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schuylrp's library [47 articles]

最近录入 schuylrp's 文献库:按阅读优先等级排序.
  • Gene Set Enrichment Analysis (GSEA) for Interpreting Gene Expression Profiles
    Current Bioinformatics, Vol. 2, No. 2. (May 2007), pp. 133-137.
    by Shi, Jing, Walker, G Michael
    posted to enrichment expression gene gsea microarray by schuylrp on 2007-08-10 18:34:32 as ** along with 2 people giovenko kengg
  • Next station in microarray data analysis: GEPAS.
    Nucleic Acids Res, Vol. 34, No. Web Server issue. (1 July 2006)
    by D Montaner, J Tárraga, J Huerta-Cepas, J Burguet, JM Vaquerizas, L Conde, P Minguez, J Vera, S Mukherjee, J Valls, MA Pujana, E Alloza, J Herrero, F Al-Shahrour, J Dopazo
    posted to expression gene microarray by schuylrp on 2007-08-10 15:36:43 as ** along with 5 people and 2 groups marcius tardigrade rdiaz ealloza sgoetz BioinfoCIPF SGU-CIPF
  • Statistical significance for genomewide studies.
    Proc Natl Acad Sci U S A, Vol. 100, No. 16. (5 August 2003), pp. 9440-9445.
    by JD Storey, R Tibshirani
    posted to comparison expression fdr gene microarray multiple by schuylrp on 2007-08-10 07:45:56 as ** along with 19 people and 1 group bpcusack sconlan zhouyu roys jyuh textoris RMGraze jen_drake hggr frohike grahamc incovoma kynn sancho 7ofAnn nicholso shikin wirawan BrianTomasik Bioinformatics
  • Computational strategies for analyzing data in gene expression microarray experiments.
    J Bioinform Comput Biol, Vol. 1, No. 3. (October 2003), pp. 541-586.
    by T Aittokallio, M Kurki, O Nevalainen, T Nikula, A West, R Lahesmaa
    posted to expression gene microarray by schuylrp on 2007-08-10 07:43:52 as **
  • Variance-stabilizing transformations for two-color microarrays.
    Bioinformatics, Vol. 20, No. 5. (22 March 2004), pp. 660-667.
    by BP Durbin, DM Rocke
    posted to expression gene microarray by schuylrp on 2007-08-10 07:42:39 as **
  • Empirical evaluation of data transformations and ranking statistics for microarray analysis.
    Nucleic Acids Res, Vol. 32, No. 18. (2004), pp. 5471-5479.
    by LX Qin, KF Kerr,
    posted to expression gene microarray by schuylrp on 2007-08-10 07:31:40 as ** along with 2 people daforerog dquest
  • From the Cover: Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    PNAS, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550.
    by Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander, Jill P Mesirov
    posted to expression gene gsea microarray by schuylrp on 2007-08-10 07:28:09 as ** along with 22 people and 4 groups AbnerCYH sgoetz ellakat ihpark srp33 dragonrez jfr balajis maryee xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer natstreet heliopais shikin waghsk roys Bioinformatics BioinfoCIPF GeschwindLab Indigene
  • GSEA-P: A desktop application for Gene Set Enrichment Analysis
    Bioinformatics (20 July 2007), btm369.
    by Aravind Subramanian, Heidi Kuehn, Joshua Gould, Pablo Tamayo, Jill P Mesirov
    posted to expression gene microarray by schuylrp on 2007-08-10 07:26:53 as ** along with 8 people and 1 group heliopais Eugene jyuh cassj ealloza barriot waszak dmontaner BioinfoCIPF
  • Rank products: a simple, yet powerful, new method to detect differentially regulated genes in replicated microarray experiments.
    FEBS Lett, Vol. 573, No. 1-3. (27 August 2004), pp. 83-92.
    by R Breitling, P Armengaud, A Amtmann, P Herzyk
    posted to expression gene microarray by schuylrp on 2007-08-10 07:24:28 as ** along with 3 people kengg bakakaj 0004573p
  • Normalization of cDNA microarray data using wavelet regressions.
    Comb Chem High Throughput Screen, Vol. 7, No. 8. (December 2004), pp. 783-791.
    by J Wang, JZ Ma, MD Li
    posted to microarray normalization wavelet by schuylrp on 2007-08-08 19:26:49 as **
  • Statistical concerns about the GSEA procedure.
