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okarsligil's library [138 articles]

最近录入 okarsligil's 文献库.
  • Ribosomally synthesized peptides with antimicrobial properties: biosynthesis, structure, function, and applications
    Biotechnology Advances, Vol. 21, No. 6. (September 2003), pp. 465-499.
    by Maria Papagianni
    posted to antimicrobial peptide structure by okarsligil on 2008-02-21 16:34:51 as ***
  • Volatility trading via temporal pattern recognition in quantized nancial time series
    (2001)
    by P Tino, C Schittenkopf, G Dorffner
    posted to timeseries by okarsligil on 2007-07-24 21:10:14 as ** along with 1 group Bioinformatics
  • Denoising Deterministic Time Series
    (21 Apr 2006)
    by Steven P Lalley, Andrew B Nobel
    posted to denoising by okarsligil on 2007-03-22 20:32:51 as ** along with 2 people and 1 group ansobol proportional Bioinformatics
  • On denoising and best signal representation
    Information Theory, IEEE Transactions on, Vol. 45, No. 7. (1999), pp. 2225-2238.
    by H Krim, D Tucker, S Mallat, D Donoho
    posted to denoising by okarsligil on 2007-03-22 20:23:54 as ** along with 1 person and 2 groups alexr Autoregulation Bioinformatics
  • An integrated mass spectrometric and computational framework for the analysis of protein interaction networks
    Nature Biotechnology, Vol. 25, No. 3. (25 February 2007), pp. 345-352.
    by Oliver Rinner, Lukas N Mueller, Martin Hubálek, Markus Müller, Matthias Gstaiger, Ruedi Aebersold
    posted to ms network protein by okarsligil on 2007-03-19 13:10:19 as ** along with 5 people and 1 group jyuh jfr Dualsystems nedwards mingzhi Bioinformatics
  • Reconstructing dynamic regulatory maps.
    Mol Syst Biol, Vol. 3 (2007)
    by J Ernst, O Vainas, CT Harbison, I Simon, Z Bar-Joseph
    posted to dynamic map regulatory by okarsligil on 2007-02-13 19:09:13 as *** along with 5 people and 1 group aswin mikaelhuss SeungjoonOh berthoums natstreet Bioinformatics
  • Classes of complex networks defined by role-to-role connectivity profiles
    Nat Phys, Vol. 3, No. 1. (January 2007), pp. 63-69.
    by Roger Guimera, Marta Sales-Pardo, Luis A Amaral
    posted to network connectivity by okarsligil on 2007-01-11 14:29:43 as ** along with 4 people and 1 group AbnerCYH aalibes jaspervoskuilen biehl Bioinformatics
  • What is a support vector machine?
    Nature Biotechnology, Vol. 24, No. 12., pp. 1565-1567.
    by William S Noble
    posted to svm tutorial by okarsligil on 2006-12-14 17:40:08 as ***** along with 7 people and 3 groups frohike Yanno jwm ramensky BIBLIOma cerami akastrin Radiation_Damage Stressosome Bioinformatics
  • Combinatorial pattern discovery in biological sequences: The TEIRESIAS algorithm.
    Bioinformatics, Vol. 14, No. 1. (1998), pp. 55-67.
    by I Rigoutsos, A Floratos
    posted to discovery pattern teiresias by okarsligil on 2006-10-19 14:16:23 as *** along with 3 people and 1 group thaliana dquest heliopais Bioinformatics
  • A linguistic model for the rational design of antimicrobial peptides
    Nature, Vol. 443, No. 7113., pp. 867-869.
    by Christopher Loose, Kyle Jensen, Isidore Rigoutsos, Gregory Stephanopoulos
    posted to antimicrobial motif peptide by okarsligil on 2006-10-19 14:10:06 as read along with 7 people and 1 group loison Yanno dayjm mtagaya madhadron pjkiley shabib Bioinformatics
  • Principles of microRNA regulation of a human cellular signaling network.
    Mol Syst Biol, Vol. 2 (2006)
    by Q Cui, Z Yu, EO Purisima, E Wang
    posted to network regulation signaling by okarsligil on 2006-10-17 14:54:47 as ** along with 7 people and 3 groups bootsy jfr marcius tardigrade mtagaya ealloza maralena Bioinformatics BioinfoCIPF SGU-CIPF
  • Quantitative and predictive model of transcriptional control of the Drosophila melanogaster even skipped gene.
