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neils's kinases [55 articles]

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  • Predikin and PredikinDB: a computational framework for the prediction of protein kinase peptide specificity and an associated database of phosphorylation sites
    BMC Bioinformatics, Vol. 9 (26 May 2008), 245.
    by Neil FW Saunders, Ross I Brinkworth, Thomas Huber, Bruce E Kemp, Bostjan Kobe
    posted to substrate specificity predikin prediction kinases bioinformatics by neils on 2008-05-27 05:06:18 as **
  • The Predikin webserver: improved prediction of protein kinase peptide specificity using structural information
    Nucl. Acids Res. (13 May 2008), gkn279.
    by Neil F Saunders, Bostjan Kobe
    posted to webserver specificity predikin prediction peptide kinases bioinformatics by neils on 2008-05-14 03:57:42 as **
  • Mapping the Integrin-Linked Kinase Interactome Using SILAC
    J. Proteome Res. (10 March 2008)
    by Iveta Dobreva, Andrew Fielding, Leonard J Foster, Shoukat Dedhar
    posted to integrin interaction kinases methods proteomics silac by neils on 2008-03-10 06:20:23 as **
  • Activation segment dimerization: a mechanism for kinase autophosphorylation of non-consensus sites
    The EMBO Journal, Vol. aop, No. current. (31 January 2008)
    by Ashley CW Pike, Peter Rellos, Frank H Niesen, Andrew Turnbull, Antony W Oliver, Sirlester A Parker, Benjamin E Turk, Laurence H Pearl, Stefan Knapp
    posted to activation dimerization kinases phosphorylation substrate by neils on 2008-02-02 14:17:02 as **
  • Yeast Polo-like kinase substrates are nailed with the right tools
    Genome Biology, Vol. 9, No. 1. (2008)
    by Vincent Archambault, David Glover
    posted to bioinformatics kinases polo screen specificity substrates yeast by neils on 2008-01-31 00:13:28 as **
  • Charging it up: global analysis of protein phosphorylation.
    Trends Genet (12 August 2006)
    by Jason Ptacek, Michael Snyder
  • MODPROPEP: a program for knowledge-based modeling of protein-peptide complexes.
    Nucleic Acids Res, Vol. 35, No. Web Server issue. (1 July 2007)
    by N Kumar, D Mohanty
    posted to binding complexes kinases mhc peptides protein-protein software webserver by neils on 2008-01-16 02:50:32 as **
  • PI 3-kinase is a dual specificity enzyme: autoregulation by an intrinsic protein-serine kinase activity.
    EMBO J, Vol. 13, No. 3. (1 February 1994), pp. 522-533.
    by R Dhand, I Hiles, G Panayotou, S Roche, MJ Fry, I Gout, NF Totty, O Truong, P Vicendo, K Yonezawa
    posted to kinases p110 p85 phosphorylation pi3k specificity by neils on 2008-01-08 09:43:23 as **
  • Activation loop sequences confer substrate specificity to phosphoinositide 3-kinase alpha (PI3Kalpha ). Functions of lipid kinase-deficient PI3Kalpha in signaling.
    J Biol Chem, Vol. 276, No. 24. (15 June 2001), pp. 21544-21554.
    posted to kinases lipid p110 phosphorylation pi3k by neils on 2008-01-08 09:41:56 as **
  • Lipid kinase and protein kinase activities of G-protein-coupled phosphoinositide 3-kinase gamma: structure-activity analysis and interactions with wortmannin.
    Biochem J, Vol. 324 ( Pt 2) (1 June 1997), pp. 489-495.
    posted to kinases lipid phosphorylation pi3k by neils on 2008-01-08 09:32:38 as **
  • Comparison of the kinetic properties of the lipid- and protein-kinase activities of the p110alpha and p110beta catalytic subunits of class-Ia phosphoinositide 3-kinases.
    Biochem J, Vol. 350 Pt 2 (1 September 2000), pp. 353-359.
    by CA Beeton, EM Chance, LC Foukas, PR Shepherd
    posted to kinases p110 phosphorylation pi3k by neils on 2008-01-08 09:31:10 as **
  • Direct effects of caffeine and theophylline on p110 delta and other phosphoinositide 3-kinases. Differential effects on lipid kinase and protein kinase activities.
    J Biol Chem, Vol. 277, No. 40. (4 October 2002), pp. 37124-37130.
    by LC Foukas, N Daniele, C Ktori, KE Anderson, J Jensen, PR Shepherd
    posted to kinases p110 phosphorylation pi3k by neils on 2008-01-08 09:30:08 as **
  • Autophosphorylation of p110delta phosphoinositide 3-kinase: a new paradigm for the regulation of lipid kinases in vitro and in vivo.
