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nklee's library [316 articles]

最近录入 nklee's 文献库.
  • Identification and characterization of multi-species conserved sequences.
    Genome Res, Vol. 13, No. 12. (December 2003), pp. 2507-2518.
    by EH Margulies, M Blanchette, D Haussler, ED Green,
    posted to dataset comparative by nklee on 2008-07-18 02:05:47 as ** along with 5 people and 1 group operon ujh brant sujaikumar bezdan EisenLab
  • Deterministic annealing EM algorithm
    Neural Networks, Vol. 11, No. 2. (31 March 1998), pp. 271-282.
    by Naonori Ueda, Ryohei Nakano
    posted to no-tag by nklee on 2008-07-16 07:07:00 as **
  • Computational methods for transcriptional regulation.
    Curr Opin Genet Dev, Vol. 15, No. 2. (April 2005), pp. 214-221.
    by ED Siggia
    posted to review by nklee on 2008-07-16 03:57:31 as ** along with 5 people and 2 groups Borelli bertelsen barry dpollard koller Bioinformatics EisenLab
  • Probabilistic clustering of sequences: Inferring new bacterial regulons by comparative genomics
    PNAS, Vol. 99, No. 11. (2002), pp. 7323-7328.
    by Erik van Nimwegen†, Mihaela Zavolan, Nikolaus Rajewsky, Eric D Siggia
    posted to genomic comparative clustering by nklee on 2008-07-16 01:20:21 as **
  • Multiple sequence alignment
    Current Opinion in Structural Biology, Vol. 16, No. 3. (June 2006), pp. 368-373.
    by Robert C Edgar, Serafim Batzoglou
    posted to review by nklee on 2008-07-14 08:21:05 as ** along with 5 people and 1 group edvin caporaso rabio cjeans mingzhi biomedical-nlp
  • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.
    Nature, Vol. 408, No. 6814. (14 December 2000), pp. 796-815.
    by
    posted to thaliana arabidopsis by nklee on 2008-07-14 03:55:44 as ** along with 8 people and 1 group CitoJam sdinka ataheri moborg echinotrix timflutre byy ArtemPankin plant-development
  • Enhanced position weight matrices using mixture models
    Bioinformatics, Vol. 21, No. Suppl_1. (2005), pp. i204-i212.
    by Sridhar Hannenhalli, Li-San Wang
    posted to model mixture by nklee on 2008-07-08 05:33:45 as **
  • Finite Mixture Models
    (02 October 2000)
    by Geoffrey Mclachlan, David Peel
    posted to mixture by nklee on 2008-07-08 05:27:37 as ** along with 4 people amsantos ctacmo OscarRueda vplagnol
  • Optimal Smoothing of Kernel-Based Topographic Maps with Application to Density-Based Clustering of Shapes
    The Journal of VLSI Signal Processing, Vol. 37, No. 2. (1 June 2004), pp. 211-222.
    by Marc M Van Hulle, Temujin Gautama
    posted to maximum likelihood by nklee on 2008-06-27 06:10:35 as **
  • Non-additivity in protein-DNA binding.
    Bioinformatics, Vol. 21, No. 10. (15 May 2005), pp. 2254-2263.
    by RA O'Flanagan, G Paillard, R Lavery, AM Sengupta
    posted to energy dependency binding by nklee on 2008-06-20 05:35:23 as ** along with 2 people and 1 group reidy blobbybirdman UH - Computational Biology
  • Revisiting the Saccharomyces cerevisiae predicted ORFeome
    Genome Res. (23 May 2008), gr.076661.108.
    by Qian-Ru Li, Anne-Ruxandra Carvunis, Haiyuan Yu, Jing-Dong J Han, Quan Zhong, Nicolas Simonis, Stanley Tam, Tong Hao, Niels J Klitgord, Denis Dupuy, Danny Mou, Ilan Wapinski, Aviv Regev, David E Hill, Michael E Cusick, Marc Vidal
    posted to yeast genome by nklee on 2008-06-20 02:38:24 as ** along with 3 people and 1 group biehl stajich dbensasson Berkeley Mycology
  • Tuning in to the signals: noncoding sequence conservation in vertebrate genomes
    Trends in Genetics, Vol. In Press, Corrected Proof
    by Greg Elgar, Tanya Vavouri
    posted to comparative by nklee on 2008-06-20 02:35:53 as ** along with 2 people dchughes djkt
  • Market segmentation by maximum likelihood clustering using choice elasticities
    European journal of operational research, Vol. 154, No. 3. (2004), pp. 779-786.
