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sobolevnrm's Wong [38 articles]

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  • notes Polymorphism of DNAâanionic liposome complexes reveals hierarchy of ion-mediated interactions
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 32. (2005)
    by H Liang, D Harries, GCL Wong
    posted to beyondmeanfield biomembranes electrostatics nucleicacids statisticalmechanics by sobolevnrm on 2008-08-29 13:42:03 as **
  • notes Counterions between charged polymers exhibit liquid-like organization and dynamics
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 21. (2006)
    by TE Angelini, R Golestanian, RH Cordan, JC Butler, A Beraud, M Krisch, H Sinn, KS Schweizer, GCL Wong
    posted to beyondmeanfield electrostatics statisticalmechanics by sobolevnrm on 2008-08-29 13:42:03 as **
  • notes Structure and dynamics of condensed multivalent ions within polyelectrolyte bundles: a combined x-ray diffraction and solid-state NMR study
    Journal of Physics: Condensed Matter, Vol. 17, No. 14. (2005)
    by TE Angelini, LK Sanders, H Liang, W Wriggers, JX Tang, GCL Wong
    posted to beyondmeanfield electrostatics statisticalmechanics by sobolevnrm on 2008-08-29 13:42:02 as **
  • Variable atomic radii for continuum-solvent electrostatics calculation
    The Journal of Chemical Physics, Vol. 129, No. 1. (2008)
    by Baojing Zhou, Manish Agarwal, Chung F Wong
    posted to electrostatics solvation by sobolevnrm on 2008-07-07 11:52:15 as read along with 1 group baker-group
  • Synthetic Antimicrobial Oligomers Induce a Composition-Dependent Topological Transition in Membranes
    J. Am. Chem. Soc., Vol. 129, No. 40. (10 October 2007), pp. 12141-12147.
    by L Yang, VD Gordon, A Mishra, A Som, KR Purdy, MA Davis, GN Tew, GCL Wong
    posted to biomembranes protein-membrane_interactions by sobolevnrm on 2008-06-13 13:18:10 as read along with 1 person and 1 group samjlord baker-group
  • Kinetic Control of Mg2+-dependent Melting of Duplex DNA Ends by Escherichia coli RecBC
    Journal of Molecular Biology, Vol. 378, No. 4. (9 May 2008), pp. 759-775.
    by Jason C Wong, Timothy M Lohman
    posted to helicase by sobolevnrm on 2008-04-18 11:38:51 as read along with 1 group baker-group
  • Flexible ligand-flexible protein docking in protein kinase systems
    Biochimica et Biophysica Acta (BBA) - Proteins & Proteomics, Vol. 1784, No. 1. (January 2008), pp. 244-251.
    by Chung F Wong
    posted to molecular_simulation protein-ligand_interactions drugdesign by sobolevnrm on 2008-01-18 16:34:38 as read along with 1 group baker-group
  • A Mining Minima Approach to Exploring the Docking Pathways of p-Nitrocatechol Sulfate to YopH
    Biophys. J., Vol. 93, No. 12. (15 December 2007), pp. 4141-4150.
    by Zunnan Huang, Chung F Wong
    posted to protein-ligand_interactions by sobolevnrm on 2007-12-27 12:21:11 as read along with 1 group baker-group
  • Control of electrostatic interactions between F-actin and genetically modified lysozyme in aqueous media
    Proceedings of the National Academy of Sciences, Vol. 104, No. 41. (9 October 2007), pp. 15994-15999.
    by Lori K Sanders, Wujing Xian, Camilo Guaqueta, Michael J Strohman, Chuck R Vrasich, Erik Luijten, Gerard C Wong
    posted to electrostatics experimental_methodology by sobolevnrm on 2007-10-25 15:28:53 as ** along with 1 group baker-group
  • Approximate Analytical Expressions for the Electrical Potential in a Cavity Containing Salt-Free Medium
    Langmuir (14 September 2007)
    by S Tseng, NB Wong, PC Liu, JP Hsu
    posted to electrostatics mathematics by sobolevnrm on 2007-09-24 12:53:35 as read along with 1 group baker-group
  • Rank-ordering protein-ligand binding affinity by a quantum mechanics/molecular mechanics/Poisson-Boltzmann-surface area model
    Journal of Chemical Physics, Vol. 126 (2007)
    by M Wang, CF Wong
    posted to electrostatics protein-ligand_interactions quantum_mechanics by sobolevnrm on 2007-05-25 14:36:04 as read along with 1 group baker-group
  • Probing 3'-ssDNA loop formation in E. coli RecBCD/RecBC-DNA complexes using non-natural DNA: a model for "Chi" recognition complexes
    Journal of Molecular Biology, Vol. 362, No. 1. (2006), pp. 26-43.