    EMBO J, Vol. 18, No. 5. (1 March 1999), pp. 1292-1302.
    posted to kinases phosphorylation pi3k by neils on 2008-01-08 09:28:25 as **
  • Identification of two eukaryote-like serine/threonine kinases encoded by Chlamydia trachomatis serovar L2 and characterization of interacting partners of Pkn1.
    Infect Immun, Vol. 71, No. 10. (October 2003), pp. 5772-5784.
    by A Verma, AT Maurelli
    posted to bacterial chlamydia kinases phosphorylation pkn1 prokaryotic by neils on 2008-01-08 02:43:31 as **
  • Structural and Functional Diversity of the Microbial Kinome.
    PLoS Biol, Vol. 5, No. 3. (13 March 2007)
    by Natarajan Kannan, Susan S S Taylor, Yufeng Zhai, J Craig C Venter, Gerard Manning
  • Ser/Thr/Tyr protein phosphorylation in bacteria - for long time neglected, now well established.
    J Mol Microbiol Biotechnol, Vol. 9, No. 3-4. (2005), pp. 125-131.
    by J Deutscher, MH Saier
    posted to bacterial kinases phosphorylation by neils on 2008-01-07 03:40:22 as **
  • Fancy meeting you here! A fresh look at "prokaryotic" protein phosphorylation.
    J Bacteriol, Vol. 178, No. 16. (August 1996), pp. 4759-4764.
    by PJ Kennelly, M Potts
    posted to kinases phosphorylation prokaryotic by neils on 2008-01-07 03:39:16 as ** along with 1 person Ema
  • The serine, threonine, and/or tyrosine-specific protein kinases and protein phosphatases of prokaryotic organisms: a family portrait.
    FEMS Microbiol Rev, Vol. 22, No. 4. (October 1998), pp. 229-253.
    by L Shi, M Potts, PJ Kennelly
    posted to kinases kinome prokaryotic by neils on 2008-01-07 03:38:26 as **
  • Complete genome sequence of the myxobacterium Sorangium cellulosum
    Nature Biotechnology, Vol. 25, No. 11. (28 October 2007), pp. 1281-1289.
    by Susanne Schneiker, Olena Perlova, Olaf Kaiser, Klaus Gerth, Aysel Alici, Matthias O Altmeyer, Daniela Bartels, Thomas Bekel, Stefan Beyer, Edna Bode, Helge B Bode, Christoph J Bolten, Jomuna V Choudhuri, Sabrina Doss, Yasser A Elnakady, Bettina Frank, Lars Gaigalat, Alexander Goesmann, Carolin Groeger, Frank Gross, Lars Jelsbak, Lotte Jelsbak, Jörn Kalinowski, Carsten Kegler, Tina Knauber, Sebastian Konietzny, Maren Kopp, Lutz Krause, Daniel Krug, Bukhard Linke, Taifo Mahmud, Rosa Martinez-Arias, Alice C Mchardy, Michelle Merai, Folker Meyer, Sascha Mormann, Jose Muñoz-Dorado, Juana Perez, Silke Pradella, Shwan Rachid, Günter Raddatz, Frank Rosenau, Christian Rückert, Florenz Sasse, Maren Scharfe, Stephan C Schuster, Garret Suen, Anke Treuner-Lange, Gregory J Velicer, Frank-Jörg Vorhölter, Kira J Weissman, Roy D Welch, Silke C Wenzel, David E Whitworth, Susanne Wilhelm, Christoph Wittmann, Helmut Blöcker, Alfred Pühler, Rolf Müller
  • PhosphoregDB: the tissue and sub-cellular distribution of mammalian protein kinases and phosphatases.
    BMC Bioinformatics, Vol. 7 (2006)
    by AR Forrest, DF Taylor, JL Fink, MM Gongora, C Flegg, RD Teasdale, H Suzuki, M Kanamori, C Kai, Y Hayashizaki, SM Grimmond
    posted to database kinases phosphatases phosphorylation by neils on 2007-12-04 12:31:16 as **
  • Protein kinase specificity. A strategic collaboration between kinase peptide specificity and substrate recruitment.