    by Harald Hruschka, Werner Fettes, Markus Probst
    posted to maximum likelihood by nklee on 2008-06-18 09:08:55 as **
  • Maximum likelihood competitive learning
    Vol. 2 (1990)
    by S Nowlan
    edited by D Touretzky
    posted to maximum likelihood clustering by nklee on 2008-06-17 07:42:54 as **
  • ROC analysis: applications to the classification of biological sequences and 3D structures
    Brief Bioinform (11 January 2008), bbm064.
    by Paolo Sonego, Andras Kocsor, Sandor Pongor
    posted to roc analysis by nklee on 2008-06-16 06:27:01 as ** along with 4 people spsdigest neils girschick cjeans
  • Unsupervised learning of finite mixture models
    Pattern Analysis and Machine Intelligence, IEEE Transactions on, Vol. 24, No. 3. (2002), pp. 381-396.
    by MAF Figueiredo, AK Jain
    posted to mixture by nklee on 2008-06-12 05:09:28 as ** along with 4 people and 2 groups alexr balicea shilad edmundo59 Autoregulation GroupLens
  • Testing the number of components in a normal mixture
    Biometrika, Vol. 88, No. 3. (1 October 2001), pp. 767-778.
    by Yungtai Lo, Nancy R Mendell, Donald B Rubin
    posted to mixture by nklee on 2008-06-12 05:04:28 as ** along with 1 person gjuggler
  • Self-organizing mixture networks for probability density estimation
    Neural Networks, IEEE Transactions on, Vol. 12, No. 2. (2001), pp. 405-411.
    by H Yin, NM Allinson
    posted to mixture by nklee on 2008-06-10 02:53:11 as **
  • Self-organizing maps, vector quantization, and mixture modeling
    Neural Networks, IEEE Transactions on, Vol. 12, No. 6. (2001), pp. 1299-1305.
    by T Heskes
    posted to model mixture by nklee on 2008-06-10 02:50:15 as ** along with 1 person zhengzhong
  • Differential binding of quadruplex structures of muscle-specific genes regulatory sequences by MyoD, MRF4 and myogenin
    Nucl. Acids Res. (29 May 2008), gkn340.
    by Anat Yafe, Jeny Shklover, Pnina Weisman-Shomer, Eyal Bengal, Michael Fry
    posted to muscle by nklee on 2008-06-06 11:22:21 as ** along with 1 person and 1 group jmrivort G-quadruplex
  • Natural selection promotes the conservation of linkage of co-expressed genes
    Trends in Genetics, Vol. 18, No. 12. (1 December 2002), pp. 604-606.
    by Laurence D Hurst, Elizabeth J Williams, Csaba Pál
    posted to conservation by nklee on 2008-05-30 03:19:49 as **
  • Conservation of divergent transcription in fungi
    Trends in Genetics, Vol. 24, No. 5. (May 2008), pp. 207-211.
    by Philip R Kensche, Martin Oti, Bas E Dutilh, Martijn A Huynen
    posted to conservation comparative by nklee on 2008-05-30 03:13:26 as ** along with 1 person and 1 group stajich Berkeley Mycology
  • A new approach to the assessment of the quality of predictions of transcription factor binding sites
    Journal of Biomedical Informatics, Vol. 40, No. 2. (April 2007), pp. 139-149.
    by Szymon Nowakowski, Jerzy Tiuryn
    posted to evaluation by nklee on 2008-05-20 03:16:24 as **
  • A new model of self-organizing neural networks and its application in data projection
    Neural Networks, IEEE Transactions on, Vol. 12, No. 1. (2001), pp. 153-158.
    by Mu-Chun Su, Hsiao-Te Chang
    posted to neural network dsom by nklee on 2008-05-16 00:16:09 as **
  • Nucleosome positions predicted through comparative genomics
    Nature Genetics, Vol. 38, No. 10. (10 September 2006), pp. 1210-1215.
    by Ilya P Ioshikhes, Istvan Albert, Sara J Zanton, Franklin B Pugh
    posted to nucleosome by nklee on 2008-05-14 23:55:43 as **
  • Statistics review 1: presenting and summarising data.
