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tny's network [36 articles]

当前文献位于 tny's 文献库 标签分类为 network. You can also see everyone's network.
  • Hierarchical structure and the prediction of missing links in networks
    Nature, Vol. 453, No. 7191., pp. 98-101.
    by Aaron Clauset, Cristopher Moore, MEJ Newman
    posted to network hierarchy by tny on 2008-05-02 08:09:11 as ** along with 35 people sen_cheng jjray rds Borelli ptrobajo apwesolowski dpf cmmorel fbaroni balicea cmor kengg pbull jago Ema gtgt15 hryk nedwards i-stevenson pinney elsantosneto markusd eyliu craigwilson06 jyuh margaritis gagliol bryanhughes akshat tmmurali cactus AbnerCYH briordan deanmalmgren soramame_0518
  • Relating three-dimensional structures to protein networks provides evolutionary insights.
    Science, Vol. 314, No. 5807. (22 December 2006), pp. 1938-1941.
    by PM Kim, LJ Lu, Y Xia, MB Gerstein
    posted to network structure by tny on 2008-02-15 03:11:29 as ** along with 17 people and 2 groups carlk saket paolomarcatili bicko lfriedl chad_davis Einat choonpeng timflutre grahamc ramensky massivemayhem efge lpfernandes cdeane Pao-Yang phoenixzxl structural_bioinformatics kdl
  • The Identification of Similarities between Biological Networks: Application to the Metabolome and Interactome
    Journal of Molecular Biology, Vol. 369, No. 4. (15 June 2007), pp. 1126-1139.
    by Adrian P Cootes, Stephen H Muggleton, Michael J Sternberg
    posted to interactome metabolome network by tny on 2007-05-22 09:55:10 as **
  • Network analysis of metabolic enzyme evolution in Escherichia coli.
    BMC Bioinformatics, Vol. 5 (18 February 2004)
    by S Light, P Kraulis
    posted to enzyme evolution network by tny on 2006-06-10 08:52:02 as ** along with 6 people and 1 group kuhn alexg eweaver azuma livingthingdan pekrau livingthing
  • Iterative Cluster Analysis of Protein Interaction Data
    Bioinformatics, Vol. 21, No. 3. (01 February 2005), 364.
    by Vicente Arnau, Sergio Mars, Ignacio Marin
    posted to domain_combination domain_graph network by tny on 2006-06-10 08:32:24 as ** along with 2 people AbnerCYH mdimmic
  • Domain Graph of Arabidopsis Proteome by Comparative Analysis
    J. Proteome Res (2005)
    by Liu
    posted to domain_combination domain_graph network by tny on 2006-06-10 08:31:01 as **
  • Evolutionary Dynamics of Prokaryotic Transcriptional Regulatory Networks
    Journal of Molecular Biology, Vol. 358, No. 2. (28 April 2006), pp. 614-633.
    by Madan, Sarah A Teichmann, L Aravind
    posted to network trscrp_reg by tny on 2006-06-06 10:34:05 as ** along with 4 people Retchless tvdbulck timflutre cjeans
  • A metabolic network in the evolutionary context: Multiscale structure and modularity.
    Proc Natl Acad Sci U S A (26 May 2006)
    by Victor Spirin, Mikhail S S Gelfand, Andrey A A Mironov, Leonid A A Mirny
    posted to evolutional_context multi_scale network by tny on 2006-06-06 10:31:59 as ** along with 3 people and 1 group cmm koller fishtank FAB-lab
  • The metabolic world of Escherichia coli is not small.
    Proc Natl Acad Sci U S A, Vol. 101, No. 6. (10 February 2004), pp. 1543-1547.
    by M Arita
    posted to metabolism network by tny on 2006-06-02 18:02:00 as ** along with 9 people and 3 groups hryk camster PeterCollins riomenajang barry alexg azuma dylan77 Ema dbk-lab structural_bioinformatics Bioinformatics
  • Influence of metabolic network structure and function on enzyme evolution.
    Genome Biol, Vol. 7, No. 5. (9 May 2006)
    by Dennis Vitkup, Peter Kharchenko, Andreas Wagner
    posted to enzyme evolution metabolism network by tny on 2006-05-31 15:49:42 as ** along with 2 people JeremyZucker mdstobbe
  • Evolution of Enzymes in Metabolism: A Network Perspective
    Journal of Molecular Biology, Vol. 320, No. 4. (19 July 2002), pp. 751-770.
    by Rui Alves, Raphael A Chaleil, Michael J Sternberg
    posted to enzyme evolution network by tny on 2006-05-31 15:35:34 as ** along with 1 person sim82
  • Oligomeric protein structure networks: insights into protein-protein interactions.
