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nedwards's peptide-identification [122 articles]

当前文献位于 nedwards's 文献库 标签分类为 peptide-identification. You can also see everyone's peptide-identification.
  • Increasing information from shotgun proteomic data by accounting for misassigned precursor ion masses
    PROTEOMICS, Vol. 8, No. 14. (2008), pp. 2791-2797.
    by Alexander Scherl, Yihsuan S Tsai, Scott A Shaffer, David R Goodlett
    posted to tandem-mass-spectrometry proteomics peptide-identification by nedwards on 2008-08-28 22:10:25 as ** along with 1 person brianb
  • RAId DbS: Peptide Identification using Database Searches with Realistic Statistics
    Biology Direct, Vol. 2 (25 October 2007), 25.
    by Gelio Alves, Aleksey Y Ogurtsov, Yi-Kuo Yu
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-04-02 19:39:57 as **
  • Calibrating E-values for MS2 database search methods
    Biology Direct, Vol. 2 (05 November 2007), 26.
    by Gelio Alves, Aleksey Y Ogurtsov, Wells W Wu, Guanghui Wang, Rong-Fong Shen, Yi-Kuo Yu
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-04-02 19:37:35 as ** along with 1 person brianb
  • Semisupervised model-based validation of Peptide identifications in mass spectrometry-based proteomics.
    J Proteome Res, Vol. 7, No. 1. (January 2008), pp. 254-265.
    by H Choi, AI Nesvizhskii
    posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-02-01 18:47:35 as ** along with 1 person jyuh
  • Improving Sensitivity by Probabilistically Combining Results from Multiple MS/MS Search Methodologies
    J. Proteome Res., Vol. 7, No. 1. (4 January 2008), pp. 245-253.
    by Brian C Searle, Mark Turner, Alexey I Nesvizhskii
    posted to machine-learning peptide-identification peptide-identification-combiners proteomics tandem-mass-spectrometry by nedwards on 2008-02-01 18:43:14 as **
  • Semi-supervised learning for peptide identification from shotgun proteomics datasets
    Nature Methods, Vol. 4, No. 11. (21 October 2007), pp. 923-925.
    by Lukas Käll, Jesse D Canterbury, Jason Weston, William S Noble, Michael J Maccoss
    posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-01-31 20:55:27 as ** along with 1 person tmmurali
  • De Novo Peptide Identification via Tandem Mass Spectrometry and Integer Linear Optimization
    Anal. Chem., Vol. 79, No. 4. (15 February 2007), pp. 1433-1446.
    by PA Dimaggio, CA Floudas
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-01-03 21:02:10 as **
  • Error tolerant searching of uninterpreted tandem mass spectrometry data
    PROTEOMICS, Vol. 2, No. 10. (2002), pp. 1426-1434.
    by David M Creasy, John S Cottrell
    posted to mascot peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-01-03 21:01:12 as **
  • Robust accurate identification of peptides (RAId): deciphering MS2 data using a structured library search with de novo based statistics
    Bioinformatics, Vol. 21, No. 19. (1 October 2005), pp. 3726-3732.
    by Gelio Alves, Yi-Kuo Yu
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-01-03 20:53:55 as **
  • Optimal Construction of Theoretical Spectra for MS/MS Spectra Identification
    OMICS: A Journal of Integrative Biology, Vol. 9, No. 4. (2005), pp. 380-390.
    by Tema Fridman, Vladimir Protopopescu, Greg Hurst, Andrei Borziak, Andrey Gorin
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-12-31 14:42:10 as **
  • Spectral Quality Assessment for High-Throughput Tandem Mass Spectrometry Proteomics
    OMICS: A Journal of Integrative Biology, Vol. 8, No. 3. (2004), pp. 255-265.
    by Samuel Purvine, Natali Kolker, Eugene Kolker
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-12-31 14:39:03 as **
  • Algorithms for Identifying Protein Cross-Links via Tandem Mass Spectrometry
    Journal of Computational Biology, Vol. 8, No. 6. (2001), pp. 571-583.