    Nat Genet, Vol. 36, No. 7. (July 2004)
    by D Damian, M Gorfine
    posted to enrichment expression gene gsea microarray set by schuylrp on 2007-08-08 19:23:55 as ** along with 2 people and 1 group heliopais ealloza BioinfoCIPF
  • Resveratrol improves health and survival of mice on a high-calorie diet
    Nature
    by Joseph A Baur, Kevin J Pearson, Nathan L Price, Hamish A Jamieson, Carles Lerin, Avash Kalra, Vinayakumar V Prabhu, Joanne S Allard, Guillermo Lopez-Lluch, Kaitlyn Lewis, Paul J Pistell, Suresh Poosala, Kevin G Becker, Olivier Boss, Dana Gwinn, Mingyi Wang, Sharan Ramaswamy, Kenneth W Fishbein, Richard G Spencer, Edward G Lakatta, David Le Couteur, Reuben J Shaw, Placido Navas, Pere Puigserver, Donald K Ingram, Rafael de Cabo, David A Sinclair
    posted to caloric restriction resveratrol by schuylrp on 2007-08-07 18:01:49 as ** along with 6 people zhlei wilvc giovanni todda psique slevy03
  • Multiple comparisons: philosophies and illustrations.
    Am J Physiol Regul Integr Comp Physiol, Vol. 279, No. 1. (July 2000)
    by D Curran-Everett
    posted to comparison expression gene microarray multiple by schuylrp on 2007-08-03 21:31:09 as ** along with 2 people jyuh jdiggans
  • A variance-stabilizing transformation for gene-expression microarray data.
    Bioinformatics, Vol. 18 Suppl 1 (2002)
    by BP Durbin, JS Hardin, DM Hawkins, DM Rocke
    posted to expression gene microarray by schuylrp on 2007-08-03 21:28:54 as ** along with 2 people baldigroup j3xucite
  • Microarray data normalization and transformation.
    Nat Genet, Vol. 32 Suppl (December 2002), pp. 496-501.
    by J Quackenbush
    posted to expression gene microarray by schuylrp on 2007-08-03 21:24:39 as ** along with 6 people bertelsen frohike textoris alokm chad_davis heliopais
  • Microarray data analysis: from disarray to consolidation and consensus
    Nature Reviews Genetics, Vol. 7, No. 1., pp. 55-65.
    by David B Allison, Xiangqin Cui, Grier P Page, Mahyar Sabripour
    posted to expression gene microarray by schuylrp on 2007-08-03 21:23:13 as ** along with 22 people and 2 groups aviad_work jo_davies giovenko jyuh barry textoris jfr Ayest balicea sterovetta lhonigberg acidwizard ronaldozhou vpschulz rmk Garamonfok debasis GeeSharpMinor dimatura heliopais shikin minostro structural_bioinformatics Bioinformatics
  • GenTHREADER: an efficient and reliable protein fold recognition method for genomic sequences.
    J Mol Biol, Vol. 287, No. 4. (9 April 1999), pp. 797-815.
    by DT Jones
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:59:26 as ** along with 3 people janasont j3xucite dgront
  • From fold to function.
    Curr Opin Struct Biol, Vol. 10, No. 3. (June 2000), pp. 384-389.
    by J Moult, E Melamud
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:54:13 as **
  • Sequence comparison and protein structure prediction.
    Curr Opin Struct Biol, Vol. 16, No. 3. (June 2006), pp. 374-384.
    by RL Dunbrack
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:53:28 as ** along with 4 people jwm wouterboomsma xiaobeizhao rabio
  • Servers for protein structure prediction.
    Curr Opin Struct Biol (16 March 2006)
    by Daniel Fischer
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:51:59 as ** along with 6 people granujilla kuhn chad_davis wouterboomsma dgront Jporci
  • Comparative modeling for protein structure prediction.
    Curr Opin Struct Biol (27 February 2006)
    by Krzysztof Ginalski
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:51:09 as ** along with 6 people granujilla BragilMassoud kuhn rabio ruvido insectopalo
  • Detecting distant homology with Meta-BASIC.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by K Ginalski, M von Grotthuss, NV Grishin, L Rychlewski
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:50:23 as ** along with 1 person rabio
  • Predicting peptide binding to MHC pockets via molecular modeling, implicit solvation, and global optimization.
    Proteins, Vol. 54, No. 3. (15 February 2004), pp. 534-556.
    by HD Schafroth, CA Floudas
    posted to mhc by schuylrp on 2007-08-03 20:48:55 as **
  • Advances in protein structure prediction and de novo protein design: A review
    Chemical Engineering Science, Vol. 61, No. 3. (February 2006), pp. 966-988.
    by CA Floudas, HK Fung, SR Mcallister, M Monnigmann, R Rajgaria
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:48:37 as ** along with 2 people granujilla massivemayhem
  • 3D-Jury: a simple approach to improve protein structure predictions.
    Bioinformatics, Vol. 19, No. 8. (22 May 2003), pp. 1015-1018.
    by K Ginalski, A Elofsson, D Fischer, L Rychlewski
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:46:33 as ** along with 3 people karbak dgront mijam
  • Template-based modeling and free modeling by I-TASSER in CASP7.
    Proteins, No. in press.
    by Yang Zhang
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:45:55 as **
  • Computational methods in protein structure prediction.
