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nedwards's library [389 articles]

最近录入 nedwards's 文献库:按阅读优先等级排序.
  • Mass Spectrometry and Computational Proteomics
    Encyclopedia of Genetics, Genomics, Proteomics and Bioinformatics
    by Vineet Bafna, Knut Reinert
    posted to mass-spectrometry proteomics by nedwards on 2007-08-07 15:23:02 as **** along with 1 person hoangmit
  • Shotgun Protein Sequencing: Assembly of Peptide Tandem Mass Spectra from Mixtures of Modified Proteins.
    Mol Cell Proteomics, Vol. 6, No. 7. (July 2007), pp. 1123-1134.
    by Nuno Bandeira, Karl R R Clauser, Pavel A A Pevzner
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-07 15:19:34 as **** along with 2 people jyuh neveaire
  • Rapid validation of protein identifications with the borderline statistical confidence via de novo sequencing and MS BLAST searches.
    J Proteome Res, Vol. 5, No. 9. (September 2006), pp. 2448-2456.
    by N Wielsch, H Thomas, V Surendranath, P Waridel, A Frank, P Pevzner, A Shevchenko
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-07 15:18:50 as **** along with 1 person jyuh
  • Protein identification by spectral networks analysis
    PNAS, Vol. 104, No. 15. (10 April 2007), pp. 6140-6145.
    by Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel A Pevzner
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-07 15:18:21 as **** along with 2 people jyuh rph
  • Shotgun protein sequencing by tandem mass spectra assembly.
    Anal Chem, Vol. 76, No. 24. (15 December 2004), pp. 7221-7233.
    by N Bandeira, H Tang, V Bafna, P Pevzner
    posted to proteomics tandem-mass-spectrometry by nedwards on 2007-08-07 15:17:45 as **** along with 1 person jyuh
  • Assessing bias in experiment design for large-scale mass spectrometry-based quantitative proteomics.
    Mol Cell Proteomics (7 July 2007)
    by Brian Piening, Jeff Whiteaker, Heidi Zhang, Scott A A Schaffer, Daniel Martin, Laura Hohmann, Kelly Cooke, James Olson, Stacey Hansen, Mark R R Flory, Hookeun Lee, Julian Watts, David R R Goodlett, Ruedi Aebersold, Amanda Paulovich, Benno Schwikowski, Amol Prakash
    posted to mass-spectrometry protein-quantitation protein-quantitation-statistics proteomics by nedwards on 2007-08-08 14:17:05 as *** along with 2 people jyuh kentsis
  • A suite of algorithms for the comprehensive analysis of complex protein mixtures using high-resolution LC-MS.
    Bioinformatics, Vol. 22, No. 15. (1 August 2006), pp. 1902-1909.
    by M Bellew, M Coram, M Fitzgibbon, M Igra, T Randolph, P Wang, D May, J Eng, R Fang, C Lin, J Chen, D Goodlett, J Whiteaker, A Paulovich, M McIntosh
    posted to proteomics-software proteomics protein-quantitation peak-detection mass-spectrometry isotope-cluster-modeling by nedwards on 2007-08-07 17:03:04 as *** along with 2 people olberd Gehrke
  • TOPP--the OpenMS proteomics pipeline.
    Bioinformatics, Vol. 23, No. 2. (15 January 2007)
    by O Kohlbacher, K Reinert, C Gröpl, E Lange, N Pfeifer, O Schulz-Trieglaff, M Sturm
    posted to mass-spectrometry protein-quantitation proteomics proteomics-software by nedwards on 2007-08-07 17:02:23 as *** along with 2 people moborg Gehrke
  • Improving gene annotation using peptide mass spectrometry
    Genome Res., Vol. 17, No. 2. (1 February 2007), pp. 231-239.
    by Stephen Tanner, Zhouxin Shen, Julio Ng, Liliana Florea, Roderic Guigo, Steven P Briggs, Vineet Bafna
    posted to genome-annotation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-07 15:33:42 as *** along with 2 people and 1 group brant wenhan EisenLab
  • Identification of post-translational modifications by blind search of mass spectra
    Nature Biotechnology, Vol. 23, No. 12. (27 November 2005), pp. 1562-1567.
    by Dekel Tsur, Stephen Tanner, Ebrahim Zandi, Vineet Bafna, Pavel A Pevzner
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-07 15:32:55 as *** along with 1 person Yanno
  • Peptide Sequence Tags for Fast Database Search in Mass-Spectrometry
    J. Proteome Res., Vol. 4, No. 4. (8 August 2005), pp. 1287-1295.
    by A Frank, S Tanner, V Bafna, P Pevzner
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-07 15:24:50 as *** along with 1 person hoangmit
  • Exploring the Precursor Ion Exclusion Feature of Liquid Chromatography−Electrospray Ionization Quadrupole Time-of-Flight Mass Spectrometry for Improving Protein Identification in Shotgun Proteome Analysis
    Anal. Chem., Vol. 80, No. 12. (15 June 2008), pp. 4696-4710.