    by Ting Chen, Jacob D Jaffe, George M Church
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-12-31 14:29:53 as **
  • HMMatch: Peptide Identification by Spectral Matching of Tandem Mass Spectra Using Hidden Markov Models
    Journal of Computational Biology, Vol. 14, No. 8. (2007), pp. 1025-1043.
    by Xue Wu, Chau-Wen Tseng, Nathan Edwards
    posted to peptide-identification peptide-identification-statistics proteomics spectral-matching tandem-mass-spectrometry by nedwards on 2007-12-31 14:21:47 as ** along with 1 person jyuh
  • Generating Peptide Candidates from Amino-Acid Sequence Databases for Protein Identification via Mass Spectrometry
    Algorithms in Bioinformatics: Second International Workshop, WABI 2002, Rome, Italy, September 17-21, 2002. Proceedings (2002), pp. 68-81.
    by Nathan Edwards, Ross Lippert
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-12-10 16:29:41 as **
  • PepNovo: De Novo Peptide Sequencing via Probabilistic Network Modeling
    Anal. Chem., Vol. 77, No. 4. (15 February 2005), pp. 964-973.
    by A Frank, P Pevzner
    posted to denovo-interpretation peptide-identification peptide-spectrum-score proteomics tandem-mass-spectrometry by nedwards on 2007-11-07 21:13:46 as **
  • Analysis and validation of proteomic data generated by tandem mass spectrometry
    Nat Meth, Vol. 4, No. 10. (October 2007), pp. 787-797.
    by Alexey Nesvizhskii, Olga Vitek, Ruedi Aebersold
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-11-07 16:03:29 as ** along with 2 people jyuh fishtank
  • Mass spectrometry and the age of the proteome
    Journal of Mass Spectrometry, Vol. 33, No. 1. (1998), pp. 1-19.
    by John R Yates
    posted to peptide-identification proteomics shotgun tandem-mass-spectrometry by nedwards on 2007-10-18 17:33:29 as **
  • Large Scale Protein Profiling by Combination of Protein Fractionation and Multidimensional Protein Identification Technology (MudPIT)
    Mol Cell Proteomics, Vol. 5, No. 1. (1 January 2006), pp. 53-56.
    by Emily I Chen, Johannes Hewel, Brunhilde Felding-Habermann, John R Yates
    posted to mudpit peptide-identification proteomics by nedwards on 2007-10-18 17:21:50 as **
  • ProbIDtree: An automated software program capable of identifying multiple peptides from a single collision-induced dissociation spectrum collected by a tandem mass spectrometer
    PROTEOMICS, Vol. 5, No. 16. (2005), pp. 4096-4106.
    by Ning Zhang, Xiao-Jun Li, Mingliang Ye, Sheng Pan, Benno Schwikowski, Ruedi Aebersold
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:39:40 as ** along with 1 person olberd
  • Intensity-Based Statistical Scorer for Tandem Mass Spectrometry
    Anal. Chem., Vol. 75, No. 3. (1 February 2003), pp. 435-444.
    by M Havilio, Y Haddad, Z Smilansky
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:37:53 as **
  • Comparison of probability and likelihood models for peptide identification from tandem mass spectrometry data.
    J Proteome Res, Vol. 4, No. 5. (t 2005), pp. 1687-1698.
    by WR Cannon, KH Jarman, BJ Webb-Robertson, DJ Baxter, CS Oehmen, KD Jarman, A Heredia-Langner, KJ Auberry, GA Anderson
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:22:15 as **
  • High-performance peptide identification by tandem mass spectrometry allows reliable automatic data processing in proteomics.
    Proteomics, Vol. 4, No. 7. (July 2004), pp. 1977-1984.
    by J Colinge, A Masselot, I Cusin, E Mahé, A Niknejad, G Argoud-Puy, S Reffas, N Bederr, A Gleizes, PA Rey, L Bougueleret
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:21:46 as **
  • OLAV: towards high-throughput tandem mass spectrometry data identification.