    Crit Care, Vol. 6, No. 1. (February 2002), pp. 66-71.
    by E Whitley, J Ball
    posted to statistics by nklee on 2008-05-09 03:32:05 as ** along with 1 person jyuh
  • Statistics review 2: samples and populations.
    Crit Care, Vol. 6, No. 2. (April 2002), pp. 143-148.
    by E Whitley, J Ball
    posted to statistics by nklee on 2008-05-09 03:30:34 as ** along with 1 person jyuh
  • Statistics review 3: hypothesis testing and P values.
    Crit Care, Vol. 6, No. 3. (June 2002), pp. 222-225.
    by E Whitley, J Ball
    posted to statistics by nklee on 2008-05-09 03:30:12 as ** along with 1 person jyuh
  • Statistics review 4: sample size calculations.
    Crit Care, Vol. 6, No. 4. (August 2002), pp. 335-341.
    by E Whitley, J Ball
    posted to statistics by nklee on 2008-05-09 03:27:57 as ** along with 1 person jyuh
  • Statistics review 2: Samples and populations
    Critical Care, Vol. 7, No. 1. (2003)
    by Elise Whitley, Jonathan Ball
    posted to statistics by nklee on 2008-05-09 03:27:10 as **
  • Statistics review 9: one-way analysis of variance.
    Crit Care, Vol. 8, No. 2. (April 2004), pp. 130-136.
    by V Bewick, L Cheek, J Ball
    posted to statistics by nklee on 2008-05-09 03:26:23 as ** along with 1 person jyuh
  • Statistics review 10: further nonparametric methods.
    Crit Care, Vol. 8, No. 3. (June 2004), pp. 196-199.
    by V Bewick, L Cheek, J Ball
    posted to statistics by nklee on 2008-05-09 03:25:29 as ** along with 1 person jyuh
  • Statistics review 11: assessing risk.
    Crit Care, Vol. 8, No. 4. (August 2004), pp. 287-291.
    by V Bewick, L Cheek, J Ball
    posted to statistics by nklee on 2008-05-09 03:24:43 as ** along with 1 person jyuh
  • Statistics review 12: survival analysis.
    Crit Care, Vol. 8, No. 5. (October 2004), pp. 389-394.
    by V Bewick, L Cheek, J Ball
    posted to statistical by nklee on 2008-05-09 03:24:19 as ** along with 1 person jyuh
  • Statistics review 14: Logistic regression.
    Crit Care, Vol. 9, No. 1. (February 2005), pp. 112-118.
    by V Bewick, L Cheek, J Ball
    posted to statistics by nklee on 2008-05-09 03:23:45 as ** along with 2 people jyuh hpiwowar
  • Statistics review 13: receiver operating characteristic curves.
    Crit Care, Vol. 8, No. 6. (December 2004), pp. 508-512.
    by V Bewick, L Cheek, J Ball
    posted to statistics by nklee on 2008-05-09 03:21:51 as ** along with 1 person and 1 group jyuh Motif Discovery
  • Fast and systematic genome-wide discovery of conserved regulatory elements using a non-alignment based approach.
    Genome Biol, Vol. 6, No. 2. (2005)
    by O Elemento, S Tavazoie
    posted to genomic comprative by nklee on 2008-05-09 01:08:22 as ** along with 2 people and 2 groups indigoviolet grahamc EisenLab ParkinsonLab_at_MaRS
  • Analyzing Protein-DNA Recognition Mechanisms
    Structure, Vol. 12, No. 1. (16 March 2004), pp. 113-122.
    by Guillaume Paillard, Richard Lavery
    posted to dependency by nklee on 2008-05-08 00:47:28 as **
  • MOGAMOD: Multi-objective genetic algorithm for motif discovery
    Expert Systems with Applications, Vol. In Press, Corrected Proof
    by Mehmet Kaya
    posted to genetic algorithm by nklee on 2008-05-02 07:35:23 as **
  • More robust detection of motifs in coexpressed genes by using phylogenetic information
    BMC Bioinformatics, Vol. 7, No. 1. (2006)
    by Pieter Monsieurs, Gert Thijs, Abeer Fadda, Sigrid De Keersmaecker, Jozef Vanderleyden, Bart De Moor, Kathleen Marchal
    posted to genomics comparative by nklee on 2008-05-02 07:25:54 as **
  • Two strategies for gene regulation by promoter nucleosomes
    Genome Res. (30 April 2008), gr.076059.108.
