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srp33's pathway_analysis [29 articles]

当前文献位于 srp33's 文献库 标签分类为 pathway_analysis. You can also see everyone's pathway_analysis.
  • Why Do Hubs in the Yeast Protein Interaction Network Tend To Be Essential: Reexamining the Connection between the Network Topology and Essentiality.
    PLoS computational biology, Vol. 4, No. 8. (August 2008)
    by E Zotenko, J Mestre, DP O'Leary, TM Przytycka
    posted to pathway_analysis hub_genes by srp33 on 2008-09-04 22:50:09 as ** along with 5 people and 1 group maralena cabbagesofdoom shikin cerca tmmurali GeneGo
  • iPath: interactive exploration of biochemical pathways and networks.
    Trends in biochemical sciences, Vol. 33, No. 3. (March 2008), pp. 101-103.
    by I Letunic, T Yamada, M Kanehisa, P Bork
    posted to pathway_analysis visualization by srp33 on 2008-08-21 21:59:58 as ** along with 3 people dullhunk jyuh reyez
  • VisANT: an integrative framework for networks in systems biology
    Brief Bioinform (7 May 2008), bbn020.
    by Zhenjun Hu, Evan S Snitkin, Charles Delisi
    posted to pathway_analysis visualization by srp33 on 2008-08-05 15:19:15 as ** along with 5 people and 1 group sameetmehta bootsy maralena jyuh maoxizeng Bioinformatics
  • cPath: open source software for collecting, storing, and querying biological pathways
    BMC Bioinformatics, Vol. 7 (13 November 2006), 497.
    by Ethan G Cerami, Gary D Bader, Benjamin Gross, Chris Sander
    posted to pathway_analysis by srp33 on 2008-08-05 00:01:29 as ** along with 6 people and 2 groups jfr dquest carmaus bootsy cerami AlexanderPico dIEMoSIRIS MoSi-Rostock
  • Integrating high-throughput and computational data elucidates bacterial networks.
    Nature, Vol. 429, No. 6987. (6 May 2004), pp. 92-96.
    by MW Covert, EM Knight, JL Reed, MJ Herrgard, BO Palsson
    posted to data_aggregation pathway_analysis visualization by srp33 on 2008-08-01 18:23:51 as ** along with 6 people and 2 groups Retchless lfriedl RMGraze alexg raiyar JeremyZucker kdl steinmetzlab
  • Disease gene explorer: display disease gene dependency by combining Bayesian networks with clustering
    Computational Systems Bioinformatics Conference, 2004. CSB 2004. Proceedings. 2004 IEEE (2004), pp. 574-575.
    by Qian Diao, We Hu, Hao Zhong, Juntao Li, Feng Xue, Tao Wang, Yimin Zhang
    posted to bayesian_networks clustering pathway_analysis by srp33 on 2008-08-01 00:18:38 as **
  • Probabilistic discovery of overlapping cellular processes and their regulation.
    J Comput Biol, Vol. 12, No. 7. (September 2005), pp. 909-927.
    by A Battle, E Segal, D Koller
    posted to gene_sets microarray pathway_analysis by srp33 on 2008-07-31 22:59:20 as ** along with 2 people nirfriedman roys
  • Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks.
    BMC Bioinformatics, Vol. 6 (2005)
    by CJ Wolfe, IS Kohane, AJ Butte
    posted to microarray pathway_analysis by srp33 on 2008-07-28 17:49:24 as ** along with 3 people balajis maryee dragonrez
  • A Module Map Showing Conditional Activity of Expression Modules in Cancer
    by E Segal, N Friedman, D Koller, A Regev
    posted to data_aggregation gene_sets network_reconstruction pathway_analysis by srp33 on 2008-07-15 17:32:48 as **
  • A map of human cancer signaling
    Mol Syst Biol, Vol. 3 (18 December 2007)
    by Qinghua Cui, Yun Ma, Maria Jaramillo, Hamza Bari, Arif Awan, Song Yang, Simo Zhang, Lixue Liu, Meng Lu, Maureen O'Connor-Mccourt, Enrico O Purisima, Edwin Wang
    posted to network_reconstruction pathway_analysis by srp33 on 2008-07-01 15:31:58 as ** along with 7 people jfr tmmurali ealloza cjeans Ema renatomilani frohike
  • Selective integration of multiple biological data for supervised network inference
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2488-2495.