    by Nan Wang, Liang Li
    posted to tandem-mass-spectrometry proteomics dynamic-exclusion by nedwards on 2008-07-03 21:08:53 as **
  • Recognition of the Carboxy-Terminal Peptide in Cyanogen Bromide Digests of Proteins
    Anal. Chem., Vol. 67, No. 9. (1995), pp. 1644-1645.
    by Constance M Murphy, Catherine Fenselau
    posted to tandem-mass-spectrometry proteomics c-terminal-peptides by nedwards on 2008-07-03 20:57:51 as **
  • A new method for C-terminal sequence analysis in the proteomic era
    Nature Methods, Vol. 2, No. 3. (17 February 2005), pp. 193-200.
    by Bart Samyn, Kjell Sergeant, Pedro Castanheira, Carlos Faro, Jozef V Van Beeumen
    posted to proteomics c-terminal-peptides by nedwards on 2008-07-03 20:51:30 as **
  • Proteome-derived, database-searchable peptide libraries for identifying protease cleavage sites
    Nature Biotechnology, Vol. 26, No. 6. (25 May 2008), pp. 685-694.
    by Oliver Schilling, Christopher M Overall
    posted to tandem-mass-spectrometry proteomics n-terminal-peptides by nedwards on 2008-07-03 20:48:14 as ** along with 1 person brianb
  • Proteases' prime targets revealed
    Nature Biotechnology, Vol. 26, No. 6., pp. 652-653.
    by Scott L Diamond, Doron Greenbaum
    posted to tandem-mass-spectrometry proteomics n-terminal-peptides by nedwards on 2008-07-03 20:47:24 as **
  • notes Reliable automatic protein identification from matrix-assisted laser desorption/ionization mass spectrometric peptide fingerprints
    Electrophoresis, Vol. 20, No. 18. (1999), pp. 3521-3526.
    by Peter Berndt, Uwe Hobohm, Hanno Langen
    posted to proteomics peak-detection mass-spectrometry isotope-cluster-modeling by nedwards on 2008-06-16 15:21:23 as **
  • Chemical Noise in Mass Spectrometry
    Spectroscopy, Vol. 17, No. 10. (October 2002)
    by Kenneth L Busch
    posted to peak-detection mass-spectrometry by nedwards on 2008-06-16 15:11:39 as **
  • Masses in Mass Spectrometry: Balancing the Analytical Scales
    Spectroscopy, Vol. 19, No. 11. (November 2004), pp. 32-34.
    by Kenneth L Busch
    posted to peak-detection mass-spectrometry by nedwards on 2008-06-16 15:09:55 as **
  • Debating Resolution and Mass Accuracy
    LCGC North America, Vol. 22, No. 2. (February 2004), pp. 118-130.
    by Michael P Balogh
    posted to peak-detection mass-spectrometry by nedwards on 2008-06-16 15:04:49 as **
  • A Mathematical Approach to Error Reduction in Mass Spectrometry
    Spectroscopy (2 May 2005)
    by Ming Gu, Yongdong Wang, Don Kuehl
    posted to peak-detection mass-spectrometry by nedwards on 2008-06-16 15:01:38 as **
  • Automated interpretation of mass spectra of complex mixtures by matching of isotope peak distributions
    Rapid Communications in Mass Spectrometry, Vol. 18, No. 20. (2004), pp. 2465-2472.
    by Jorge Fernández-De-Cossio, Luis J Gonzalez, Yoshinori Satomi, Lazaro Betancourt, Yassel Ramos, Vivian Huerta, Vladimir Besada, Gabriel Padron, Naoto Minamino, Toshifumi Takao
    posted to proteomics peak-detection mass-spectrometry isotope-label isotope-cluster-modeling by nedwards on 2008-06-16 14:56:12 as **
  • An automated method for the analysis of stable isotope labeling data in proteomics.
    Journal of the American Society for Mass Spectrometry, Vol. 16, No. 7. (July 2005), pp. 1181-1191.
    by X Zhang, W Hines, J Adamec, JM Asara, S Naylor, FE Regnier
    posted to proteomics peak-detection mass-spectrometry isotope-label isotope-cluster-modeling by nedwards on 2008-06-16 14:54:17 as **
  • Mass spectrometry-based proteomics turns quantitative.