    Biotechnol Bioeng, Vol. 97, No. 2. (1 June 2007), pp. 207-213.
    by CA Floudas
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:43:10 as **
  • Defrosting the frozen approximation: PROSPECTOR--a new approach to threading.
    Proteins, Vol. 42, No. 3. (15 February 2001), pp. 319-331.
    by J Skolnick, D Kihara
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:41:00 as ** along with 1 person dgront
  • SCOP: a structural classification of proteins database for the investigation of sequences and structures.
    J. Mol. Biol., Vol. 247 (1995), pp. 536-540.
    by AG Murzin, SE Brenner, T Hubbard, C Chothia
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:36:24 as **
  • Hybrid fold recognition: Combining sequence derived properties with evolutionary information
    (2000)
    by D Fischer
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:35:26 as **
  • Assessment of fold recognition predictions in CASP6.
    Proteins (26 September 2005)
    by Guoli Wang, Yumi Jin, Roland L L Dunbrack
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:31:43 as ** along with 3 people and 2 groups janasont nigham marcius BioinfoCIPF SGU-CIPF
  • Critical assessment of methods of protein structure prediction (CASP)--round 6.
    Proteins, Vol. 61 Suppl 7 (2005), pp. 3-7.
    by J Moult, K Fidelis, B Rost, T Hubbard, A Tramontano
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:31:20 as ** along with 4 people saunders j3xucite dgront aengisch
  • Comparative modeling in CASP6 using consensus approach to template selection, sequence-structure alignment, and structure assessment.
    Proteins, Vol. 61 Suppl 7 (2005), pp. 99-105.
    by C Venclovas, M Margelevicius
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:30:52 as ** along with 1 person nigham
  • Progress over the first decade of CASP experiments.
    Proteins (26 September 2005)
    by Andriy Kryshtafovych, Ceslovas Venclovas, Krzysztof Fidelis, John Moult
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:28:54 as ** along with 4 people and 2 groups granujilla bicko marcius ffranca BioinfoCIPF SGU-CIPF
  • Free modeling with Rosetta in CASP6.
    Proteins (26 September 2005)
    by Philip Bradley, Lars Malmström, Bin Qian, Jack Schonbrun, Dylan Chivian, David E E Kim, Jens Meiler, Kira M S M Misura, David Baker
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:28:13 as ** along with 4 people and 2 groups jwm marcius dgront mirzazadeh BioinfoCIPF SGU-CIPF
  • Prediction of CASP6 structures using automated Robetta protocols.
    Proteins, Vol. 61 Suppl 7 (2005), pp. 157-166.
    by D Chivian, DE Kim, L Malmström, J Schonbrun, CA Rohl, D Baker
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:27:35 as ** along with 1 person jwm
  • Fold recognition by concurrent use of solvent accessibility and residue depth.
    Proteins, Vol. 68, No. 3. (15 August 2007), pp. 636-645.
    by S Liu, C Zhang, S Liang, Y Zhou
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 20:25:48 as ** along with 1 person newton1234
  • TASSER: An automated method for the prediction of protein tertiary structures in CASP6.
    Proteins (26 September 2005)
    by Yang Zhang, Adrian K K Arakaki, Jeffrey Skolnick
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 03:56:58 as ** along with 4 people and 2 groups nigham marcius dgront mirzazadeh BioinfoCIPF SGU-CIPF
  • Development and large scale benchmark testing of the PROSPECTOR_3 threading algorithm.
    Proteins, Vol. 56, No. 3. (15 August 2004), pp. 502-518.
    by J Skolnick, D Kihara, Y Zhang
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 03:47:19 as ** along with 1 person j3xucite
  • notes The protein structure prediction problem could be solved using the current PDB library.
    Proc Natl Acad Sci U S A, Vol. 102, No. 4. (25 January 2005), pp. 1029-1034.
    by Y Zhang, J Skolnick
    posted to fold prediction protein recognition structure by schuylrp on 2007-08-03 03:46:04 as ** along with 9 people and 3 groups neils karbak iakes vavi marcius alexg j3xucite kracher jfmuggs BioinfoCIPF Immunoinformatics SGU-CIPF
  • Characterization of a bidirectional promoter shared between two human genes related to aging: SIRT3 and PSMD13.
    Genomics, Vol. 89, No. 1. (January 2007), pp. 143-150.
    by D Bellizzi, S Dato, P Cavalcante, G Covello, F Di Cianni, G Passarino, G Rose, G De Benedictis
    posted to aging sirt by schuylrp on 2006-12-14 16:43:23 as **
  • Can the common brain parasite, Toxoplasma gondii, influence human culture?
    Proc Biol Sci (1 August 2006)
    by Kevin D D Lafferty
    posted to brain culture gondii parasite toxoplasma by schuylrp on 2006-12-14 16:41:25 as ** along with 4 people qwermish Borelli pwozny chelsea-chelsea
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