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nedwards's tandem-mass-spectrometry [135 articles]

当前文献位于 nedwards's 文献库 标签分类为 tandem-mass-spectrometry. You can also see everyone's tandem-mass-spectrometry.
  • Exploring the Precursor Ion Exclusion Feature of Liquid Chromatography−Electrospray Ionization Quadrupole Time-of-Flight Mass Spectrometry for Improving Protein Identification in Shotgun Proteome Analysis
    Anal. Chem., Vol. 80, No. 12. (15 June 2008), pp. 4696-4710.
    by Nan Wang, Liang Li
    posted to tandem-mass-spectrometry proteomics dynamic-exclusion by nedwards on 2008-07-03 21:08:53 as **
  • Recognition of the Carboxy-Terminal Peptide in Cyanogen Bromide Digests of Proteins
    Anal. Chem., Vol. 67, No. 9. (1995), pp. 1644-1645.
    by Constance M Murphy, Catherine Fenselau
    posted to tandem-mass-spectrometry proteomics c-terminal-peptides by nedwards on 2008-07-03 20:57:51 as **
  • Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sites
    Nature Biotechnology, Vol. 26, No. 6. (25 May 2008), pp. 685-694.
    by Oliver Schilling, Christopher M Overall
    posted to tandem-mass-spectrometry proteomics n-terminal-peptides by nedwards on 2008-07-03 20:48:14 as ** along with 1 person brianb
  • Proteases' prime targets revealed
    Nature Biotechnology, Vol. 26, No. 6., pp. 652-653.
    by Scott L Diamond, Doron Greenbaum
    posted to tandem-mass-spectrometry proteomics n-terminal-peptides by nedwards on 2008-07-03 20:47:24 as **
  • Exponentially Modified Protein Abundance Index (emPAI) for Estimation of Absolute Protein Amount in Proteomics by the Number of Sequenced Peptides per Protein
    Mol Cell Proteomics, Vol. 4, No. 9. (1 September 2005), pp. 1265-1272.
    by Yasushi Ishihama, Yoshiya Oda, Tsuyoshi Tabata, Toshitaka Sato, Takeshi Nagasu, Juri Rappsilber, Matthias Mann
    posted to tandem-mass-spectrometry proteomics protein-quantitation-statistics protein-quantitation by nedwards on 2008-06-09 15:04:19 as **
  • Isoform Analysis of LC−MS/MS Data from Multidimensional Fractionation of the Serum Proteome
    J. Proteome Res. (18 April 2008)
    by Alexei L Krasnoselsky, Vitor M Faca, Sharon J Pitteri, Qing Zhang, Samir M Hanash
    posted to tandem-mass-spectrometry proteomics protein-isoforms by nedwards on 2008-04-25 15:58:47 as **
  • Linear Discriminant Analysis-Based Estimation of the False Discovery Rate for Phosphopeptide Identifications
    J. Proteome Res. (19 April 2008)
    by Xiuxia Du, Feng Yang, Nathan P Manes, David L Stenoien, Matthew E Monroe, Joshua N Adkins, David J States, Samuel O Purvine, Ii Camp, Richard D Smith
    posted to tandem-mass-spectrometry proteomics phosphorylation phosphopeptide peptide-identification-statistics by nedwards on 2008-04-25 15:56:45 as ** along with 2 people neils brianb
  • RAId DbS: Peptide Identification using Database Searches with Realistic Statistics
    Biology Direct, Vol. 2 (25 October 2007), 25.
    by Gelio Alves, Aleksey Y Ogurtsov, Yi-Kuo Yu
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-04-02 19:39:57 as **
  • Calibrating E-values for MS2 database search methods
    Biology Direct, Vol. 2 (05 November 2007), 26.
    by Gelio Alves, Aleksey Y Ogurtsov, Wells W Wu, Guanghui Wang, Rong-Fong Shen, Yi-Kuo Yu
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-04-02 19:37:35 as **
  • Online Microwave D-Cleavage LC-ESI-MS/MS of Intact Proteins: Site-Specific Cleavages at Aspartic Acid Residues and Disulfide Bonds
    J. Proteome Res., Vol. 7, No. 3. (7 March 2008), pp. 1012-1026.
    by Nicolas J Hauser, Franco Basile
    posted to acid-cleavage proteomics tandem-mass-spectrometry by nedwards on 2008-03-24 18:44:55 as **
  • Semisupervised model-based validation of Peptide identifications in mass spectrometry-based proteomics.
