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nedwards's systems-biology [32 articles]

当前文献位于 nedwards's 文献库 标签分类为 systems-biology. You can also see everyone's systems-biology.
  • A Biological Atlas of Functional Maps
    Cell, Vol. 104, No. 3. (9 February 2001), pp. 333-339.
    by Marc Vidal
    posted to systems-biology by nedwards on 2008-05-09 16:52:32 as ** along with 1 person mingzhi
  • Hierarchical structure and the prediction of missing links in networks
    Nature, Vol. 453, No. 7191., pp. 98-101.
    by Aaron Clauset, Cristopher Moore, MEJ Newman
    posted to systems-biology protein-protein-interactions by nedwards on 2008-05-09 16:38:15 as ** along with 24 people pbull jago Ema gtgt15 hryk i-stevenson pinney elsantosneto markusd eyliu craigwilson06 jyuh margaritis gagliol bryanhughes akshat tmmurali cactus AbnerCYH tny briordan deanmalmgren soramame_0518 jjray
  • Coexpression analysis of human genes across many microarray data sets.
    Genome Res, Vol. 14, No. 6. (June 2004), pp. 1085-1094.
    by HK Lee, AK Hsu, J Sajdak, J Qin, P Pavlidis
    posted to systems-biology gene-expression data-integration by nedwards on 2008-05-09 16:37:35 as ** along with 11 people and 2 groups jo_davies maryee gpalidwor giovanni jeremymiller hawkeyehammer grahamc macavity1g raylim sgoetz wilbur GeschwindLab Indigene
  • GeneRank: Using search engine technology for the analysis of microarray experiments
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Julie Morrison, Rainer Breitling, Desmond Higham, David Gilbert
    posted to systems-biology gene-expression data-integration by nedwards on 2008-05-09 15:12:53 as ** along with 1 person jiny
  • CGI: a new approach for prioritizing genes by combining gene expression and proteinprotein interaction data
    Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 215-221.
    by Ma, Xiaotu, Lee, Hyunju, Sun, Fengzhu
    posted to systems-biology gene-expression data-integration by nedwards on 2008-05-08 14:07:28 as ** along with 1 person jiny
  • Relating whole-genome expression data with protein-protein interactions.
    Genome Res, Vol. 12, No. 1. (January 2002), pp. 37-46.
    by R Jansen, D Greenbaum, M Gerstein
    posted to systems-biology gene-expression data-integration by nedwards on 2008-05-08 14:06:02 as ** along with 6 people gurkanbebek gespim grahamc cjeans iris_2001 kintoki
  • Dependence network modeling for biomarker identification
    Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 198-206.
    by Qiu, Peng, Wang, Z Jane, Liu, KJ Ray, Hu, Zhang-Zhi, Wu, H Cathy
    posted to systems-biology by nedwards on 2008-05-02 15:12:02 as **
  • Ensemble dependence model for classification and prediction of cancer and normal gene expression data
    Bioinformatics, Vol. 21, No. 14. (15 July 2005), pp. 3114-3121.
    by Peng Qiu, Jane Z Wang, Ray KJ Liu
    posted to systems-biology correlation by nedwards on 2008-05-02 14:56:33 as **
  • Gene expression profiling predicts clinical outcome of breast cancer.
    Nature, Vol. 415, No. 6871. (31 January 2002), pp. 530-536.
    by LJ van 't Veer, H Dai, MJ van de Vijver, YD He, AA Hart, M Mao, HL Peterse, K van der Kooy, MJ Marton, AT Witteveen, GJ Schreiber, RM Kerkhoven, C Roberts, PS Linsley, R Bernards, SH Friend
    posted to systems-biology gene-expression data-integration breast-cancer by nedwards on 2008-04-29 18:26:04 as ** along with 12 people and 1 group jo_davies jfr tuck bedo giovanni frohike Ao_Li2007 lyndon macavity1g winterschlaefer Lara waghsk GeschwindLab
  • The Gene Expression Response of Breast Cancer to Growth Regulators: Patterns and Correlation with Tumor Expression Profiles
    Cancer Res, Vol. 63, No. 21. (1 November 2003), pp. 7158-7166.
    by Heather E Cunliffe, Markus Ringner, Sven Bilke, Robert L Walker, Jennifer M Cheung, Yidong Chen, Paul S Meltzer
    posted to systems-biology gene-expression data-integration breast-cancer by nedwards on 2008-04-29 18:24:39 as **
  • A statistical framework for genomic data fusion.
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2626-2635.
    by GR Lanckriet, TD De Bie, N Cristianini, MI Jordan, WS Noble
    posted to data-integration heterogeneous-data-sources systems-biology by nedwards on 2008-04-17 16:52:51 as ** along with 3 people tmmurali jfr mbeautru
  • A data integration methodology for systems biology.
