant, Elizabeth A A McGraw, Gill Bejerano, John S S Mattick
    posted to bioinformatics clustering dna insect non-coding by ujh on 2005-05-20 18:56:11 as **** along with 2 people and 1 group sujaikumar Stew EisenLab
  • Unix Power Tools, Third Edition
    (01 October 2002)
    by Shelley Powers, Tim O'Reilly, Mike Loukides
    posted to unix by ujh on 2005-05-15 12:38:15 as read along with 1 person reisender
  • The Pragmatic Programmer: From Journeyman to Master
    (20 October 1999)
    by Andrew Hunt, David Thomas
    posted to pragmatic by ujh on 2005-05-15 12:37:35 as read along with 12 people GuAlex ansobol turker creswick MRRHead lfk BarrosH fheintz aku8000 fsteeg mmeteo germoglio
  • Pragmatic Version Control Using CVS
    (30 September 2003)
    by Dave Thomas, Andy Hunt
    posted to cvs pragmatic vc by ujh on 2005-05-15 12:36:56 as read along with 3 people reisender 1101 pilho
  • Pragmatic Unit Testing in Java with JUnit
    (30 September 2003)
    by Andy Hunt, Dave Thomas
    posted to java pragmatic testing by ujh on 2005-05-15 12:35:45 as read
  • Pragmatic Project Automation: How to Build, Deploy, and Monitor Java Apps
    (03 August 2004)
    by Mike Clark
    posted to automation pragmatic by ujh on 2005-05-15 12:35:16 as read
  • lex & yacc, 2nd Edition (A Nutshell Handbook)
    (02 October 1992)
    by John Levine, Tony Mason, Doug Brown
    posted to compiler lex yacc by ujh on 2005-05-15 12:34:23 as read along with 1 person dullhunk
  • Programming Ruby: The Pragmatic Programmers' Guide, Second Edition
    (01 October 2004)
    by Dave Thomas, Chad Fowler, Andy Hunt
    posted to ruby by ujh on 2005-05-15 12:33:49 as read along with 8 people pdlug stagediver elliotb reisender 1101 pool007 jonathlela DaveWebster
  • Python Programming Patterns
    (23 October 2001)
    by Thomas W Christopher
    posted to python by ujh on 2005-05-15 12:31:50 as read along with 1 person reisender
  • Programming Perl (3rd Edition)
    (01 July 2000)
    by Larry Wall, Tom Christiansen, Jon Orwant
    posted to perl by ujh on 2005-05-15 12:31:06 as read along with 1 person and 1 group cmm FAB-lab
  • The Ruby Way
    (17 December 2001)
    by Hal Fulton
    posted to ruby by ujh on 2005-05-15 12:30:12 as read along with 3 people reisender pool007 neuralwarp
  • Algorithm Design: Foundations, Analysis, and Internet Examples
    (15 September 2001)
    by Michael T Goodrich, Roberto Tamassia, Michael Goodrich
    posted to algorithm cs design by ujh on 2005-05-09 17:36:16 as ***
  • Inferring cellular networks using probabilistic graphical models.
    Science, Vol. 303, No. 5659. (6 February 2004), pp. 799-805.
    by N Friedman
    posted to cellular networks by ujh on 2005-05-04 17:50:55 as **** along with 14 people and 1 group srp33 ldfu lfriedl opheliav ryang wnpx nirfriedman neveaire koller helsley dimatura edwardmorrissey vietanh0 Yumyai kdl
  • Detection of functional modules from protein interaction networks.
    Proteins, Vol. 54, No. 1. (1 January 2004), pp. 49-57.
    by JB Pereira-Leal, AJ Enright, CA Ouzounis
    posted to functional modules by ujh on 2005-05-04 17:49:55 as **** along with 2 people opheliav wnpx
  • Protein complexes and functional modules in molecular networks.
    Proc Natl Acad Sci U S A, Vol. 100, No. 21. (14 October 2003), pp. 12123-12128.
    by V Spirin, LA Mirny
    posted to functional modules by ujh on 2005-05-04 17:49:28 as read along with 11 people and 4 groups ellakat carlk biehl grahamc camster kentsis tmmurali dragonrez karfunkel joseph_x_zhou Evangelia dbk-lab biophysics HIV_DR bioNetwork_sysBio
  • Genome evolution reveals biochemical networks and functional modules.
    Proc Natl Acad Sci U S A, Vol. 100, No. 26. (23 December 2003), pp. 15428-15433.
    by C von Mering, EM Zdobnov, S Tsoka, FD Ciccarelli, JB Pereira-Leal, CA Ouzounis, P Bork
    posted to functional modules by ujh on 2005-04-25 13:13:14 as read along with 1 person and 2 groups lfriedl kdl Bioinformatics
  • The identification of functional modules from the genomic association of genes.
    Proc Natl Acad Sci U S A, Vol. 99, No. 9. (30 April 2002), pp. 5890-5895.
    by B Snel, P Bork, MA Huynen
    posted to functional modules by ujh on 2005-04-25 13:12:34 as read along with 3 people renatomilani ichbins81 karfunkel
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