    J Proteome Res, Vol. 7, No. 1. (January 2008), pp. 254-265.
    by H Choi, AI Nesvizhskii
    posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-02-01 18:47:35 as ** along with 1 person jyuh
  • Improving Sensitivity by Probabilistically Combining Results from Multiple MS/MS Search Methodologies
    J. Proteome Res., Vol. 7, No. 1. (4 January 2008), pp. 245-253.
    by Brian C Searle, Mark Turner, Alexey I Nesvizhskii
    posted to machine-learning peptide-identification peptide-identification-combiners proteomics tandem-mass-spectrometry by nedwards on 2008-02-01 18:43:14 as **
  • Semi-supervised learning for peptide identification from shotgun proteomics datasets
    Nature Methods, Vol. 4, No. 11. (21 October 2007), pp. 923-925.
    by Lukas Käll, Jesse D Canterbury, Jason Weston, William S Noble, Michael J Maccoss
    posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-01-31 20:55:27 as ** along with 1 person tmmurali
  • De Novo Peptide Identification via Tandem Mass Spectrometry and Integer Linear Optimization
    Anal. Chem., Vol. 79, No. 4. (15 February 2007), pp. 1433-1446.
    by PA Dimaggio, CA Floudas
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-01-03 21:02:10 as **
  • Error tolerant searching of uninterpreted tandem mass spectrometry data
    PROTEOMICS, Vol. 2, No. 10. (2002), pp. 1426-1434.
    by David M Creasy, John S Cottrell
    posted to mascot peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-01-03 21:01:12 as **
  • Robust accurate identification of peptides (RAId): deciphering MS2 data using a structured library search with de novo based statistics
    Bioinformatics, Vol. 21, No. 19. (1 October 2005), pp. 3726-3732.
    by Gelio Alves, Yi-Kuo Yu
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-01-03 20:53:55 as **
  • Optimal Construction of Theoretical Spectra for MS/MS Spectra Identification
    OMICS: A Journal of Integrative Biology, Vol. 9, No. 4. (2005), pp. 380-390.
    by Tema Fridman, Vladimir Protopopescu, Greg Hurst, Andrei Borziak, Andrey Gorin
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-12-31 14:42:10 as **
  • Spectral Quality Assessment for High-Throughput Tandem Mass Spectrometry Proteomics
    OMICS: A Journal of Integrative Biology, Vol. 8, No. 3. (2004), pp. 255-265.
    by Samuel Purvine, Natali Kolker, Eugene Kolker
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-12-31 14:39:03 as **
  • Standard Mixtures for Proteome Studies
    OMICS: A Journal of Integrative Biology, Vol. 8, No. 1. (2004), pp. 79-92.
    by Samuel Purvine, Alex F Picone, Eugene Kolker
    posted to proteoimcs proteomics-data tandem-mass-spectrometry by nedwards on 2007-12-31 14:35:26 as **
  • Algorithms for Identifying Protein Cross-Links via Tandem Mass Spectrometry
    Journal of Computational Biology, Vol. 8, No. 6. (2001), pp. 571-583.
    by Ting Chen, Jacob D Jaffe, George M Church
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-12-31 14:29:53 as **
  • HMMatch: Peptide Identification by Spectral Matching of Tandem Mass Spectra Using Hidden Markov Models
    Journal of Computational Biology, Vol. 14, No. 8. (2007), pp. 1025-1043.
    by Xue Wu, Chau-Wen Tseng, Nathan Edwards
    posted to peptide-identification peptide-identification-statistics proteomics spectral-matching tandem-mass-spectrometry by nedwards on 2007-12-31 14:21:47 as ** along with 1 person jyuh
  • Generating Peptide Candidates from Amino-Acid Sequence Databases for Protein Identification via Mass Spectrometry
    Algorithms in Bioinformatics: Second International Workshop, WABI 2002, Rome, Italy, September 17-21, 2002. Proceedings (2002), pp. 68-81.
    by Nathan Edwards, Ross Lippert
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-12-10 16:29:41 as **
  • PepNovo: De Novo Peptide Sequencing via Probabilistic Network Modeling
    Anal. Chem., Vol. 77, No. 4. (15 February 2005), pp. 964-973.
    by A Frank, P Pevzner
    posted to denovo-interpretation peptide-identification peptide-spectrum-score proteomics tandem-mass-spectrometry by nedwards on 2007-11-07 21:13:46 as **
  • Analysis and validation of proteomic data generated by tandem mass spectrometry
    Nat Meth, Vol. 4, No. 10. (October 2007), pp. 787-797.
    by Alexey Nesvizhskii, Olga Vitek, Ruedi Aebersold
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-11-07 16:03:29 as ** along with 2 people jyuh fishtank
  • Positional proteomics: preparation of amino-terminal peptides as a strategy for proteome simplification and characterization.