    Nat Genet (17 September 2006)
    by Hilde Janssens, Shuling Hou, Johannes Jaeger, Ah-Ram R Kim, Ekaterina Myasnikova, David Sharp, John Reinitz
    posted to model predictive systems-biology transcription by okarsligil on 2006-09-28 14:32:13 as *** along with 6 people and 2 groups brant dpollard adepace allPowerde Stew emptyhb Bioinformatics EisenLab
  • How does DNA sequence motif discovery work?
    Nature Biotechnology, Vol. 24, No. 8., pp. 959-961.
    by Patrik D'Haeseleer
    posted to dna motif sequence by okarsligil on 2006-09-07 18:59:23 as *** along with 4 people and 1 group isimpson antonkratz xi03 idonaldson Bioinformatics
  • Approximate explicit constrained linear model predictive control via orthogonal search tree
    (2003)
    by T Johansen, A Grancharova
    posted to constrained explicit mpc orthagonal by okarsligil on 2006-08-01 21:49:33 as ** along with 1 group Bioinformatics
  • Characterization of the solution to a constrained H-infinity optimal control problem
    (14 April 2005)
    by DQ Mayne, SV Rakovic, RB Vinter, EC Kerrigan
    posted to h-inifinity min-max mpc by okarsligil on 2006-08-01 21:32:31 as ** along with 2 people and 2 groups ansobol cjones Bioinformatics IFA_Hybrid
  • A Framework for Robustness Analysis of Constrained Finite Receding Horizon Control
    (1998)
    by J Primbs, V Nevisti'c
    posted to mpc robustness by okarsligil on 2006-08-01 21:30:23 as ** along with 1 group Bioinformatics
  • Relaxing the optimality condition in receding horizon control
    (2000)
    by A Jadbabaie, J Hauser
    posted to mpc stability by okarsligil on 2006-08-01 21:18:29 as ** along with 1 group Bioinformatics
  • A data integration methodology for systems biology: Experimental verification
    PNAS, Vol. 102, No. 48. (29 November 2005), pp. 17302-17307.
    by Daehee Hwang, Jennifer J Smith, Deena M Leslie, Andrea D Weston, Alistair G Rust, Stephen Ramsey, Pedro de Atauri, Andrew F Siegel, Hamid Bolouri, John D Aitchison, Leroy Hood
    posted to biology data integration systems by okarsligil on 2006-05-25 19:09:52 as ** along with 10 people and 2 groups Retchless tmmurali dragonrez lfriedl lyongu eweaver wnpx mbeautru GeeSharpMinor nedwards kdl Bioinformatics
  • Proteome analysis of yeast response to various nutrient limitations
    Mol Syst Biol, Vol. 2 (2006), pp. msb4100069-E1-msb4100069-E16.
    by Annemieke Kolkman, Pascale Daran-Lapujade, Asier Fullaondo, Maurien M Olsthoorn, Jack T Pronk, Monique Slijper, Albert J Heck
    posted to limitations nutrient proteomics yeast by okarsligil on 2006-05-25 19:03:56 as ** along with 3 people and 2 groups Retchless pau roys Bioinformatics RNAtransport
  • Using metabolic flux data to further constrain the metabolic solution space and predict internal flux patterns: the
    Biotechnology and Bioengineering, Vol. 86, No. 3. (6 April 2004), pp. 317-331.
    by Sharon J Wiback, Radhakrishnan Mahadevan, B& Bernhard
    posted to flux metabolic mode by okarsligil on 2006-05-02 15:37:54 as ** along with 1 person and 2 groups cate Bioinformatics biospec
  • Modeling gene expression control using Omes Law
    Mol Syst Biol, Vol. 2, No. 1. (11 April 2006), pp. msb4100055-E1-msb4100055-E3.
    by Harmen J Bussemaker
    posted to expression gene modeling by okarsligil on 2006-04-25 16:46:08 as **** along with 2 people and 2 groups nsamways oannes Bioinformatics Regulomics_UCHSC
  • Deciphering principles of transcription regulation in eukaryotic genomes
    Mol Syst Biol, Vol. 2, No. 1. (11 April 2006), pp. msb4100054-E1-msb4100054-E10.
    by Dat H Nguyen, Patrik D'Haeseleer
    posted to eukaryote motif regulation by okarsligil on 2006-04-25 16:38:51 as *** along with 5 people and 2 groups isimpson pau koller reidy mikaelhuss Bioinformatics RNAtransport
  • What are DNA sequence motifs?