    BMC Bioinformatics, Vol. 6 (2005)
    by KV Brinda, S Vishveshwara
    posted to network oligomer by tny on 2006-05-23 11:04:36 as ** along with 4 people higueruelo bicko choonpeng gisle
  • Interaction and domain networks of yeast.
    Proteomics, Vol. 2, No. 12. (December 2002), pp. 1715-1723.
    by S Wuchty
    posted to domain network by tny on 2006-05-23 10:56:39 as **
  • The Activity Reaction Core and Plasticity of Metabolic Networks.
    PLoS Comput Biol, Vol. 1, No. 7. (16 December 2005)
    by Eivind Almaas, Zoltán N N Oltvai, Albert-László L Barabási
    posted to comparative metabolism network reaction by tny on 2006-05-19 16:02:51 as ** along with 2 people kentsis koller
  • Functional stoichiometric analysis of metabolic networks.
    Bioinformatics, Vol. 21, No. 22. (15 November 2005), pp. 4176-4180.
    by R Urbanczik, C Wagner
    posted to metabolism network by tny on 2006-05-19 14:44:20 as **
  • Protein interaction networks of Saccharomyces cerevisiae, Caenorhabditis elegans and Drosophila melanogaster: large-scale organization and robustness.
    Proteomics, Vol. 6, No. 2. (January 2006), pp. 456-461.
    by D Li, J Li, S Ouyang, J Wang, S Wu, P Wan, Y Zhu, X Xu, F He
    posted to comparative interaction network protein by tny on 2006-05-19 14:43:49 as ** along with 2 people mmt koller
  • Combining bioinformatics resources for the structural modelling of eukaryotic metabolic networks.
    Genome Inform Ser Workshop Genome Inform, Vol. 16, No. 1. (2005), pp. 223-232.
    by C Gille, S Hoffmann, HG Holzhütter
    posted to mashup metabolism network by tny on 2006-05-19 14:43:00 as **
  • Architecture of basic building blocks in protein and domain structural interaction networks.
    Bioinformatics, Vol. 21, No. 8. (15 April 2005), pp. 1479-1486.
    by HS Moon, J Bhak, KH Lee, D Lee
    posted to domain_interaction network by tny on 2006-05-19 14:40:48 as **
  • Metabolic pathways variability and sequence/networks comparisons.
    BMC Bioinformatics, Vol. 7 (2006)
    by K Tun, PK Dhar, MC Palumbo, A Giuliani
    posted to alignment comparative metabolism network by tny on 2006-05-19 14:31:06 as **
  • Scale-Free Behavior in Protein Domain Networks
    Mol Biol Evol, Vol. 18, No. 9. (1 September 2001), pp. 1694-1702.
    by Stefan Wuchty
    posted to comparative domain_interaction metabolism network by tny on 2006-05-19 13:59:11 as ** along with 1 person mariopradeep
  • Evolutionary cores of domain co-occurrence networks.
    BMC Evol Biol, Vol. 5, No. 1. (2005)
    by S Wuchty, E Almaas
    posted to comparative domain_interaction metabolism network by tny on 2006-05-19 13:52:40 as ** along with 2 people neils stajich
  • Reconstruction of metabolic networks from genome data and analysis of their global structure for various organisms.
    Bioinformatics, Vol. 19, No. 2. (22 January 2003), pp. 270-277.
    by H Ma, AP Zeng
    posted to metabolism network by tny on 2006-05-19 13:46:52 as ** along with 3 people kuhn eweaver yoh
  • Comparative metabolic network analysis of two xylose fermenting recombinant Saccharomyces cerevisiae strains.
    Metab Eng, Vol. 7, No. 5-6. (v 2005), pp. 437-444.
    by T Grotkjaer, P Christakopoulos, J Nielsen, L Olsson
    posted to comparative metabolic network by tny on 2006-05-19 13:45:52 as **
  • A cross species comparison of metabolic network functions.