    by Itay Tirosh, Naama Barkai
    posted to nucleosome by nklee on 2008-05-01 00:23:12 as ** along with 7 people dchughes aalibes djkt fpattyn vega emptyhb roys
  • A graph-based motif detection algorithm models complex nucleotide dependencies in transcription factor binding sites
    Nucleic Acids Research, Vol. 34, No. 20. (November 2006), pp. 5730-5739.
    by Naughton, T Brian, Fratkin, Eugene, Batzoglou, Serafim, Brutlag, L Douglas
    posted to dependency by nklee on 2008-04-30 04:16:02 as **
  • Nearest-neighbor non-additivity versus long-range non-additivity in TATA-box structure and its implications for TBP-binding mechanism
    Nucl. Acids Res., Vol. 35, No. 13. (26 July 2007), pp. 4409-4419.
    by Hana Faiger, Marina Ivanchenko, Tali E Haran
    posted to dependency by nklee on 2008-04-29 05:53:44 as ** along with 1 person emptyhb
  • Prediction of complete gene structures in human genomic DNA.
    J Mol Biol, Vol. 268, No. 1. (25 April 1997), pp. 78-94.
    by C Burge, S Karlin
    posted to dependency by nklee on 2008-04-28 06:06:16 as ** along with 9 people and 2 groups bandrewfox pcahan1 indigoviolet kaspermunch dullhunk dquest wenhan GustavoLacerda nicholso Bioinformatics EisenLab
  • Qualifying the relationship between sequence conservation and molecular function
    Genome Res., Vol. 18, No. 2. (1 February 2008), pp. 201-205.
    by Gregory M Cooper, Christopher D Brown
    posted to genomic conservation comparative by nklee on 2008-04-28 03:31:33 as ** along with 5 people bpcusack aprasad brant djkt xingxu
  • Divergence of Transcription Factor Binding Sites Across Related Yeast Species
    Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819.
    by Anthony R Borneman, Tara A Gianoulis, Zhengdong D Zhang, Haiyuan Yu, Joel Rozowsky, Michael R Seringhaus, Lu Y Wang, Mark Gerstein, Michael Snyder
    posted to yeast divergence by nklee on 2008-04-28 03:31:03 as ** along with 16 people and 2 groups anka aalibes chad_davis dpollard djkt mikaelhuss lusk cjeans sujaikumar zwang GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb EisenLab cis-regulatory-evolution
  • Optimized mixed Markov models for motif identification
    BMC Bioinformatics, Vol. 7 (02 June 2006), 279.
    by Weichun Huang, David M Umbach, Uwe Ohler, Leping Li
    posted to dependency by nklee on 2008-04-22 09:06:51 as ** along with 1 person Ayest
  • How does eukaryotic gene prediction work?
    Nature Biotechnology, Vol. 25, No. 8., pp. 883-885.
    by Michael R Brent
    posted to review by nklee on 2008-04-18 00:35:10 as ** along with 7 people and 3 groups jyuh indigoviolet dchughes wenhan zwang cabbagezs ale EisenLab G4ID Genetics-of-Gambling
  • Nucleosome organization in the Drosophila genome.
    Nature (13 April 2008)
    by Travis N N Mavrich, Cizhong Jiang, Ilya P P Ioshikhes, Xiaoyong Li, Bryan J J Venters, Sara J J Zanton, Lynn P P Tomsho, Ji Qi, Robert L L Glaser, Stephan C C Schuster, David S S Gilmour, Istvan Albert, B Franklin F Pugh
    posted to dropsophila map nucleosome by nklee on 2008-04-16 23:49:26 as ** along with 2 people megraw djkt
  • Are we overestimating the number of cell-cycling genes? The impact of background models on time-series analysis
    Bioinformatics, Vol. 24, No. 8. (15 April 2008), pp. 1063-1069.
    by Matthias E Futschik, Hanspeter Herzel
    posted to microarray noise by nklee on 2008-04-16 23:23:06 as ** along with 1 person bootsy
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