    Nature Biotechnology, Vol. 24, No. 4., pp. 423-425.
    by Patrik D'Haeseleer
    posted to dna motif by okarsligil on 2006-04-11 21:11:27 as *** along with 3 people and 1 group isimpson rlhsiao ekoenig Bioinformatics
  • Origins of fractality in the growth of complex networks
    Nat Phys, Vol. 2, No. 4. (April 2006), pp. 275-281.
    by Chaoming Song, Shlomo Havlin, Hernan A Makse
    posted to complex fractal network by okarsligil on 2006-04-11 20:36:33 as **** along with 2 people and 1 group gane5h muraken Bioinformatics
  • Chance and necessity in the evolution of minimal metabolic networks
    Nature, Vol. 440, No. 7084., pp. 667-670.
    by Csaba Pã¡l, Balã¡zs Papp, Martin J Lercher, Pã©ter Csermely, Stephen G Oliver, Laurence D Hurst
    posted to evolution metabolic network by okarsligil on 2006-04-04 20:52:08 as *** along with 8 people and 2 groups michaelbarton icases Borelli ccots nirfriedman rabu mikaelhuss edwardmorrissey Bioinformatics TNT
  • Why highly expressed proteins evolve slowly
    Proceedings of the National Academy of Sciences, Vol. 102, No. 40. (21 September 2005), pp. 14338-14343.
    by Allan D Drummond, Jesse D Bloom, Christoph Adami, Claus O Wilke, Frances H Arnold
    posted to evolution protein by okarsligil on 2006-03-28 18:23:12 as *** along with 1 person and 1 group ccots Bioinformatics
  • Evolving strategies for enzyme engineering
    Current Opinion in Structural Biology, Vol. 15, No. 4. (August 2005), pp. 447-452.
    by Jesse D Bloom, Michelle M Meyer, Peter Meinhold, Christopher R Otey, Derek Macmillan, Frances H Arnold
    posted to enzyme evolution by okarsligil on 2006-03-28 18:17:24 as ** along with 1 person and 3 groups marcius Bioinformatics BioinfoCIPF SGU-CIPF
  • Ab initio genotype-phenotype association reveals intrinsic modularity in genetic networks
    Mol Syst Biol, Vol. 2, No. 1. (31 January 2006), pp. msb4100047-E1-msb4100047-E14.
    by Noam Slonim, Olivier Elemento, Saeed Tavazoie
    posted to genotype network phenotype by okarsligil on 2006-03-22 20:58:30 as **** along with 5 people and 2 groups ccots balajis cmm koller dylan77 Bioinformatics FAB-lab
  • Stochastic protein expression in individual cells at the single molecule level
    Nature, Vol. 440, No. 7082., pp. 358-362.
    by Long Cai, Nir Friedman, Sunney X Xie
    posted to expression protein stochastic by okarsligil on 2006-03-22 19:55:05 as *** along with 12 people and 1 group jjray austin ccots bayesian wnpx balabu cottrell jiyu mmt jtaylor margaritis cjeans Bioinformatics
  • Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome.
