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nedwards's genome-annotation [21 articles]

当前文献位于 nedwards's 文献库 标签分类为 genome-annotation. You can also see everyone's genome-annotation.
  • Positional proteomics: preparation of amino-terminal peptides as a strategy for proteome simplification and characterization.
    Nat Protoc, Vol. 1, No. 4. (2006), pp. 1790-1798.
    by L McDonald, RJ Beynon
    posted to genome-annotation n-terminal-peptides proteomics tandem-mass-spectrometry by nedwards on 2007-10-30 15:17:02 as **
  • Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation
    Genome Res., Vol. 17, No. 9. (1 September 2007), pp. 1362-1377.
    by Nitin Gupta, Stephen Tanner, Navdeep Jaitly, Joshua N Adkins, Mary Lipton, Robert Edwards, Margaret Romine, Andrei Osterman, Vineet Bafna, Richard D Smith, Pavel A Pevzner
    posted to genome-annotation proteomics by nedwards on 2007-10-01 20:44:47 as ** along with 2 people alexl nitiniitk
  • Selective Isolation of N-Blocked Peptides by Isocyanate-Coupled Resin
    Anal. Chem. (14 September 2007)
    by T Mikami, T Takao
    posted to genome-annotation n-terminal-peptides peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-09-21 13:45:34 as **
  • Translation initiation at non-AUG triplets in mammalian cells
    J. Biol. Chem., Vol. 264, No. 9. (25 March 1989), pp. 5031-5035.
    by Ds Peabody
    posted to genome-annotation microorganism-identification sequence-database by nedwards on 2007-08-29 16:23:33 as **
  • Mass spectrometry and EST-database searching allows characterization of the multi-protein spliceosome complex
    Nature Genetics, Vol. 20 (1998), pp. 46-50.
    by Gitte Neubauer, Angus King, Juri Rappsilber, Cinzia Calvio, Mark Watson, Paul Ajuh, Judith Sleeman, Angus Lamond, Matthias Mann
    posted to genome-annotation proteomics sequence-database tandem-mass-spectrometry by nedwards on 2007-08-29 16:12:00 as **
  • A protein database constructed from low-coverage genomic sequence of Bacillus megaterium and its use for accelerated proteomic analysis
    Journal of Biotechnology, Vol. 124, No. 3. (25 July 2006), pp. 486-495.
    by Jibin Sun, Wei Wang, Claudia Hundertmark, An-Ping Zeng, Dieter Jahn, Wolf-Dieter Deckwer
    posted to bacillus genome-annotation microorganism-identification by nedwards on 2007-08-22 15:55:28 as **
  • A Method for Selective Isolation of the Amino-Terminal Peptide from [alpha]-Amino-Blocked Proteins
    Analytical Biochemistry, Vol. 222, No. 1. (October 1994), pp. 210-216.
    by TH Akiyama, T Sasagawa, M Suzuki, K Titani
    posted to genome-annotation n-terminal-peptides peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-14 18:28:14 as **
  • Exploring proteomes and analyzing protein processing by mass spectrometric identification of sorted N-terminal peptides
    Nat Biotech, Vol. 21, No. 5. (May 2003), pp. 566-569.
    by Kris Gevaert, Marc Goethals, Lennart Martens, Jozef Van Damme, An Staes, Gregoire R Thomas, Joel Vandekerckhove
    posted to genome-annotation n-terminal-peptides peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-14 18:27:21 as **
  • Isolation of N-Terminal Protein Sequence Tags from Cyanogen Bromide Cleaved Proteins as a Novel Approach to Investigate Hydrophobic Proteins
    J. Proteome Res., Vol. 2, No. 6. (8 December 2003), pp. 598-609.
    by K Kuhn, A Thompson, T Prinz, J Muller, C Baumann, G Schmidt, T Neumann, C Hamon
    posted to genome-annotation n-terminal-peptides peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-14 18:26:30 as **
  • Positional proteomics: selective recovery and analysis of N-terminal proteolytic peptides
    Nature Methods, Vol. 2, No. 12. (18 November 2005), pp. 955-957.
    by Lucy Mcdonald, Duncan HL Robertson, Jane L Hurst, Robert J Beynon
    posted to genome-annotation n-terminal-peptides peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-14 18:25:03 as **
  • High-Throughput Method for N-Terminal Sequencing of Proteins by MALDI Mass Spectrometry
    Anal. Chem., Vol. 77, No. 2. (15 January 2005), pp. 645-651.
    by M Yamaguchi, T Nakazawa, H Kuyama, T Obama, E Ando, Okamura, N Ueyama, S Norioka
    posted to genome-annotation n-terminal-peptides peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-14 18:23:19 as **
  • Mass spectrometry allows direct identification of proteins in large genomes.
