ProtozoaDB: dynamic visualization and exploration of protozoan genomes.

@article{citeulike:1901416, abstract = {ProtozoaDB (http://www.biowebdb.org/protozoadb) is being developed to initially host both genomics and post-genomics data from Plasmodium falciparum, Entamoeba histolytica, Trypanosoma brucei, T. cruzi and Leishmania major, but will hopefully host other protozoan species as more genomes are sequenced. It is based on the Genomics Unified Schema and offers a modern Web-based interface for user-friendly data visualization and exploration. This database is not intended to duplicate other similar efforts such as GeneDB, PlasmoDB, TcruziDB or even TDRtargets, but to be complementary by providing further analyses with emphasis on distant similarities (HMM-based) and phylogeny-based annotations including orthology analysis. ProtozoaDB will be progressively linked to the above-mentioned databases, focusing in performing a multi-source dynamic combination of information through advanced interoperable Web tools such as Web services. Also, to provide Web services will allow third-party software to retrieve and use data from ProtozoaDB in automated pipelines (workflows) or other interoperable Web technologies, promoting better information reuse and integration. We also expect ProtozoaDB to catalyze the development of local and regional bioinformatics capabilities (research and training), and therefore promote/enhance scientific advancement in developing countries.}, address = {Oswaldo Cruz Institute, FIOCRUZ, CCB, Federal University of Santa Catarina (UFSC), ACBS/UNOESC/SC, COPPE, Federal University of Rio de Janeiro, NCE, Federal University of Rio de Janeiro, Instituto de Biologia Molecular do Paran\'{a}, FIOCRUZ, Engineering Military Institute (IME), DCC, Federal University of Rio de Janeiro, Brazil, Knoesis Center, Wright State University, USA, Antioquia University, Colombia and Federal University of Paran\'{a} (UFPR), Brazil.}, author = {D\'{a}vila, Alberto M R M. and Mendes, Pablo N N. and Wagner, Glauber and Tschoeke, Diogo A A. and Cuadrat, Rafael R C R. and Liberman, Felipe and Matos, Luciana and Satake, Thiago and Oca\~{n}a, Kary A C S A. and Triana, Omar and Cruz, S\'{e}rgio M S M. and Juc\'{a}, Henrique C L C. and Cury, Juliano C C. and Silva, Fabricio N N. and Geronimo, Guilherme A A. and Ruiz, Margarita and Ruback, Eduardo and Silva, Floriano P P. and Probst, Christian M M. and Grisard, Edmundo C C. and Krieger, Marco A A. and Goldenberg, Samuel and Cavalcanti, Maria C R C. and Moraes, Milton O O. and Campos, Maria L M L. and Mattoso, Marta }, citeulike-article-id = {1901416}, issn = {1362-4962}, journal = {Nucleic Acids Res}, month = {November}, posted-at = {2007-11-28 21:24:13}, priority = {5}, title = {ProtozoaDB: dynamic visualization and exploration of protozoan genomes.}, url = {http://view.ncbi.nlm.nih.gov/pubmed/17981844}, year = {2007} }

TY - JOUR ID - citeulike:1901416 L3 - citeulike-article-id:1901416 TI - ProtozoaDB: dynamic visualization and exploration of protozoan genomes. JF - Nucleic Acids Res AD - Oswaldo Cruz Institute, FIOCRUZ, CCB, Federal University of Santa Catarina (UFSC), ACBS/UNOESC/SC, COPPE, Federal University of Rio de Janeiro, NCE, Federal University of Rio de Janeiro, Instituto de Biologia Molecular do Paraná, FIOCRUZ, Engineering Military Institute (IME), DCC, Federal University of Rio de Janeiro, Brazil, Knoesis Center, Wright State University, USA, Antioquia University, Colombia and Federal University of Paraná (UFPR), Brazil. SN - 1362-4962 N2 - ProtozoaDB (http://www.biowebdb.org/protozoadb) is being developed to initially host both genomics and post-genomics data from Plasmodium falciparum, Entamoeba histolytica, Trypanosoma brucei, T. cruzi and Leishmania major, but will hopefully host other protozoan species as more genomes are sequenced. It is based on the Genomics Unified Schema and offers a modern Web-based interface for user-friendly data visualization and exploration. This database is not intended to duplicate other similar efforts such as GeneDB, PlasmoDB, TcruziDB or even TDRtargets, but to be complementary by providing further analyses with emphasis on distant similarities (HMM-based) and phylogeny-based annotations including orthology analysis. ProtozoaDB will be progressively linked to the above-mentioned databases, focusing in performing a multi-source dynamic combination of information through advanced interoperable Web tools such as Web services. Also, to provide Web services will allow third-party software to retrieve and use data from ProtozoaDB in automated pipelines (workflows) or other interoperable Web technologies, promoting better information reuse and integration. We also expect ProtozoaDB to catalyze the development of local and regional bioinformatics capabilities (research and training), and therefore promote/enhance scientific advancement in developing countries. AU - Dávila, Alberto M R AU - Mendes, Pablo N AU - Wagner, Glauber AU - Tschoeke, Diogo A AU - Cuadrat, Rafael R C AU - Liberman, Felipe AU - Matos, Luciana AU - Satake, Thiago AU - Ocaña, Kary A C S AU - Triana, Omar AU - Cruz, Sérgio M S AU - Jucá, Henrique C L AU - Cury, Juliano C AU - Silva, Fabricio N AU - Geronimo, Guilherme A AU - Ruiz, Margarita AU - Ruback, Eduardo AU - Silva, Floriano P AU - Probst, Christian M AU - Grisard, Edmundo C AU - Krieger, Marco A AU - Goldenberg, Samuel AU - Cavalcanti, Maria C R AU - Moraes, Milton O AU - Campos, Maria L M AU - Mattoso, Marta PY - 2007/11/02/ UR - http://view.ncbi.nlm.nih.gov/pubmed/17981844 ER -