    Genome Biol, Vol. 6, No. 5. (2005)
    by AK Ramani, RC Bunescu, RJ Mooney, EM Marcotte
    posted to human interactome protein by okarsligil on 2006-03-22 18:43:27 as ** along with 16 people and 3 groups setar tmmurali dragonrez lfriedl ccots balajis maryee brant opheliav davidandrzej wnpx rlhsiao bundschu mikaelhuss raiyar grahamc kdl Bioinformatics generif_paper
  • Robust Salmonella metabolism limits possibilities for new antimicrobials
    Nature, Vol. 440, No. 7082., pp. 303-307.
    by Daniel Becker, Matthias Selbach, Claudia Rollenhagen, Matthias Ballmaier, Thomas F Meyer, Matthias Mann, Dirk Bumann
    posted to antimicrobial metabolism salmonella by okarsligil on 2006-03-16 19:06:01 as *** along with 2 people and 1 group kentsis shung Bioinformatics
  • Folding DNA to create nanoscale shapes and patterns
    Nature, Vol. 440, No. 7082., pp. 297-302.
    by Paul WK Rothemund
    posted to dna folding nanoscale protein by okarsligil on 2006-03-16 19:04:19 as ** along with 12 people and 2 groups gniebler karlberggren knaseanka eckart_bindewald dullhunk madhadron cmm stsaft Kiarostami dna justforscraps bethbromley Bioinformatics FAB-lab
  • Hot regions in protein--protein interactions: the organization and contribution of structurally conserved hot spot residues.
    J Mol Biol, Vol. 345, No. 5. (4 February 2005), pp. 1281-1294.
    by O Keskin, B Ma, R Nussinov
    posted to motif protein structure by okarsligil on 2006-03-08 23:26:10 as ** along with 8 people and 2 groups mdimmic ana barry baaden bicko j3xucite bilab xz structural_bioinformatics Bioinformatics
  • Minimotif Miner: a tool for investigating protein function
    Nature Methods, Vol. 3, No. 3. (17 February 2006), pp. 175-177.
    by Sudha Balla, Vishal Thapar, Snigdha Verma, Thaibinh Luong, Tanaz Faghri, Chun-Hsi Huang, Sanguthevar Rajasekaran, Jacob, Jessica H Shinn, William A Mohler, Mark W Maciejewski, Michael R Gryk, Bryan Piccirillo, Stanley R Schiller, Martin R Schiller
    posted to function motif protein by okarsligil on 2006-03-08 20:46:03 as *** along with 2 people and 1 group Evangelia j3xucite Bioinformatics
  • A bottom-up approach to gene regulation
    Nature, Vol. 439, No. 7078. (16 February 2006), pp. 856-860.
    by Nicholas J Guido, Xiao Wang, David Adalsteinsson, David Mcmillen, Jeff Hasty, Charles R Cantor, Timothy C Elston, JJ Collins
    posted to gene regulation by okarsligil on 2006-02-16 20:52:00 as **** along with 14 people and 2 groups tmmurali rklancer snuppepuppan jyuh bayesian balicea samal madhadron balabu johncumbers mmt proulx dbikard nklee Bioinformatics SynBioSys
  • Genetics: Copies count
    Nature, Vol. 439, No. 7078. (16 February 2006), pp. 798-799.
    by Joseph H Nadeau, Charles Lee
    posted to copies genetics by okarsligil on 2006-02-16 20:33:30 as ** along with 1 person and 1 group ccots Bioinformatics
  • Screening for peptide drugs from the natural repertoire of biodiverse protein folds
    Nature Biotechnology, Vol. 24, No. 2. (07 February 2006), pp. 177-183.
    by Paul M Watt
    posted to folding peptide protein by okarsligil on 2006-02-09 23:09:09 as *** along with 1 person and 1 group Evangelia Bioinformatics
  • notes Flip-flopping membrane proteins
    Nature Structural & Molecular Biology, Vol. 13, No. 2., pp. 94-96.
    by James U Bowie
    posted to membrane protein by okarsligil on 2006-02-07 15:17:58 as ** along with 1 group Bioinformatics
  • Gene network shaping of inherent noise spectra
    Nature, Vol. 439, No. 7076., pp. 608-611.
    by DW Austin, MS Allen, JM Mccollum, RD Dar, JR Wilgus, GS Sayler, NF Samatova, CD Cox, ML Simpson
    posted to gene network noise regulation spectra by okarsligil on 2006-02-02 16:23:09 as *** along with 4 people and 1 group dylanwalker madhadron balabu margaritis Bioinformatics
  • Chemical analysis by ultrahigh-resolution nuclear magnetic resonance in the Earth's magnetic field
    Nature Physics (22 January 2006)
    by Stephan
    posted to nmr by okarsligil on 2006-01-26 21:40:12 as ** along with 1 group Bioinformatics
  • Mapping structural interactions using in-cell NMR spectroscopy (STINT-NMR)
    Nature Methods, Vol. 3, No. 2. (23 January 2006), pp. 91-93.