    by Tsuyoshi Kato, Koji Tsuda, Kiyoshi Asai
    posted to data_aggregation pathway_analysis by srp33 on 2008-05-30 20:39:39 as **
  • Identification of Key Processes Underlying Cancer Phenotypes Using Biologic Pathway Analysis
    posted to data_aggregation pathway_analysis by srp33 on 2008-05-28 17:47:58 as **
  • BNArray: an R package for constructing gene regulatory networks from microarray data by using Bayesian network
    Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2952-2954.
    by Chen, Xiaohui, Chen, Ming, Ning, Kaida
    posted to bayesian_networks microarray pathway_analysis by srp33 on 2008-05-22 15:51:27 as ** along with 1 person jhatrimatri
  • Molecular concepts analysis links tumors, pathways, mechanisms, and drugs.
    Neoplasia, Vol. 9, No. 5. (May 2007), pp. 443-454.
    by DR Rhodes, S Kalyana-Sundaram, SA Tomlins, V Mahavisno, N Kasper, R Varambally, TR Barrette, D Ghosh, S Varambally, AM Chinnaiyan
    posted to gene_sets pathway_analysis by srp33 on 2008-05-21 19:54:13 as ** along with 2 people jfr waghsk
  • From patterns to pathways: gene expression data analysis comes of age.
    Nat Genet, Vol. 32 Suppl (December 2002), pp. 502-508.
    by DK Slonim
    posted to microarray pathway_analysis by srp33 on 2008-05-17 16:08:33 as ** along with 4 people textoris incovoma roys klo
  • Using process diagrams for the graphical representation of biological networks
    Nature Biotechnology, Vol. 23, No. 8. (04 August 2005), pp. 961-966.
    by Hiroaki Kitano, Akira Funahashi, Yukiko Matsuoka, Kanae Oda
    posted to graphical_models pathway_analysis by srp33 on 2008-05-17 16:06:34 as ** along with 6 people dullhunk massivemayhem maralena pmendes csanford lenov
  • Blazing Pathways Through Genetic Mountains
    Science, Vol. 293, No. 5537. (14 September 2001), pp. 2049-2051.
    by David K Gifford
    posted to graphical_models pathway_analysis by srp33 on 2008-05-17 16:04:52 as **
  • Reconstructing pathways in large genetic networks from genetic perturbations.
    J Comput Biol, Vol. 11, No. 1. (2004), pp. 53-60.
    by A Wagner
    posted to network_reconstruction pathway_analysis by srp33 on 2008-05-15 21:31:40 as ** along with 2 people and 1 group greg cantupaz spliceml
  • Molecular Analysis of Glioblastoma: Pathway Profiling and Its Implications for Patient Therapy
    Cancer Biology and Therapy, Vol. 2, No. 3. (2003), pp. 242-247.
    by Paul S Mischel, Stanley F Nelson, Timothy F Cloughesy
    posted to brain_cancer pathway_analysis translational_research by srp33 on 2008-05-15 16:44:03 as **
  • From signatures to models: understanding cancer using microarrays.
    Nat Genet, Vol. 37 Suppl (June 2005)
    by E Segal, N Friedman, N Kaminski, A Regev, D Koller
    posted to meta-analysis microarray pathway_analysis by srp33 on 2008-05-14 21:02:36 as ** along with 8 people and 1 group aalibes textoris troels_marstrand wnpx nirfriedman rdiaz sampath shikin GeneGo
  • Integrating biomedical knowledge to model pathways of prostate cancer progression.
    Cell cycle (Georgetown, Tex.), Vol. 6, No. 10. (May 2007), pp. 1177-1187.
    by DS Morris, SA Tomlins, DR Rhodes, R Mehra, RB Shah, AM Chinnaiyan
    posted to drug_discovery pathway_analysis by srp33 on 2008-05-14 20:59:48 as **
  • Integrative analysis of the cancer transcriptome.