    Nat Protoc, Vol. 1, No. 4. (2006), pp. 1790-1798.
    by L McDonald, RJ Beynon
    posted to genome-annotation n-terminal-peptides proteomics tandem-mass-spectrometry by nedwards on 2007-10-30 15:17:02 as **
  • A proteomics approach to understanding protein ubiquitination
    Nat Biotech, Vol. 21, No. 8. (2003), pp. 921-926.
    by Junmin Peng, Daniel Schwartz, Joshua E Elias, Carson C Thoreen, Dongmei Cheng, Gerald Marsischky, Jeroen Roelofs, Daniel Finley, Steven P Gygi
    posted to proteomics tandem-mass-spectrometry ubiquitination by nedwards on 2007-10-18 19:39:29 as ** along with 1 person Garth_9145
  • Mass spectrometry and the age of the proteome
    Journal of Mass Spectrometry, Vol. 33, No. 1. (1998), pp. 1-19.
    by John R Yates
    posted to peptide-identification proteomics shotgun tandem-mass-spectrometry by nedwards on 2007-10-18 17:33:29 as **
  • ProbIDtree: An automated software program capable of identifying multiple peptides from a single collision-induced dissociation spectrum collected by a tandem mass spectrometer
    PROTEOMICS, Vol. 5, No. 16. (2005), pp. 4096-4106.
    by Ning Zhang, Xiao-Jun Li, Mingliang Ye, Sheng Pan, Benno Schwikowski, Ruedi Aebersold
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:39:40 as ** along with 1 person olberd
  • Intensity-Based Statistical Scorer for Tandem Mass Spectrometry
    Anal. Chem., Vol. 75, No. 3. (1 February 2003), pp. 435-444.
    by M Havilio, Y Haddad, Z Smilansky
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:37:53 as **
  • Comparison of probability and likelihood models for peptide identification from tandem mass spectrometry data.
    J Proteome Res, Vol. 4, No. 5. (t 2005), pp. 1687-1698.
    by WR Cannon, KH Jarman, BJ Webb-Robertson, DJ Baxter, CS Oehmen, KD Jarman, A Heredia-Langner, KJ Auberry, GA Anderson
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:22:15 as **
  • High-performance peptide identification by tandem mass spectrometry allows reliable automatic data processing in proteomics.
    Proteomics, Vol. 4, No. 7. (July 2004), pp. 1977-1984.
    by J Colinge, A Masselot, I Cusin, E Mahé, A Niknejad, G Argoud-Puy, S Reffas, N Bederr, A Gleizes, PA Rey, L Bougueleret
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:21:46 as **
  • OLAV: towards high-throughput tandem mass spectrometry data identification.
    Proteomics, Vol. 3, No. 8. (August 2003), pp. 1454-1463.
    by J Colinge, A Masselot, M Giron, T Dessingy, J Magnin
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:21:22 as **
  • A Statistical Basis for Testing the Significance of Mass Spectrometric Protein Identification Results
    Anal. Chem., Vol. 72, No. 5. (1 March 2000), pp. 999-1005.
    by J Eriksson, BT Chait, D Fenyo
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:19:03 as **
  • ProbID: A probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data
    PROTEOMICS, Vol. 2, No. 10. (2002), pp. 1406-1412.
    by Ning Zhang, Ruedi Aebersold, Benno Schwikowski
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:14:05 as **
  • A Hypergeometric Probability Model for Protein Identification and Validation Using Tandem Mass Spectral Data and Protein Sequence Databases
    Anal. Chem., Vol. 75, No. 15. (1 August 2003), pp. 3792-3798.
    by RG Sadygov, JR Yates
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-11 18:57:40 as **
  • Prediction of Error Associated with False-Positive Rate Determination for Peptide Identification in Large-Scale Proteomics Experiments Using a Combined Reverse and Forward Peptide Sequence Database Strategy
    J. Proteome Res., Vol. 6, No. 1. (5 January 2007), pp. 392-398.
    by EL Huttlin, AD Hegeman, AC Harms, MR Sussman
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-11 18:51:56 as **
  • De Novo peptide sequencing via tandem mass spectrometry: a graph-theoretical approach
    (1999), pp. 135-144.