    by CJ Wong, RL Rice, T Ju, TM Lohman
    posted to nucleic_acids protein-nucleic_acid_interactions by sobolevnrm on 2007-05-25 14:23:17 as read along with 1 group baker-group
  • Probing the Active Center Gorge of Acetylcholinesterase by Fluorophores Linked to Substituted Cysteines
    Journal of Biological Chemistry, Vol. 275, No. 29. (2000), pp. 22401-8.
    by AE Boyd, AB Marnett, L Wong, P Taylor
    posted to acetylcholinesterase by sobolevnrm on 2007-05-25 14:23:17 as read along with 1 group baker-group
  • Counterions between charged polymers exhibit liquid-like organization and dynamics
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 103, No. 21. (2006), pp. 7962-7.
    by TE Angelini, R Golestanian, RH Cordan, JC Butler, A Beraud, M Krisch, H Sinn, KS Schweizer, GCL Wong
    posted to electrostatics statistical_mechanics by sobolevnrm on 2007-05-25 14:22:46 as read along with 1 group baker-group
  • Conversion of Trypsin into a Na+-Activated Enzyme
    Biochemistry, Vol. 45, No. 9. (2006), pp. 2987-93.
    by MJ Page, MR Bleackley, S Wong, RTA Macgillivray, E di Cera
    posted to thrombin by sobolevnrm on 2007-05-25 14:19:55 as read along with 1 group baker-group
  • Biological physics: Rare returns on lost effort
    Nature, Vol. 437, No. 7056. (2005), pp. 198-9.
    by WP Wong, E Evans
    posted to statistical_mechanics by sobolevnrm on 2007-05-25 14:18:43 as read along with 1 group baker-group
  • Energetics of DNA End Binding by E. coli RecBC and RecBCD Helicases Indicate Loop Formation in the 3â²-Single-stranded DNA Tail
    Journal of Molecular Biology, Vol. 352, No. 4. (2005), pp. 765-82.
    by CJ Wong, AL Lucius, TM Lohman
    posted to protein-nucleic_acid_interactions by sobolevnrm on 2007-05-25 14:18:25 as read along with 1 group baker-group
  • Polymorphism of DNAâanionic liposome complexes reveals hierarchy of ion-mediated interactions
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 32. (2005), pp. 11173-8.
    by H Liang, D Harries, GCL Wong
    posted to biomembranes electrostatics nucleic_acids statistical_mechanics by sobolevnrm on 2007-05-25 14:18:25 as read along with 1 group baker-group
  • The use of oscillatory signals in the study of genetic networks
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 102, No. 20. (2005), pp. 7063-8.
    by O Lipan, WH Wong
    posted to statistical_mechanics systems_biology by sobolevnrm on 2007-05-25 14:17:41 as read along with 1 group baker-group
  • Structure and dynamics of condensed multivalent ions within polyelectrolyte bundles: a combined x-ray diffraction and solid-state NMR study
    Journal of Physics: Condensed Matter, Vol. 17, No. 14. (2005), pp. S1123-S1135.
    by TE Angelini, LK Sanders, H Liang, W Wriggers, JX Tang, GCL Wong
    posted to electrostatics statistical_mechanics by sobolevnrm on 2007-05-25 14:16:05 as read along with 1 group baker-group
  • Relative contributions of desolvation, inter- and intramolecular interactions to binding affinity in protein kinase systems
    Journal of Computational Chemistry, Vol. 26, No. 7. (2005), pp. 668-81.
    by PA Sims, CF Wong, D Vuga, JA Mccammon, BM Sefton
    posted to electrostatics protein-ligand_interactions by sobolevnrm on 2007-05-25 14:15:43 as read along with 1 group baker-group
  • Ask the experts: how to get hired
    Nature Biotechnology, Vol. 22, No. 11. (2004), pp. 1481-2.
    by GHW Wong
    posted to misc by sobolevnrm on 2007-05-25 14:13:42 as read along with 1 group baker-group
  • Finite concentration effects on diffusion-controlled reactions
    Journal of Chemical Physics, Vol. 121, No. 16. (2004), pp. 7896-900.
    by S Senapati, CF Wong, JA Mccammon
    posted to diffusion by sobolevnrm on 2007-05-25 14:13:41 as read along with 1 group baker-group
  • Protein simulation and drug design
    Advances in Protein Chemistry, Vol. 66 (2003), pp. 87-121.
    by CF Wong, JA Mccammon
    posted to molecular_simulation by sobolevnrm on 2007-05-25 14:13:09 as read along with 1 group baker-group
  • Analysis of Electrostatics and Correlated Motions for Hydride Transfer in Dihydrofolate Reductase
    Journal of Physical Chemistry B, Vol. 108, No. 32. (2004), pp. 12231-41.
    by KF Wong, JB Watney, Hammes S Schiffer
    posted to electrostatics molecular_dynamics quasiharmonic-models_elastic-network_gnm_nma_pca_etc by sobolevnrm on 2007-05-25 14:12:47 as read along with 1 group baker-group
  • Charge optimization of the interface between protein kinases and their ligands
    Journal of Computational and Applied Mathematics, Vol. 25, No. 11. (2004), pp. 1416-29.