    Proc Natl Acad Sci U S A (21 November 2005)
    by Daehee Hwang, Alistair G G Rust, Stephen Ramsey, Jennifer J J Smith, Deena M M Leslie, Andrea D D Weston, Pedro de Atauri, John D D Aitchison, Leroy Hood, Andrew F F Siegel, Hamid Bolouri
    posted to data-integration heterogeneous-data-sources systems-biology by nedwards on 2008-04-17 16:52:24 as ** along with 17 people and 3 groups brian tmmurali dragonrez okarsligil jfr lfriedl Schmidtc eweaver wnpx biosv Sharpshoot noano mbeautru reidy grahamc GeeSharpMinor athleem kdl Bioinformatics JJJ
  • A data integration methodology for systems biology: Experimental verification
    PNAS, Vol. 102, No. 48. (29 November 2005), pp. 17302-17307.
    by Daehee Hwang, Jennifer J Smith, Deena M Leslie, Andrea D Weston, Alistair G Rust, Stephen Ramsey, Pedro de Atauri, Andrew F Siegel, Hamid Bolouri, John D Aitchison, Leroy Hood
    posted to data-integration heterogeneous-data-sources systems-biology by nedwards on 2008-04-17 16:51:56 as ** along with 10 people and 2 groups Retchless tmmurali dragonrez okarsligil lfriedl lyongu eweaver wnpx mbeautru GeeSharpMinor kdl Bioinformatics
  • Evaluation and integration of 49 genome-wide experiments and the prediction of previously unknown obesity-related genes
    Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2910-2917.
    by Sangeeta B English, Atul J Butte
    posted to data-integration heterogeneous-data-sources systems-biology by nedwards on 2008-04-17 16:50:45 as ** along with 3 people tmmurali jfr barriot
  • Protein networks in disease
    Genome Res., Vol. 18, No. 4. (1 April 2008), pp. 644-652.
    by Trey Ideker, Roded Sharan
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-16 19:18:04 as ** along with 13 people jfr thomaskelder gracio schuylrp jyuh tmmurali Borelli jwdietrich frohike bootsy roys mclarenv phoenixzxl
  • Protein-protein interaction networks and biology—what's the connection?
    Nature Biotechnology, Vol. 26, No. 1., pp. 69-72.
    by Luke Hakes, John W Pinney, David L Robertson, Simon C Lovell
    posted to protein-protein-interactions systems-biology by nedwards on 2008-04-16 14:50:00 as ** along with 13 people and 1 group Yanno jyuh tmmurali jfr balicea dullhunk neils mikaelhuss cjeans biehl shikin mclarenv Yumyai GeneGo
  • A Bayesian networks approach for predicting protein-protein interactions from genomic data.
    Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453.
    by R Jansen, H Yu, D Greenbaum, Y Kluger, NJ Krogan, S Chung, A Emili, M Snyder, JF Greenblatt, M Gerstein
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-16 13:54:41 as ** along with 16 people and 2 groups lfriedl balajis opheliav yuval wnpx nickluscombe ruvido raiyar massivemayhem kdang dbgrant karfunkel Evangelia shung phoenixzxl penpen926 kdl EBI-regulation
  • Integrated Protein Interaction Networks for 11 Microbes
    : Research in Computational Molecular Biology (2006), pp. 1-14.
    by Balaji S Srinivasan, Antal F Novak, Jason A Flannick, Serafim Batzoglou, Harley H Mcadams
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-16 13:51:52 as ** along with 1 person balajis
  • Functional genome annotation through phylogenomic mapping
    Nature Biotechnology, Vol. 23, No. 6. (06 June 2005), pp. 691-698.
    by Balaji S Srinivasan, Nora B Caberoy, Garret Suen, Rion G Taylor, Radhika Shah, Farah Tengra, Barry S Goldman, Anthony G Garza, Roy D Welch
    posted to protein-protein-interactions systems-biology by nedwards on 2008-04-16 13:48:22 as ** along with 10 people and 1 group operon setar tmmurali pggm aprasad balajis nuke2005 lyongu blobbybirdman kroos Myxo group
  • IntNetDB v1.0: An integrated protein-protein interaction network database generated by a probabilistic model
    BMC Bioinformatics, Vol. 7 (18 November 2006), 508.
    by Kai Xia, Dong Dong, Jing-Dong J Han
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-16 13:43:44 as ** along with 3 people wnpx cdallett maralena
  • Predicting co-complexed protein pairs using genomic and proteomic data integration.
    BMC Bioinformatics, Vol. 5 (16 April 2004)
    by LV Zhang, SL Wong, OD King, FP Roth
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-16 13:41:55 as ** along with 2 people and 1 group lfriedl reidy kdl
  • Assessing the limits of genomic data integration for predicting protein networks.