    Proteomics, Vol. 3, No. 8. (August 2003), pp. 1454-1463.
    by J Colinge, A Masselot, M Giron, T Dessingy, J Magnin
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:21:22 as **
  • A Statistical Basis for Testing the Significance of Mass Spectrometric Protein Identification Results
    Anal. Chem., Vol. 72, No. 5. (1 March 2000), pp. 999-1005.
    by J Eriksson, BT Chait, D Fenyo
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:19:03 as **
  • ProbID: A probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data
    PROTEOMICS, Vol. 2, No. 10. (2002), pp. 1406-1412.
    by Ning Zhang, Ruedi Aebersold, Benno Schwikowski
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-15 19:14:05 as **
  • A Hypergeometric Probability Model for Protein Identification and Validation Using Tandem Mass Spectral Data and Protein Sequence Databases
    Anal. Chem., Vol. 75, No. 15. (1 August 2003), pp. 3792-3798.
    by RG Sadygov, JR Yates
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-11 18:57:40 as **
  • Prediction of Error Associated with False-Positive Rate Determination for Peptide Identification in Large-Scale Proteomics Experiments Using a Combined Reverse and Forward Peptide Sequence Database Strategy
    J. Proteome Res., Vol. 6, No. 1. (5 January 2007), pp. 392-398.
    by EL Huttlin, AD Hegeman, AC Harms, MR Sussman
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-10-11 18:51:56 as **
  • De Novo peptide sequencing via tandem mass spectrometry: a graph-theoretical approach
    (1999), pp. 135-144.
    by Vlado Dancik, Theresa A Addona, Karl R Clauser, James E Vath, Pavel A Pevzner
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-10-10 19:55:35 as **
  • Selective Isolation of N-Blocked Peptides by Isocyanate-Coupled Resin
    Anal. Chem. (14 September 2007)
    by T Mikami, T Takao
    posted to genome-annotation n-terminal-peptides peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-09-21 13:45:34 as **
  • Artificial Neural Network Analysis for Evaluation of Peptide MS/MS Spectra in Proteomics
    Anal. Chem., Vol. 76, No. 6. (15 March 2004), pp. 1726-1732.
    by T Baczek, A Bucinski, AR Ivanov, R Kaliszan
    posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-09-20 18:12:53 as **
  • Empirical Statistical Model To Estimate the Accuracy of Peptide Identifications Made by MS/MS and Database Search
    Anal. Chem., Vol. 74, No. 20. (15 October 2002), pp. 5383-5392.
    by A Keller, AI Nesvizhskii, E Kolker, R Aebersold
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-09-19 18:47:39 as **
  • Comprehensive yeast proteome analysis using a capillary isoelectric focusing-based multidimensional separation platform coupled with ESI-MS/MS
    PROTEOMICS, Vol. 7, No. 8. (2007), pp. 1178-1187.
    by Weijie Wang, Tong Guo, Tao Song, Cheng S Lee, Brian M Balgley
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-09-13 20:29:28 as **
  • Comparative Evaluation of Tandem MS Search Algorithms Using a Target-Decoy Search Strategy
    Mol Cell Proteomics, Vol. 6, No. 9. (1 September 2007), pp. 1599-1608.
    by Brian M Balgley, Tom Laudeman, Li Yang, Tao Song, Cheng S Lee
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-09-13 20:17:07 as **
  • A fast coarse filtering method for peptide identification by mass spectrometry
    Bioinformatics, Vol. 22, No. 12. (15 June 2006), pp. 1524-1531.
    by Smriti R Ramakrishnan, Rui Mao, Aleksey A Nakorchevskiy, John T Prince, Willard S Willard, Weijia Xu, Edward M Marcotte, Daniel P Miranker
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-09-05 16:13:35 as **
  • Achieving in-depth proteomics profiling by mass spectrometry.
    ACS Chem Biol, Vol. 2, No. 1. (23 January 2007), pp. 39-52.
    by NG Ahn, JB Shabb, WM Old, KA Resing
    posted to mass-spectrometry peptide-identification protein-quantitation proteomics tandem-mass-spectrometry by nedwards on 2007-09-05 16:05:40 as ** along with 1 person jyuh
  • Prediction of Low-Energy Collision-Induced Dissociation Spectra of Peptides with Three or More Charges
    Anal. Chem., Vol. 77, No. 19. (1 October 2005), pp. 6364-6373.
