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rsantana's library [932 articles]

最近录入 rsantana's 文献库:按阅读优先等级排序.
  • Embracing Statistical Challenges in the Information Technology Age
    Technometrics, Vol. 49, No. 3. (August 2007), pp. 237-248.
    by Yu, Bin
    posted to graphical-models learning by rsantana on 2008-03-14 16:56:28 as ***** along with 1 person davidr
  • Conformational analysis of the backbone-dependent rotamer preferences of protein sidechains.
    Nat Struct Biol, Vol. 1, No. 5. (May 1994), pp. 334-340.
    by RL Dunbrack, M Karplus
    posted to protein rotamers sidechains by rsantana on 2007-10-26 23:41:38 as ***** along with 3 people and 1 group jwm nknii kazemi TCR_Signaling
  • Belief-Propagation for Weighted b-Matchings on Arbitrary Graphs and its Relation to Linear Programs with Integer Solutions
    (8 Sep 2007)
    by Mohsen Bayati, Christian Borgs, Jennifer Chayes, Riccardo Zecchina
    posted to graphs inference optimization propagation by rsantana on 2007-09-14 21:57:47 as ***** along with 3 people euclid ansobol daniel51
  • Solving Constraint Satisfaction Problems through Belief Propagation-guided decimation
    (11 Sep 2007)
    by Andrea Montanari, Federico Ricci-Tersenghi, Guilhem Semerjian
    posted to constraints decimation inference optimization propagation by rsantana on 2007-09-14 21:55:01 as ***** along with 2 people and 6 groups A_Olympia euclid Philosophy_of_Information Blog_and_Wiki_Research Algorithms metric_embeddings TCS Polytopes
  • Machine Learning and Its Applications to Biology.
    PLoS Comput Biol, Vol. 3, No. 6. (29 June 2007)
    by Adi L L Tarca, Vincent J J Carey, Xue-Wen W Chen, Roberto Romero, Sorin Drăghici
    posted to bioinformatics by rsantana on 2007-09-03 21:58:21 as ***** along with 4 people and 1 group jfr chad_davis gsiwo groepl Bioinformatics
  • Dynamic Conditional Random Fields
    by For J Labeling
    posted to graphical-models inference markov-fields propagation by rsantana on 2007-08-30 12:08:14 as ***** along with 3 people g000nz0 qazsxdr yotarow
  • Genetic Particle Swarm Optimization Based on Estimation of Distribution
    Bio-Inspired Computational Intelligence and Applications (2007), pp. 287-296.
    by Jiahai Wang
    posted to edas optimization swarms by rsantana on 2007-08-29 16:32:37 as ***** along with 1 person and 3 groups nojhan EvolutionaryComputation Metaheuristics Optimization
  • The computational complexity of some classical problems from statistical physics
    (1990)
    by D Welsh
    posted to complexity optimization by rsantana on 2007-07-24 12:31:22 as ***** along with 3 people and 4 groups ansobol euclid gane5h Algorithms metric_embeddings TCS Polytopes
  • Sorting and Selection in Posets
    (10 Jul 2007)
    by Constantinos Daskalakis, Richard M Karp, Elchanan Mossel, Samantha Riesenfeld, Elad Verbin
    posted to factor-graphs graphical-models graphs kikuchi-approximations by rsantana on 2007-07-24 12:30:17 as ***** along with 3 people ansobol jrw pirapira
  • The mutual information: detecting and evaluating dependencies between variables.
    Bioinformatics, Vol. 18 Suppl 2 (2002)
    by R Steuer, J Kurths, CO Daub, J Weise, J Selbig
    posted to graph modularity network by rsantana on 2007-06-06 11:34:04 as ***** along with 6 people and 1 group ebalp BragilMassoud garyfeng anon_pl wongmld RobMills ReadingLab
  • Frustration and hydrophobicity interplay in protein folding and protein evolution.
    J Chem Phys, Vol. 125, No. 8. (28 August 2006)
    by LC Oliveira, RT Silva, VB Leite, J Chahine
    posted to frustration hp-model protein by rsantana on 2007-05-29 12:34:52 as ***** along with 2 people and 1 group kracher saunders Immunoinformatics
  • Exploring the origins of topological frustration: design of a minimally frustrated model of fragment B of protein A.
    Proc Natl Acad Sci U S A, Vol. 96, No. 22. (26 October 1999), pp. 12512-12517.
    by JE Shea, JN Onuchic, CL Brooks
    posted to bioinformatics frustration protein by rsantana on 2007-05-29 12:13:21 as ***** along with 1 person and 1 group Einat structural_bioinformatics
  • A framework for describing topological frustration in models of protein folding.