    Genome Res, Vol. 15, No. 7. (July 2005), pp. 945-953.
    by LJ Lu, Y Xia, A Paccanaro, H Yu, M Gerstein
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-16 13:39:56 as ** along with 10 people and 2 groups iris_2001 okarsligil lfriedl balajis maryee opheliav wnpx mbeautru eukfn grahamc kdl Bioinformatics
  • Network modeling links breast cancer susceptibility and centrosome dysfunction.
    Nat Genet (7 October 2007)
    by Miguel Angel A Pujana, Jing-Dong J D Han, Lea M M Starita, Kristen N N Stevens, Muneesh Tewari, Jin Sook S Ahn, Gad Rennert, Víctor Moreno, Tomas Kirchhoff, Bert Gold, Volker Assmann, Wael M M Elshamy, Jean-François F Rual, Douglas Levine, Laura S S Rozek, Rebecca S S Gelman, Kristin C C Gunsalus, Roger A A Greenberg, Bijan Sobhian, Nicolas Bertin, Kavitha Venkatesan, Nono Ayivi-Guedehoussou, Xavier Solé, Pilar Hernández, Conxi Lázaro, Katherine L L Nathanson, Barbara L L Weber, Michael E E Cusick, David E E Hill, Kenneth Offit, David M M Livingston, Stephen B B Gruber, Jeffrey D D Parvin, Marc Vidal
    posted to heterogeneous-data-sources systems-biology by nedwards on 2008-04-16 13:37:14 as ** along with 5 people and 1 group jfr ealloza cjeans jdiezperezj phoenixzxl BioinfoCIPF
  • A framework of integrating gene relations from heterogeneous data sources: an experiment on Arabidopsis thaliana.
    Bioinformatics, Vol. 22, No. 16. (15 August 2006), pp. 2037-2043.
    by J Li, X Li, H Su, H Chen, DW Galbraith
    posted to heterogeneous-data-sources systems-biology by nedwards on 2008-04-10 17:50:31 as ** along with 2 people jyuh balajis
  • A thematic review series: systems biology approaches to metabolic and cardiovascular disorders
    J. Lipid Res., Vol. 47, No. 9. (1 September 2006), pp. 1887-1890.
    by Aldons J Lusis
    posted to metabolomics systems-biology by nedwards on 2008-04-10 17:49:59 as **
  • Context-sensitive data integration and prediction of biological networks
    Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2322-2330.
    by Chad L Myers, Olga G Troyanskaya
    posted to heterogeneous-data-sources systems-biology by nedwards on 2008-04-10 17:48:56 as ** along with 6 people jyuh tmmurali rdiaz grahamc iris_2001 shung
  • Current progress in network research: toward reference networks for key model organisms.
    Brief Bioinform (29 August 2007)
    by Balaji S S Srinivasan, Nigam H H Shah, Jason A A Flannick, Eduardo Abeliuk, Antal F F Novak, Serafim Batzoglou
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-10 17:46:46 as ** along with 3 people and 1 group jyuh grahamc roys Bioinformatics
  • Beyond the 'best' match: machine learning annotation of protein sequences by integration of different sources of information
    Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 621-628.
    by Igor V Tetko, Igor V Rodchenkov, Mathias C Walter, Thomas Rattei, Hans-Werner Mewes
    posted to heterogeneous-data-sources systems-biology by nedwards on 2008-04-10 17:44:42 as ** along with 1 person gongScience
  • Whole-genome annotation by using evidence integration in functional-linkage networks.
    Proc Natl Acad Sci U S A, Vol. 101, No. 9. (2 March 2004), pp. 2888-2893.
    by U Karaoz, TM Murali, S Letovsky, Y Zheng, C Ding, CR Cantor, S Kasif
    posted to systems-biology by nedwards on 2008-04-10 17:43:26 as ** along with 2 people and 1 group shivaram lfriedl kdl
  • Significance analysis of functional categories in gene expression studies: a structured permutation approach
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1943-1949.
    by William T Barry, Andrew B Nobel, Fred A Wright
    posted to statistical-significance systems-biology by nedwards on 2008-04-10 17:42:24 as ** along with 3 people and 1 group ealloza jdiggans heliopais BioinfoCIPF
  • Getting connected: analysis and principles of biological networks.
    Genes Dev, Vol. 21, No. 9. (1 May 2007), pp. 1010-1024.
    by X Zhu, M Gerstein, M Snyder
    posted to systems-biology by nedwards on 2008-04-10 17:41:26 as ** along with 7 people jfr balajis grahamc fishtank naegele Evangelia kristen
  • A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae).
    Proc Natl Acad Sci U S A, Vol. 100, No. 14. (8 July 2003), pp. 8348-8353.
    by OG Troyanskaya, K Dolinski, AB Owen, RB Altman, D Botstein
    posted to heterogeneous-data-sources systems-biology by nedwards on 2008-04-10 17:39:32 as ** along with 12 people and 2 groups BioGeek serak dragonrez okarsligil lfriedl balajis eckart_bindewald eweaver luispedro opheliav wnpx Evangelia kdl Bioinformatics
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