    Genome Inform Ser Workshop Genome Inform, Vol. 16, No. 1. (2005), pp. 203-213.
    by O Ebenhöh, T Handorf, R Heinrich
    posted to comparative metabolism network pathway by tny on 2006-05-19 13:45:05 as **
  • Observing local and global properties of metabolic pathways: "load points" and "choke points" in the metabolic networks.
    Bioinformatics (8 May 2006)
    by Syed Asad A Rahman, Dietmar Schomburg
    posted to metabolism network pathway by tny on 2006-05-19 13:44:43 as ** along with 6 people and 1 group kuhn AbnerCYH bluto Nadam jdiggans mdstobbe Algorithms
  • Exploring photosynthesis evolution by comparative analysis of metabolic networks between chloroplasts and photosynthetic bacteria.
    BMC Genomics, Vol. 7, No. 1. (30 April 2006)
    by Zhuo Wang, Xin-Guang G Zhu, Yazhu Chen, Yuanyuan Li, Jing Hou, Yixue Li, Lei Liu
    posted to metabolism network pathway by tny on 2006-05-19 13:44:21 as **
  • The Escherichia coli MG1655 in silico metabolic genotype: Its definition, characteristics, and capabilities
    PNAS, Vol. 97, No. 10. (9 May 2000), pp. 5528-5533.
    by JS Edwards, BO Palsson
    posted to bacteria metabolism network pathway by tny on 2006-04-10 08:35:32 as ** along with 1 person fishtank
  • NETWORK BIOLOGY: UNDERSTANDING THE CELL'S FUNCTIONAL ORGANIZATION
    Nat Rev Genet, Vol. 5, No. 2. (February 2004), pp. 101-113.
    by Albert-Laszlo Barabasi, Zoltan N Oltvai
    posted to network scale_free by tny on 2006-04-10 07:38:58 as ** along with 9 people and 1 group okarsligil bayesian mmt grahamc mirzazadeh lpfernandes karfunkel vietanh0 nolodie Bioinformatics
  • Metabolic pathways in the post-genome era.
    Trends Biochem Sci, Vol. 28, No. 5. (May 2003), pp. 250-258.
    by JA Papin, ND Price, SJ Wiback, DA Fell, BO Palsson
    posted to metabolism network pathway by tny on 2006-04-10 07:31:05 as ** along with 2 people and 1 group camster alexg dbk-lab
  • PLoS Biology: The Evolution of Connectivity in Metabolic Networks
    posted to metabolism network by tny on 2006-04-07 12:17:33 as ** along with 1 person bjorns
  • Structural comparison of metabolic networks in selected single cell organisms.
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by D Zhu, ZS Qin
    posted to comparative metabolism network by tny on 2006-04-07 12:06:42 as ** along with 2 people Borelli alexg
  • Functional cartography of complex metabolic networks
    Nature, Vol. 433, No. 7028. (24 February 2005), pp. 895-900.
    by Roger Guimera, LAN Luis
    posted to enzyme network by tny on 2006-04-07 12:02:55 as *** along with 14 people and 4 groups carlk camster dbk BioGeek Borelli lfriedl balajis alexg eweaver wnpx cjeans kdang RobMills Diego_Prada streptomyces dbk-lab kdl Bioinformatics
  • Comparative analysis of protein domain organization.
    Genome Res, Vol. 14, No. 3. (March 2004), pp. 343-353.
    by Y Ye, A Godzik
    posted to domain_combination domain_graph network by tny on 2006-02-08 15:20:30 as ** along with 1 person Schmidtc
  • Proteome survey reveals modularity of the yeast cell machinery : Nature
    Nature
    posted to interaction network yeast by tny on 2006-01-23 14:11:41 as ** along with 2 people and 2 groups lyongu marcius BioinfoCIPF SGU-CIPF
  • Inferring meaningful pathways in weighted metabolic networks.
    J Mol Biol, Vol. 356, No. 1. (10 February 2006), pp. 222-236.
    by D Croes, F Couche, SJ Wodak, J van Helden
    posted to network pathway small_world by tny on 2006-01-22 08:06:17 as ** along with 1 person Borelli
  • Adaptive evolution of bacterial metabolic networks by horizontal gene transfer
    Nature Genetics, Vol. 37, No. 12. (20 November 2005), pp. 1372-1375.
    by Csaba Pál, Balázs Papp, Martin J Lercher
    posted to bacteria hgt network protein by tny on 2005-12-13 10:22:14 as ** along with 3 people and 1 group michaelbarton icases knaseanka TNT
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