    by Vlado Dancik, Theresa A Addona, Karl R Clauser, James E Vath, Pavel A Pevzner
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-10-10 19:55:35 as **
  • Selective Isolation of N-Blocked Peptides by Isocyanate-Coupled Resin
    Anal. Chem. (14 September 2007)
    by T Mikami, T Takao
    posted to genome-annotation n-terminal-peptides peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-09-21 13:45:34 as **
  • Artificial Neural Network Analysis for Evaluation of Peptide MS/MS Spectra in Proteomics
    Anal. Chem., Vol. 76, No. 6. (15 March 2004), pp. 1726-1732.
    by T Baczek, A Bucinski, AR Ivanov, R Kaliszan
    posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-09-20 18:12:53 as **
  • Empirical Statistical Model To Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search
    Anal. Chem., Vol. 74, No. 20. (15 October 2002), pp. 5383-5392.
    by A Keller, AI Nesvizhskii, E Kolker, R Aebersold
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-09-19 18:47:39 as **
  • Comprehensive yeast proteome analysis using a capillary isoelectric focusing-based multidimensional separation platform coupled with ESI-MS/MS
    PROTEOMICS, Vol. 7, No. 8. (2007), pp. 1178-1187.
    by Weijie Wang, Tong Guo, Tao Song, Cheng S Lee, Brian M Balgley
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-09-13 20:29:28 as **
  • Comparative Evaluation of Tandem MS Search Algorithms Using a Target-Decoy Search Strategy
    Mol Cell Proteomics, Vol. 6, No. 9. (1 September 2007), pp. 1599-1608.
    by Brian M Balgley, Tom Laudeman, Li Yang, Tao Song, Cheng S Lee
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-09-13 20:17:07 as **
  • A fast coarse filtering method for peptide identification by mass spectrometry
    Bioinformatics, Vol. 22, No. 12. (15 June 2006), pp. 1524-1531.
    by Smriti R Ramakrishnan, Rui Mao, Aleksey A Nakorchevskiy, John T Prince, Willard S Willard, Weijia Xu, Edward M Marcotte, Daniel P Miranker
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-09-05 16:13:35 as **
  • Achieving in-depth proteomics profiling by mass spectrometry.
    ACS Chem Biol, Vol. 2, No. 1. (23 January 2007), pp. 39-52.
    by NG Ahn, JB Shabb, WM Old, KA Resing
    posted to mass-spectrometry peptide-identification protein-quantitation proteomics tandem-mass-spectrometry by nedwards on 2007-09-05 16:05:40 as ** along with 1 person jyuh
  • Prediction of Low-Energy Collision-Induced Dissociation Spectra of Peptides with Three or More Charges
    Anal. Chem., Vol. 77, No. 19. (1 October 2005), pp. 6364-6373.
    by Z Zhang
    posted to denovo-interpretation peptide-identification tandem-mass-spectrometry proteomics by nedwards on 2007-09-05 16:02:25 as **
  • Estimating the Statistical Significance of Peptide Identifications from Shotgun Proteomics Experiments
    J. Proteome Res., Vol. 6, No. 5. (4 May 2007), pp. 1758-1767.
    by RE Higgs, MD Knierman, A Bonnerfreeman, LM Gelbert, ST Patil, JE Hale
    posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-09-04 18:56:09 as **
  • A dynamic programming approach to de novo peptide sequencing via tandem mass spectrometry
    (2000), pp. 389-398.
    by Ting Chen, Ming-Yang Kao, Matthew Tepel, John Rush, George M Church
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 20:36:21 as ** along with 1 person antoniochiao
  • Searching sequence databases via de novo peptide sequencing by tandem mass spectrometry.
    Mol Biotechnol, Vol. 22, No. 3. (November 2002), pp. 301-315.
    by RS Johnson, JA Taylor
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:37:05 as **
  • Sequence optimization as an alternative to de novo analysis of tandem mass spectrometry data.
    Bioinformatics, Vol. 20, No. 14. (22 September 2004), pp. 2296-2304.
    by A Heredia-Langner, WR Cannon, KD Jarman, KH Jarman
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:36:44 as **
  • Robust accurate identification of peptides (RAId): deciphering MS2 data using a structured library search with de novo based statistics.
    Bioinformatics, Vol. 21, No. 19. (1 October 2005), pp. 3726-3732.
    by G Alves, YK Yu
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:36:24 as **
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