    J Mol Biol, Vol. 362, No. 3. (22 September 2006), pp. 605-621.
    by TS Norcross, TO Yeates
    posted to bioinformatics frustration protein by rsantana on 2007-05-29 12:04:01 as ***** along with 1 person choonpeng
  • Shaping up the protein folding funnel by local interaction: Lesson from a structure prediction study
    PNAS, Vol. 103, No. 9. (28 February 2006), pp. 3141-3146.
    by George Chikenji, Yoshimi Fujitsuka, Shoji Takada
    posted to bioinformatics hp-model protein by rsantana on 2007-05-28 10:29:08 as ***** along with 4 people eckart_bindewald wouterboomsma sotaro saunders
  • Simultaneous determination of protein structure and dynamics
    Nature, Vol. 433, No. 7022. (13 January 2005), pp. 128-132.
    by Kresten Lindorff-Larsen, Robert B Best, Mark A Depristo, Christopher M Dobson, Michele Vendruscolo
    posted to protein by rsantana on 2007-05-14 20:08:17 as ***** along with 12 people and 2 groups rph karbak apaydin barry lillekatt baaden lna dgront allmensch daevans jlh64 biehl structural_bioinformatics Bioinformatics
  • Side Chain-Positioning as an Integer Programming Problem
    (2001), pp. 128-141.
    by Olivia Eriksson, Yishao Zhou, Arne Elofsson
    posted to protein sidechains by rsantana on 2007-05-14 20:07:11 as ***** along with 1 person apaydin
  • Inferential Structure Determination
    Science, Vol. 309, No. 5732. (08 July 2005), pp. 303-306.
    by Wolfgang Rieping, Michael Habeck, Michael Nilges
    posted to bayesian inference protein by rsantana on 2007-05-14 20:04:15 as ***** along with 2 people apaydin dgront
  • The magnitude of the backbone conformational entropy change in protein folding.
    Proteins, Vol. 25, No. 2. (June 1996), pp. 143-156.
    by JA D'Aquino, J Gómez, VJ Hilser, KH Lee, LM Amzel, E Freire
    posted to bioinformatics entropy protein by rsantana on 2007-05-14 19:58:06 as ***** along with 1 person apaydin
  • On the Convergence of Kikuchi's Natural Iteration Method
    Journal of Statistical Physics, Vol. 119, No. 3-4. (May 2005), pp. 659-675.
    by Marco Pretti
    posted to entropy kikuchi-approximations propagation region-graphs by rsantana on 2007-05-14 08:55:10 as *****
  • Approximate inference and constrained optimization
    (2003)
    by T Heskes, K Albers, B Kappen
    posted to constraints inference optimization propagation by rsantana on 2007-04-26 18:13:13 as *****
  • A message-passing algorithm with damping
    Journal of Statistical Mechanics: Theory and Experiment, Vol. 2005, No. 11. (November 2005), P11008.
    by Marco Pretti
    posted to damping propagation by rsantana on 2007-04-26 18:09:33 as *****
  • Pair correlations in the cluster variation approximation
    Physica A: Statistical and Theoretical Physics, Vol. 111, No. 1-2. (March 1982), pp. 200-216.
    by JM Sanchez
    posted to entropy interactions kikuchi-approximations region-graphs by rsantana on 2007-04-26 17:59:10 as *****
  • Exact Solution of the Muñoz-Eaton Model for Protein Folding
    Physical Review Letters, Vol. 88, No. 25. (6 June 2002), 258101.
    by Pierpaolo Bruscolini, Alessandro Pelizzola
    posted to entropy kikuchi-approximations protein realizability region-graphs by rsantana on 2007-04-26 17:46:34 as *****
  • Correlation Functions by Cluster Variation Method for Ising Model with NN, NNN, and Plaquette Interactions
    Journal of Statistical Physics, Vol. 94, No. 1. (1 January 1999), pp. 67-89.
    by ENM Cirillo, G Gonnella, M Troccoli, A Maritan
    posted to entropy interactions kikuchi-approximations region-graphs by rsantana on 2007-04-22 13:34:07 as ***** along with 1 person dpf
  • On the convergence of Kikuchi's natural iteration method
    (27 Apr 2004)
    by Marco Pretti
    posted to entropy kikuchi-approximations region-graphs by rsantana on 2007-04-22 13:26:54 as *****
  • Deriving exact results for Ising-like models from the cluster variation method
    Nuclear Physics B - Proceedings Supplements, Vol. 83-84 (April 2000), pp. 706-708.
    by Alessandro Pelizzola
    posted to entropy kikuchi-approximations region-graphs by rsantana on 2007-04-22 13:15:35 as *****
  • Entropy and global Markov properties
    Communications in Mathematical Physics, Vol. 126, No. 3. (28 January 1990), pp. 469-482.