    Cell Cycle, Vol. 4, No. 1. (Jan 2005), pp. 52-56.
    by Guozhi Zhu, Yin Liu, Stephen Shaw
  • GPS: a comprehensive www server for phosphorylation sites prediction.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (Jul 2005), pp. W184-W187.
    by Yu Xue, Fengfeng Zhou, Minjie Zhu, Kashif Ahmed, Guoliang Chen, Xuebiao Yao
  • PPSP: prediction of PK-specific phosphorylation site with Bayesian decision theory.
    BMC Bioinformatics, Vol. 7 (2006)
    by Yu Xue, Ao Li, Lirong Wang, Huanqing Feng, Xuebiao Yao
  • Calcium/calmodulin-dependent protein kinase II (CaMKII) localization acts in concert with substrate targeting to create spatial restriction for phosphorylation.
    J Biol Chem, Vol. 280, No. 10. (Mar 2005), pp. 9210-9216.
    by Jennifer Tsui, Masaki Inagaki, Howard Schulman
  • Centrosomal anchoring of the protein kinase CK1delta mediated by attachment to the large, coiled-coil scaffolding protein CG-NAP/AKAP450.
    J Mol Biol, Vol. 322, No. 4. (Sep 2002), pp. 785-797.
    by James E Sillibourne, Diane M Milne, Mikiko Takahashi, Yoshitaka Ono, David W Meek
  • Phosphorylation of p90 ribosomal S6 kinase (RSK) regulates extracellular signal-regulated kinase docking and RSK activity.
    Mol Cell Biol, Vol. 23, No. 14. (Jul 2003), pp. 4796-4804.
    by Philippe P Roux, Stephanie A Richards, John Blenis
  • Docking interactions in protein kinase and phosphatase networks.
    Curr Opin Struct Biol, Vol. 16, No. 6. (Dec 2006), pp. 676-685.
    by Attila Reményi, Matthew C Good, Wendell A Lim
  • A dimeric kinase assembly underlying autophosphorylation in the p21 activated kinases.
    J Mol Biol, Vol. 361, No. 2. (Aug 2006), pp. 312-326.
    by Michelle Pirruccello, Holger Sondermann, Jeffrey G Pelton, Patricia Pellicena, André Hoelz, Jonathan Chernoff, David E Wemmer, John Kuriyan
  • How do protein kinases recognize their substrates?
    Biochim Biophys Acta, Vol. 1314, No. 3. (Dec 1996), pp. 191-225.
    by LA Pinna, M Ruzzene
  • Protein kinase inhibitors: insights into drug design from structure.
    Science, Vol. 303, No. 5665. (Mar 2004), pp. 1800-1805.
    by Martin EM Noble, Jane A Endicott, Louise N Johnson
  • Systematic discovery of in vivo phosphorylation networks.
    Cell, Vol. 129, No. 7. (Jun 2007), pp. 1415-1426.
    by Rune Linding, Lars J Jensen, Gerard J Ostheimer, Marcel ATM van Vugt, Claus Jørgensen, Ioana M Miron, Francesca Diella, Karen Colwill, Lorne Taylor, Kelly Elder, Pavel Metalnikov, Vivian Nguyen, Adrian Pasculescu, Jing Jin, Jin G Park, Leona D Samson, James R Woodgett, Robert B Russell, Peer Bork, Michael B Yaffe, Tony Pawson
  • Identification of residues which regulate activity of the STE20-related kinase hMINK.
    Biochem Biophys Res Commun, Vol. 300, No. 3. (Jan 2003), pp. 694-698.
    by Jaeseung Lim, Andrew Lennard, Paul W Sheppard, Stuart Kellie
  • The active conformation of the PAK1 kinase domain.
    Structure, Vol. 13, No. 5. (May 2005), pp. 769-778.
    by Ming Lei, Michael A Robinson, Stephen C Harrison
  • Structural modes of stabilization of permissive phosphorylation sites in protein kinases: distinct strategies in Ser/Thr and Tyr kinases.
    J Mol Biol, Vol. 339, No. 5. (Jun 2004), pp. 1025-1039.
  • Substrate specificity of protein kinases and computational prediction of substrates.
    Biochim Biophys Acta, Vol. 1754, No. 1-2. (Dec 2005), pp. 200-209.
    by Bostjan Kobe, Thorsten Kampmann, Jade K Forwood, Pawel Listwan, Ross I Brinkworth
  • Abscisic acid-activated SNRK2 protein kinases function in the gene-regulation pathway of ABA signal transduction by phosphorylating ABA response element-binding factors.