    by PA Sims, CF Wong, JA Mccammon
    posted to electrostatics by sobolevnrm on 2007-05-25 14:10:09 as read along with 1 group baker-group
  • Fluorescence Stopped-flow Studies of Single Turnover Kinetics of E. coli RecBCD Helicase-catalyzed DNA Unwinding
    Journal of Molecular Biology, Vol. 339, No. 4. (2004), pp. 731-50.
    by AL Lucius, CJ Wong, TM Lohman
    posted to protein-nucleic_acid_interactions by sobolevnrm on 2007-05-25 14:09:50 as read along with 1 group baker-group
  • Communication Pathways between the Nucleotide Pocket and Distal Regulatory Sites in Protein Kinases
    Accounts of Chemical Research, Vol. 37, No. 5. (2004), pp. 304-11.
    by L Wong, PA Jennings, JA Adams
    posted to allostery by sobolevnrm on 2007-05-25 14:09:31 as read along with 1 group baker-group
  • Nanosecond dynamics of acetylcholinesterase near the active-center gorge
    Journal of Biological Chemistry (2004)
    by AE Boyd, CS Dunlop, L Wong, Z Radic, P Taylor, DA Johnson
    posted to acetylcholinesterase by sobolevnrm on 2007-05-25 14:06:14 as read along with 1 group baker-group
  • Ion Multivalence and Like-Charge Polyelectrolyte Attraction
    Physical Review Letters, Vol. 91 (2003)
    by JC Butler, T Angelini, JX Tang, GCL Wong
    posted to electrostatics by sobolevnrm on 2007-05-25 14:04:12 as read along with 1 group baker-group
  • Computational analysis of PKA-balanol interactions
    J Med Chem, Vol. 44, No. 10. (2001), pp. 1530-9.
    by CF Wong, PH Hunenberger, P Akamine, N Narayana, T Diller, JA Mccammon, S Taylor, NH Xuong
    posted to electrostatics misc biologicalsystems by sobolevnrm on 2007-05-25 13:55:43 as read along with 1 group baker-group
  • Like-charge attraction between polyelectrolytes induced by counterion charge density waves
    Proceedings of the National Academy of Sciences of the United States of America, Vol. 100, No. 15. (2003), pp. 8634-8637.
    by TE Angelini, H Liang, W Wriggers, GCL Wong
    posted to electrostatics biologicalsystems by sobolevnrm on 2007-05-25 13:55:43 as read along with 1 group baker-group
  • The effect of a variable dielectric coefficient and finite ion size on Poisson-Boltzmann calculations of DNA-electrolyte systems
    Biophys J, Vol. 65, No. 4. (1993), pp. 1363-70.
    by GR Pack, GA Garrett, L Wong, G Lamm
    posted to electrostatics nucleic_acids by sobolevnrm on 2007-05-25 13:51:17 as read along with 1 group baker-group
  • Divalent cations and the electrostatic potential around DNA: Monte Carlo and Poisson-Boltzmann calculations
    Biopolymers, Vol. 49, No. 7. (1999), pp. 575-90.
    by GR Pack, L Wong, G Lamm
    posted to electrostatics nucleic_acids by sobolevnrm on 2007-05-25 13:51:17 as read along with 1 group baker-group
  • Monte Carlo and Poisson-Boltzmann calculations of the fraction of counterions bound to DNA
    Biopolymers, Vol. 34, No. 2. (1994), pp. 227-37.
    by G Lamm, L Wong, GR Pack
    posted to electrostatics nucleic_acids by sobolevnrm on 2007-05-25 13:51:17 as read along with 1 group baker-group
  • Implementing a collaboratory for microscopic digital anatomy
    Intl. J. Supercomputing Applic. and High Performance Computing, Vol. 10 (1996), pp. 170-181.
    by SJ Young, GY Fan, D Hessler, S Lamont, TT Elvins, M Hadida, G Hanyzewski, JW Durkin, P Hubbard, D Kindalman, E Wong, D Greenberg, S Karin, MH Ellisman
    posted to experimental_methodology by sobolevnrm on 2007-05-25 13:39:31 as read along with 1 group baker-group
  • Superoxide Dismutase - Fluctuations in the Structure and Solvation of the Active Site Channel Studied by Molecular Dynamics Simulation
    Biopolymers, Vol. 28, No. 12. (1989), pp. 2085-2096.
    by J Shen, S Subramaniam, CF Wong, JA Mccammon
    posted to electrostatics molecular_simulation by sobolevnrm on 2007-05-25 13:37:42 as read along with 1 group baker-group
  • Atomistic Brownian dynamics simulation of peptide phosphorylation
    Journal of the American Chemical Society, Vol. 123, No. 37. (2001), pp. 9107-9111.
    by TY Shen, CF Wong, JA Mccammon
    posted to electrostatics molecular_simulation by sobolevnrm on 2007-05-25 13:37:41 as read along with 1 group baker-group
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