    by S Goldstein, R Kuik, A Schlijper
    posted to entropy kikuchi-approximations markov-network region-graphs by rsantana on 2007-04-22 13:02:07 as *****
  • Random Forests
    Machine Learning, Vol. 45, No. 1. (October 2001), pp. 5-32.
    by Leo Breiman
    posted to graphical-models learning random-forests by rsantana on 2007-04-17 10:29:06 as ***** along with 1 person rabio
  • Progress in Modeling of Protein Structures and Interactions
    Science, Vol. 310, No. 5748. (28 October 2005), pp. 638-642.
    by Ora Schueler-Furman, Chu Wang, Phil Bradley, Kira Misura, David Baker
    posted to bioinformatics interactions protein by rsantana on 2007-04-17 10:25:40 as ***** along with 13 people and 3 groups barry thaliana jwm vavi bicko KyuhoLee marcius eweaver tny nickolay dgront mirzazadeh insectopalo structural_bioinformatics BioinfoCIPF SGU-CIPF
  • Information Theory, Inference & Learning Algorithms
    (15 June 2002)
    by David JC Mackay
    posted to entropy graphical-models inference by rsantana on 2007-04-03 12:40:14 as ***** along with 40 people and 5 groups robotact luispedro matjes delip lop ekatsyrk quianominorleo markusd A_Olympia ansobol yaroslavvb JoSeK ingo jrw rpadams gyuli dariusb simonjudge leidner bayesian BarrosH wnpx filippone marcosmuller danielaugot zielaj daveh spirit_of_numenor sbarthelme anon_pl dwf petrijooste wowbagger nrubens chrisc fishtank rwilliamson poluxmoon robertoalamino brianmc Philosophy_of_Information Blog_and_Wiki_Research AssistiveTechnology inference-group ComplexAdaptiveSystems
  • Estimating Continuous Distributions in Bayesian Classifiers
    pp. 338-345.
    by George H John, Pat Langley
    posted to bayesian bayesian-networks continuous-edas graphical-models by rsantana on 2007-04-03 12:36:40 as ***** along with 6 people and 2 groups JoSeK garyfeng cdnewbee xiaoyan2006 azazello meisi ReadingLab VT_DLRL
  • Cluster variation method in statistical physics and probabilistic graphical models
    Journal of Physics A: Mathematical and General, Vol. 38, No. 33. (19 August 2005), pp. R309-R339.
    by Alessandro Pelizzola
    posted to graphical-models kikuchi-approximations mean-field propagation region-graphs by rsantana on 2007-04-03 10:56:57 as ***** along with 2 people and 1 group lfriedl dpf kdl
  • Cluster graph modification problems
    Discrete Appl. Math., Vol. 144, No. 1-2. (2004), pp. 173-182.
    by Ron Shamir, Roded Sharan, Dekel Tsur
    posted to clustering factor-graphs graphical-models by rsantana on 2007-03-20 12:41:19 as ***** along with 2 people bigbossman mmartin
  • The Discretizable Molecular Distance Geometry Problem
    (5 Aug 2006)
    by Carlile Lavor, Leo Liberti, Nelson Maculan
    posted to protein-design protein by rsantana on 2007-02-06 19:23:33 as *****
  • Unraveling Protein Networks with Power Graph Analysis
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108.
    by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder
    posted to protein network graphs by rsantana on 2008-08-13 17:55:56 as **** along with 17 people and 2 groups sebk roys lptolik MatthiasReimann jmuhlich AbnerCYH royerloic tmmurali stajich chad_davis renatomilani askrajiv Borelli nuin reyez kengg Ema OPIG Berkeley Mycology
  • The discovery of structural form.
    Proceedings of the National Academy of Sciences of the United States of America (31 July 2008)
    by Charles Kemp, Joshua B B Tenenbaum
    posted to learning graphs data-mining by rsantana on 2008-08-13 17:54:01 as **** along with 14 people and 2 groups Zephyrus jyuh jago markusd jmchauvet uhhhhhhhhhhm markstoehr A_Olympia deubel jborn tbloomf OriginalLurch tmmurali shigepong Roswell Cancer Crosstalk logics of knowledge
  • Sexual reproduction reshapes the genetic architecture of digital organisms
    Proceedings of the Royal Society B: Biological Sciences, Vol. 273, No. 1585. (22 February 2006), pp. 457-464.
    by Dusan Misevic, Charles Ofria, Richard E Lenski
    posted to complexity modularity by rsantana on 2007-09-15 22:51:21 as **** along with 2 people and 2 groups mattjb qwermish ComplexAdaptiveSystems DSTO-CAS
  • Mining functional modules in genetic networks with decomposable graphical models.