    Plant J, Vol. 44, No. 6. (Dec 2005), pp. 939-949.
    by Yuhko Kobayashi, Michiharu Murata, Hideyuki Minami, Shuhei Yamamoto, Yasuaki Kagaya, Tokunori Hobo, Akiko Yamamoto, Tsukaho Hattori
  • Protein kinases and protein phosphatases in prokaryotes: a genomic perspective.
    FEMS Microbiol Lett, Vol. 206, No. 1. (Jan 2002), pp. 1-8.
    by Peter J Kennelly
  • Archaeal protein kinases and protein phosphatases: insights from genomics and biochemistry.
    Biochem J, Vol. 370, No. Pt 2. (Mar 2003), pp. 373-389.
    by Peter J Kennelly
  • Biochemical characterization of the tobacco 42-kD protein kinase activated by osmotic stress.
    Plant Physiol, Vol. 136, No. 2. (Oct 2004), pp. 3255-3265.
    by Anna Kelner, Izabela Pekala, Szymon Kaczanowski, Grazyna Muszynska, Grahame D Hardie, Grazyna Dobrowolska
  • C-terminal repeat domain kinase I phosphorylates Ser2 and Ser5 of RNA polymerase II C-terminal domain repeats.
    J Biol Chem, Vol. 279, No. 24. (Jun 2004), pp. 24957-24964.
    by Janice C Jones, Hemali P Phatnani, Timothy A Haystead, Justin A Macdonald, Munir S Alam, Arno L Greenleaf
  • Kinomics: methods for deciphering the kinome.
    Nat Methods, Vol. 2, No. 1. (Jan 2005), pp. 17-25.
    by Sam A Johnson, Tony Hunter
  • KinasePhos: a web tool for identifying protein kinase-specific phosphorylation sites.
    Nucleic Acids Res, Vol. 33, No. Web Server issue. (Jul 2005), pp. W226-W229.
    by Hsien Da Huang, Tzong Y Lee, Shih W Tzeng, Jorng T Horng
  • Induction of apoptosis by the Ste20-like kinase SLK, a germinal center kinase that activates apoptosis signal-regulating kinase and p38.
    J Biol Chem, Vol. 281, No. 6. (Feb 2006), pp. 3075-3084.
    by Wen Hao, Tomoko Takano, Julie Guillemette, Joan Papillon, Guohui Ren, Andrey V Cybulsky
  • BRSK2 is activated by cyclic AMP-dependent protein kinase A through phosphorylation at Thr260.
    Biochem Biophys Res Commun, Vol. 347, No. 4. (Sep 2006), pp. 867-871.
    by Zekun Guo, Wenwen Tang, Jian Yuan, Xinya Chen, Bo Wan, Xiuting Gu, Kuntian Luo, Yingli Wang, Long Yu
  • Characterization of cyclin L2, a novel cyclin with an arginine/serine-rich domain: phosphorylation by DYRK1A and colocalization with splicing factors.
    J Biol Chem, Vol. 279, No. 6. (Feb 2004), pp. 4612-4624.
    by Katrin de Graaf, Paul Hekerman, Oliver Spelten, Andreas Herrmann, Len C Packman, Konrad Büssow, Gerhard M Newen, Walter Becker
  • The kinase Grk2 regulates Nedd4/Nedd4-2-dependent control of epithelial Na+ channels.
    Proc Natl Acad Sci U S A, Vol. 101, No. 32. (Aug 2004), pp. 11886-11890.
    by Anuwat Dinudom, Andrew B Fotia, Robert J Lefkowitz, John A Young, Sharad Kumar, David I Cook
  • Phosphorylation of the mitochondrial protein Sab by stress-activated protein kinase 3.
    Biochem Biophys Res Commun, Vol. 319, No. 1. (Jun 2004), pp. 130-137.
    by Naomi W Court, Ivana Kuo, Oonagh Quigley, Marie A Bogoyevitch
  • A kinase sequence database: sequence alignments and family assignment.
    Bioinformatics, Vol. 18, No. 9. (Sep 2002), pp. 1274-1275.
    by Oleksandr Buzko, Kevan M Shokat
  • Protein kinases associated with the yeast phosphoproteome.
    BMC Bioinformatics, Vol. 7 (2006)
    by Ross I Brinkworth, Alan L Munn, Bostjan Kobe
  • Uses for JNK: the many and varied substrates of the c-Jun N-terminal kinases.
    Microbiol Mol Biol Rev, Vol. 70, No. 4. (Dec 2006), pp. 1061-1095.
    by Marie A Bogoyevitch, Bostjan Kobe
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