    by David S Burz, Kaushik Dutta, David Cowburn, Alexander Shekhtman
    posted to interaction protein structural by okarsligil on 2006-01-26 21:10:37 as ** along with 1 group Bioinformatics
  • NMR mapping of protein interactions in living cells
    Nature Methods, Vol. 3, No. 2., pp. 80-81.
    by Philipp Selenko, Gerhard Wagner
    posted to interaction nmr protein by okarsligil on 2006-01-26 21:01:13 as ** along with 1 group Bioinformatics
  • Critical nodes in signalling pathways: insights into insulin action
    Nat Rev Mol Cell Biol, Vol. 7, No. 2. (February 2006), pp. 85-96.
    by Cullen M Taniguchi, Brice Emanuelli, Ronald C Kahn
    posted to nodes pathway signal by okarsligil on 2006-01-24 21:37:07 as *** along with 3 people and 2 groups tmmurali julius cjeans Bioinformatics SysbioMPI-TCells
  • Creation and implications of a phenome-genome network
    Nature Biotechnology, Vol. 24, No. 1. (10 January 2006), pp. 55-62.
    by Atul J Butte, Isaac S Kohane
    posted to genome network phenome by okarsligil on 2006-01-12 16:13:37 as *** along with 8 people and 2 groups jyuh BioGeek bpb balajis wnpx tag elsiatcase eukfn Bioinformatics metric_embeddings
  • Inference in Bayesian networks
    Nature Biotechnology, Vol. 24, No. 1., pp. 51-53.
    by Chris J Needham, James R Bradford, Andrew J Bulpitt, David R Westhead
    posted to bayesian inference network by okarsligil on 2006-01-12 16:10:32 as **** along with 10 people and 3 groups Pragmatist quianominorleo Yanno jrw garyfeng Borelli ddahlem lujiec kozlak jo_davies ReadingLab Bioinformatics ThinkBridge
  • A quantitative protein interaction network for the ErbB receptors using protein microarrays
    Nature (06 November 2005)
    by Richard B Jones, Andrew Gordus, Jordan A Krall, Gavin Macbeath
    posted to interaction network protein by okarsligil on 2006-01-11 22:02:29 as ** along with 6 people and 4 groups jfr marcius tny julius koller pjasper Bioinformatics SysbioMPI-TCells BioinfoCIPF SGU-CIPF
  • Bayesian clinical trials
    Nature Reviews Drug Discovery, Vol. 5, No. 1., pp. 27-36.
    by Donald A Berry
    posted to bayesian by okarsligil on 2006-01-10 19:03:35 as *** along with 2 people and 1 group Yanno jyuh Bioinformatics
  • An Empirical energy potential with a reference state for Protein Fold and Sequence Recognition
    (1999)
    by S Miyazawa
    posted to folding potential protein by okarsligil on 2006-01-10 17:19:04 as ** along with 1 group Bioinformatics
  • Exploration of the Function and Organization of the Yeast Early Secretory Pathway through an Epistatic Miniarray Profile
    Cell, Vol. 123, No. 3. (4 November 2005), pp. 507-519.
    by Maya Schuldiner, Sean R Collins, Natalie J Thompson, Vladimir Denic, Arunashree Bhamidipati, Thanuja Punna, Jan Ihmels, Brenda Andrews, Charles Boone, Jack F Greenblatt
    posted to gene network pathway yeast by okarsligil on 2006-01-10 15:12:50 as *** along with 6 people and 1 group adiel balajis nirfriedman jtaylor cjhall hplatero Bioinformatics
  • Information-based clustering.
    Proc Natl Acad Sci U S A (13 December 2005)
    by Noam Slonim, Gurinder Singh S Atwal, Gasper Tkacik, William Bialek
    posted to clustering by okarsligil on 2005-12-21 15:53:51 as ** along with 9 people and 1 group quianominorleo tmmurali kuhn textoris bayesian balicea jdiggans dylan77 nklee Bioinformatics
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