    Nat Genet, Vol. 37 Suppl (June 2005)
    by DR Rhodes, AM Chinnaiyan
    posted to meta-analysis pathway_analysis by srp33 on 2008-05-14 20:43:01 as ** along with 5 people and 2 groups aalibes textoris ealloza shikin waghsk BioinfoCIPF GeneGo
  • Large-scale meta-analysis of cancer microarray data identifies common transcriptional profiles of neoplastic transformation and progression
    PNAS, Vol. 101, No. 25. (22 June 2004), pp. 9309-9314.
    by Daniel R Rhodes, Jianjun Yu, K Shanker, Nandan Deshpande, Radhika Varambally, Debashis Ghosh, Terrence Barrette, Akhilesh Pandey, Arul M Chinnaiyan
    posted to meta-analysis microarray pathway_analysis by srp33 on 2008-05-14 20:37:35 as ** along with 2 people and 1 group hawkeyehammer ugengma Indigene
  • Meta-Analysis of Microarrays: Interstudy Validation of Gene Expression Profiles Reveals Pathway Dysregulation in Prostate Cancer
    Cancer Res, Vol. 62, No. 15. (1 August 2002), pp. 4427-4433.
    by Daniel R Rhodes, Terrence R Barrette, Mark A Rubin, Debashis Ghosh, Arul M Chinnaiyan
    posted to meta-analysis microarray pathway_analysis by srp33 on 2008-05-14 20:34:37 as ** along with 4 people and 1 group hawkeyehammer ugengma waghsk kengg Indigene
  • From the Cover: Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    PNAS, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550.
    by Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander, Jill P Mesirov
    posted to gene_sets microarray pathway_analysis by srp33 on 2008-05-14 04:29:25 as ** along with 22 people and 4 groups dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet heliopais shikin waghsk roys ellakat ihpark sgoetz AbnerCYH Bioinformatics BioinfoCIPF GeschwindLab Indigene
  • Linking oncogenic pathways with therapeutic opportunities
    Nature Reviews Cancer, Vol. 6, No. 9. (17 August 2006), pp. 735-741.
    by Andrea H Bild, Anil Potti, Joseph R Nevins
    posted to microarray pathway_analysis by srp33 on 2008-05-14 04:25:32 as ** along with 4 people aviad_work jackjackjjj frohike jfr
  • Oncogenic pathway signatures in human cancers as a guide to targeted therapies
    Nature (06 November 2005)
    by Andrea H Bild, Guang Yao, Jeffrey T Chang, Quanli Wang, Anil Potti, Dawn Chasse, Mary-Beth Joshi, David Harpole, Johnathan M Lancaster, Andrew Berchuck, John A Olson, Jeffrey R Marks, Holly K Dressman, Mike West, Joseph R Nevins
    posted to microarray pathway_analysis by srp33 on 2008-05-14 04:24:32 as ** along with 11 people Yanno jyuh kentsis mfenner ajeffs tuck maryee eckart_bindewald frohike Ao_Li2007 waghsk
  • Discovering statistically significant pathways in expression profiling studies.
    Proc Natl Acad Sci U S A, Vol. 102, No. 38. (20 September 2005), pp. 13544-13549.
    by L Tian, SA Greenberg, SW Kong, J Altschuler, IS Kohane, PJ Park
    posted to gene_sets microarray pathway_analysis by srp33 on 2008-04-28 15:19:41 as ** along with 7 people and 1 group dragonrez maryee ealloza frohike justescaped giovenko heliopais BioinfoCIPF
  • Testing association of a pathway with survival using gene expression data
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1950-1957.
    by Jelle J Goeman, Jan Oosting, Anne-Marie Cleton-Jansen, Jakob K Anninga, Hans C van Houwelingen
    posted to gene_sets microarray pathway_analysis by srp33 on 2008-04-24 22:34:57 as **
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