    by Z Zhang
    posted to denovo-interpretation peptide-identification tandem-mass-spectrometry proteomics by nedwards on 2007-09-05 16:02:25 as **
  • Estimating the Statistical Significance of Peptide Identifications from Shotgun Proteomics Experiments
    J. Proteome Res., Vol. 6, No. 5. (4 May 2007), pp. 1758-1767.
    by RE Higgs, MD Knierman, A Bonnerfreeman, LM Gelbert, ST Patil, JE Hale
    posted to machine-learning peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-09-04 18:56:09 as **
  • A dynamic programming approach to de novo peptide sequencing via tandem mass spectrometry
    (2000), pp. 389-398.
    by Ting Chen, Ming-Yang Kao, Matthew Tepel, John Rush, George M Church
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 20:36:21 as ** along with 1 person antoniochiao
  • Searching sequence databases via de novo peptide sequencing by tandem mass spectrometry.
    Mol Biotechnol, Vol. 22, No. 3. (November 2002), pp. 301-315.
    by RS Johnson, JA Taylor
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:37:05 as **
  • Sequence optimization as an alternative to de novo analysis of tandem mass spectrometry data.
    Bioinformatics, Vol. 20, No. 14. (22 September 2004), pp. 2296-2304.
    by A Heredia-Langner, WR Cannon, KD Jarman, KH Jarman
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:36:44 as **
  • Robust accurate identification of peptides (RAId): deciphering MS2 data using a structured library search with de novo based statistics.
    Bioinformatics, Vol. 21, No. 19. (1 October 2005), pp. 3726-3732.
    by G Alves, YK Yu
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:36:24 as **
  • Identification of post-translational modifications via blind search of mass-spectra.
    Proc IEEE Comput Syst Bioinform Conf (2005), pp. 157-166.
    by D Tsur, S Tanner, E Zandi, V Bafna, PA Pevzner
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:34:19 as **
  • A point-process model for rapid identification of post-translational modifications.
    Pac Symp Biocomput (2006), pp. 327-338.
    by B Yan, T Zhou, P Wang, Z Liu, VA Emanuele, V Olman, Y Xu
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:34:00 as **
  • Peptide sequence tag-based blind identification of post-translational modifications with point process model.
    Bioinformatics, Vol. 22, No. 14. (15 July 2006)
    by C Liu, B Yan, Y Song, Y Xu, L Cai
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:33:23 as **
  • Fast de novo peptide sequencing and spectral alignment via tree decomposition.
    Pac Symp Biocomput (2006), pp. 255-266.
    by C Liu, Y Song, B Yan, Y Xu, L Cai
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:32:56 as ** along with 1 person mirzazadeh
  • Spectral networks: a new approach to de novo discovery of protein sequences and posttranslational modifications.
    Biotechniques, Vol. 42, No. 6. (June 2007)
    by N Bandeira
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:32:25 as ** along with 1 person jyuh
  • Identification of bacteria using tandem mass spectrometry combined with a proteome database and statistical scoring.
    Anal Chem, Vol. 76, No. 8. (15 April 2004), pp. 2355-2366.
    by JP Dworzanski, AP Snyder, R Chen, H Zhang, D Wishart, L Li
    posted to microorganism-identification peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:29:45 as **
  • New data base-independent, sequence tag-based scoring of peptide MS/MS data validates Mowse scores, recovers below threshold data, singles out modified peptides, and assesses the quality of MS/MS techniques.
    Mol Cell Proteomics, Vol. 4, No. 8. (August 2005), pp. 1180-1188.
    by MM Savitski, ML Nielsen, RA Zubarev
    posted to denovo-interpretation peptide-identification peptide-spectrum-score proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:29:16 as **
  • Statistical models for protein validation using tandem mass spectral data and protein amino acid sequence databases.
    Anal Chem, Vol. 76, No. 6. (15 March 2004), pp. 1664-1671.
    by RG Sadygov, H Liu, JR Yates
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:28:30 as ** along with 2 people nuin fishtank
  • Qscore: an algorithm for evaluating SEQUEST database search results.
    J Am Soc Mass Spectrom, Vol. 13, No. 4. (April 2002), pp. 378-386.
    by RE Moore, MK Young, TD Lee
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:27:55 as **
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