    OMICS, Vol. 8, No. 2. (2004), pp. 176-188.
    by M Dejori, A Schwaighofer, V Tresp, M Stetter
    posted to bioinformatics data-mining graphical-models by rsantana on 2007-09-05 22:02:47 as **** along with 1 person and 2 groups DavidEdwards ic4 generif_paper
  • An ant algorithm for the conformational analysis of flexible molecules
    Journal of Computational Chemistry, Vol. 9999, No. 9999. (2007), NA.
    by Frits Daeyaert, Marc De Jonge, Luc Koymans, Maarten Vinkers
    posted to aco bioinformatics optimization by rsantana on 2007-05-18 18:51:10 as **** along with 5 people and 1 group BragilMassoud gane5h samjlord jwagoner superpyrin moernerlab
  • Machine learning in bioinformatics: A brief survey and recommendations for practitioners
    Computers in Biology and Medicine, Vol. 36, No. 10. (October 2006), pp. 1104-1125.
    by Harish Bhaskar, David C Hoyle, Sameer Singh
    posted to learning bioinformatics by rsantana on 2007-02-08 17:20:08 as **** along with 2 people drmabuse xili03
  • Simplex Crossover and Linkage Identification: Single-Stage Evolution vS. Multi-Stage Evolution
    (2002)
    by Shigeyoshi Tsutsui, David E Goldberg
    posted to linkage genetic-algorithms by rsantana on 2007-02-08 17:08:35 as **** along with 1 person csights
  • The sensitivity of PBIL to the learning rate, and how detailed balance can remove it
    (2003)
    by JL Shapiro
    edited by C Cotta, De Jong, R Poli, J Rowe
    posted to pbil edas eda-theory by rsantana on 2007-02-08 17:07:19 as **** along with 1 person csights
  • Probabilistic modeling for continuous EDA with Boltzmann selection and Kullback-Leibeler divergence
    (2006), pp. 389-396.
    by Cai Yunpeng, Sun Xiaomin, Jia Peifa
    posted to selection learning edas continuous-edas by rsantana on 2007-01-19 19:43:41 as **** along with 2 people and 4 groups nojhan lmarti EvolutionaryComputation Metaheuristics Optimization estimation_of_distribution_algorithms
  • Robust optimization - A comprehensive survey
    Computer Methods in Applied Mechanics and Engineering, Vol. 196, No. 33-34. (1 July 2007), pp. 3190-3218.
    by Hans-Georg Beyer, Bernhard Sendhoff
    posted to evolutionary-computation heuristics optimization by rsantana on 2007-09-14 22:03:41 as *** along with 10 people and 6 groups nojhan jago lboussou ansobol pdlug ddahlem pverstra quaranta dilbert hugoduncan SOPatTU/e Optimisation Robuste - Robust Optimization EvolutionaryComputation Metaheuristics Optimization SORG
  • Quantum Graphical Models and Belief Propagation
    (9 Aug 2007)
    by Matthew Leifer, David Poulin
    posted to graphical-models inference markov-network propagation trees by rsantana on 2007-09-07 11:48:35 as *** along with 5 people ansobol pdlug jrw artur sflammia
  • Predicting Protein Folds with Structural Repeats Using a Chain Graph Model
    by Yan Liu, Eric P Xing, Jaime Carbonell
    posted to graphical-models protein by rsantana on 2007-04-03 10:42:35 as ***
  • Segmentation Conditional Random Fields (SCRFs): A New Approach for Protein Fold Recognition
    by Yan Liu, Jaime Carbonell, Peter Weigele, Vanathi Gopalakrishnan
    posted to factor-graphs graphical-models protein by rsantana on 2007-04-03 10:41:47 as ***
  • Interpreting Images by Propagating Bayesian Beliefs
    Vol. 9 (1997)
    by Yair Weiss
    edited by Michael C Mozer, Michael I Jordan, Thomas Petsche
    posted to ba by rsantana on 2008-08-17 11:29:32 as ** along with 1 person myranam2
  • CandidTree: visualizing structural uncertainty in similar hierarchies
    Information Visualization, Vol. 6, No. 3. (25 October 2007), pp. 233-246.
    by Lee, Bongshin, Robertson, G George, Czerwinski, Mary, Sims Parr, Cynthia
    posted to visualization tree by rsantana on 2008-07-22 09:43:40 as ** along with 1 person ianturton
  • Identification of Functional Information Subgraphs in Complex Networks
    Physical Review Letters, Vol. 100, No. 23. (2008)
    by Lu\is MA Bettencourt, Vadas Gintautas, Michael I Ham
    posted to modularity complexity by rsantana on 2008-07-03 12:47:14 as ** along with 4 people zheaton dpf AbnerCYH stringertheory
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