    Proteomics, Vol. 1, No. 5. (May 2001), pp. 641-650.
    by B Küster, P Mortensen, JS Andersen, M Mann
    posted to genome-annotation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-14 16:08:02 as **
  • Dynamic spectrum quality assessment and iterative computational analysis of shotgun proteomic data: toward more efficient identification of post-translational modifications, sequence polymorphisms, and novel peptides.
    Mol Cell Proteomics, Vol. 5, No. 4. (April 2006), pp. 652-670.
    by AI Nesvizhskii, FF Roos, J Grossmann, M Vogelzang, JS Eddes, W Gruissem, S Baginsky, R Aebersold
    posted to genome-annotation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-08 14:21:13 as **
  • Interrogating the human genome using uninterpreted mass spectrometry data.
    Proteomics, Vol. 1, No. 5. (May 2001), pp. 651-667.
    by JS Choudhary, WP Blackstock, DM Creasy, JS Cottrell
    posted to genome-annotation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-08 14:10:03 as **
  • Novel gene and gene model detection using a whole genome open reading frame analysis in proteomics.
    Genome Biol, Vol. 7, No. 4. (2006)
    by D Fermin, BB Allen, TW Blackwell, R Menon, M Adamski, Y Xu, P Ulintz, GS Omenn, DJ States
    posted to genome-annotation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-08 14:09:32 as ** along with 1 person alexl
  • Genome annotation of Anopheles gambiae using mass spectrometry-derived data.
    BMC Genomics, Vol. 6 (2005)
    by DE Kalume, S Peri, R Reddy, J Zhong, M Okulate, N Kumar, A Pandey
    posted to genome-annotation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-08 14:08:37 as **
  • The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome.
    Nucleic Acids Res, Vol. 32, No. 13. (2004), pp. 3977-3983.
    by J Leipzig, P Pevzner, S Heber
    posted to alternative-splicing genome-annotation by nedwards on 2007-08-08 13:54:51 as ** along with 6 people and 1 group greg setar Cortel radek dchughes antonkratz spliceml
  • Splicing graphs and EST assembly problem.
    Bioinformatics, Vol. 18 Suppl 1 (2002)
    by S Heber, M Alekseyev, SH Sze, H Tang, PA Pevzner
    posted to alternative-splicing genome-annotation by nedwards on 2007-08-08 13:54:19 as ** along with 3 people and 1 group greg setar Cortel spliceml
  • Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry
    Genome Biology, Vol. 6, No. 1. (2004)
    by Frank Desiere, Eric Deutsch, Alexey Nesvizhskii, Parag Mallick, Nichole King, Jimmy Eng, Alan Aderem, Rose Boyle, Erich Brunner, Samuel Donohoe, Nelson Fausto, Ernst Hafen, Lee Hood, Michael Katze, Kathleen Kennedy, Floyd Kregenow, Hookeun Lee, Biaoyang Lin, Dan Martin, Jeffrey Ranish, David Rawlings, Lawrence Samelson, Yuzuru Shiio, Julian Watts, Bernd Wollscheid, Michael Wright, Wei Yan, Lihong Yang, Eugene Yi, Hui Zhang, Ruedi Aebersold
    posted to genome-annotation peptide-atlas peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-08 13:40:47 as **
  • Improving gene annotation using peptide mass spectrometry
    Genome Res., Vol. 17, No. 2. (1 February 2007), pp. 231-239.
    by Stephen Tanner, Zhouxin Shen, Julio Ng, Liliana Florea, Roderic Guigo, Steven P Briggs, Vineet Bafna
    posted to genome-annotation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-07 15:33:42 as *** along with 2 people and 1 group brant wenhan EisenLab
  • Novel peptide identification from tandem mass spectra using ESTs and sequence database compression
    Molecular Systems Biology, Vol. 3 (17 April 2007)
    by Nathan J Edwards
    posted to genome-annotation peptide-identification proteomics sequence-database sequencing-by-hybridization-graph tandem-mass-spectrometry by nedwards on 2007-08-07 14:46:00 as read along with 1 person zwang
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