70-gene acgh adaptive affymetrix age algorithm alignment alternating amplifications analysis annotation approximation arabidopsis association asthma atherosclerosis bayesian bias bigg binding biology biomarkers blosum62 boosting breast cadmium cancer celegans cell chemogenomics chimpanzee classification clustering code coexpression comparative compendium compound confidence connectivity context-specific copy correlation crm cross-species cross-validation database deep-sequencing deletions design detection differential disease domain dragan drug ecoli education elementary e-map emiel epistasis epxression e-qtl error experiment experimental expression factor factorization fasting feature forest frequent fruitfly function gene genes geneset genetic genome genome-wide genomics graph groningen gsea halleri hapmap herman heterogeneous hexamer hierarchical histone hnf human hybridization hybridizations illumina immunity immunology in inference integration interaction interval item itemset kegg kernel knockout knowledge laplacian lda least level liver localization lps mammalian map mapk mass matrix measurement mechanistic medaka meta-analysis metabolic metabolism metabolomics metal metastasis methodology mice microarray microbe milka mining miranda missing mitochondrial mixed mixture mode model modeling modifications module modules mole monocyte monocytes motif mouse mrna multi-primate mutant mutation myc nadp nazanin network networks niek noise number oligo ontology optimal organization ortholog outbred outlier ovarian pathway pathways peroxisome perturbation phylogeny physical pipeline plant pooling power ppar precision prior prioritization probe programming promoter properties prospective protein protein-coding protein-protein proteomics pts1 qtl quantitative random ranking rat ratio reconstruction regression regularization regulatory review rice rnai roepman sample sara saturation seldi selection semi-supervised sequence series set signal signaling signature similarity situ size snp specificity spectrometry spike-in squares stability stem stephan stimulation stroma studies study subcellular subgraph supervised svm systems test text tgfb thaliana tiling time tissue tissue-specific toll-like tool topology total toxicology trait transcription transduction transitive translation unlabeled variation vst wide wouter xenobiotics yeast zebrafish zellweger