    Nat Chem Biol, Vol. 1, No. 5. (October 2005), pp. 252-262.
    by SE Ong, M Mann
    posted to proteomics protein-quantitation mass-spectrometry isotope-label by nedwards on 2008-06-16 14:46:05 as ** along with 1 person balabu
  • Automated assignment of charge states from resolved isotopic peaks for multiply charged ions
    Journal of the American Society for Mass Spectrometry, Vol. 6, No. 1. (January 1995), pp. 52-56.
    by Michael W Senko, Steven C Beu, Fred W Mclafferty
    posted to peak-detection mass-spectrometry isotope-cluster-modeling by nedwards on 2008-06-16 14:44:34 as **
  • Estimating the Precision of Exact Mass Measurements on an Orthogonal Time-of-Flight Mass Spectrometer
    Anal. Chem., Vol. 73, No. 3. (1 February 2001), pp. 715-719.
    by KF Blom
    posted to peak-detection mass-spectrometry by nedwards on 2008-06-16 14:41:30 as **
  • Exact Mass Measurement of Polar Organic Molecules at Low Resolution Using Electrospray Ionization and a Quadrupole Mass Spectrometer
    Anal. Chem., Vol. 68, No. 20. (15 October 1996), pp. 3561-3569.
    by AN Tyler, E Clayton, BN Green
    posted to peak-detection mass-spectrometry isotope-cluster-modeling by nedwards on 2008-06-16 14:40:13 as **
  • notes Proteolytic 18O Labeling for Comparative Proteomics: Evaluation of Endoprotease Glu-C as the Catalytic Agent
    J. Proteome Res., Vol. 1, No. 1. (21 February 2002), pp. 27-33.
    by KJ Reynolds, X Yao, C Fenselau
    posted to proteomics mass-spectrometry isotope-label isotope-cluster-modeling by nedwards on 2008-06-16 14:37:49 as **
  • Rapid Calculation of Isotope Distributions
    Anal. Chem., Vol. 67, No. 15. (1995), pp. 2699-2704.
    by Alan L Rockwood, Steven L Van Orden, Richard D Smith
    posted to peak-detection mass-spectrometry isotope-cluster-modeling by nedwards on 2008-06-16 14:33:23 as **
  • Isotopic Distributions in Mass Spectra of Large Molecules
    Anal. Chem., Vol. 55, No. 2. (1983), pp. 353-356.
    by James Yergey, David Heller, Gordon Hansen, Robert J Cotter, Catherine Fenselau
    posted to proteomics peak-detection mass-spectrometry isotope-cluster-modeling by nedwards on 2008-06-16 14:24:31 as **
  • A universal algorithm for fast and automated charge state deconvolution of electrospray mass-to-charge ratio spectra
    Journal of the American Society for Mass Spectrometry, Vol. 9, No. 3. (March 1998), pp. 225-233.
    by Zhongqi Zhang, Alan G Marshall
    posted to peak-detection mass-spectrometry isotope-cluster-modeling by nedwards on 2008-06-16 14:18:17 as **
  • Automated deconvolution and deisotoping of electrospray mass spectra
    Journal of Mass Spectrometry, Vol. 37, No. 2. (2002), pp. 223-229.
    by Marco Wehofsky, Ralf Hoffmann
    posted to proteomics peak-detection mass-spectrometry isotope-cluster-modeling by nedwards on 2008-06-16 14:16:54 as **
  • notes Improving protein identification from peptide mass fingerprinting through a parameterized multi-level scoring algorithm and an optimized peak detection
    Electrophoresis, Vol. 20, No. 18. (1999), pp. 3535-3550.
    by Robin Gras, Markus Müller, Elisabeth Gasteiger, Steven Gay, Pierre-Alain Binz, William Bienvenut, Christine Hoogland, Jean-Charles Sanchez, Amos Bairoch, Denis F Hochstrasser, Ron D Appel
    posted to proteomics peak-detection mass-spectrometry isotope-cluster-modeling by nedwards on 2008-06-16 14:16:07 as **
  • A wide range of protein isoforms in serum and plasma uncovered by a quantitative intact protein analysis system
    PROTEOMICS, Vol. 5, No. 13. (2005), pp. 3343-3352.
    by David e, Rork Kuick, Hong Wang, Vladimir Galchev, Bin Deng, Rong Zhao, John Tra, Michael r, Ravi Amunugama, David Allen, Angela k, John r, Philip Andrews, Gilbert s, Samir m
    posted to no-tag by nedwards on 2008-06-13 17:14:13 as **
  • Intact-protein-based High-resolution Three-dimensional Quantitative Analysis System for Proteome Profiling of Biological Fluids
    Mol Cell Proteomics, Vol. 4, No. 5. (1 May 2005), pp. 618-625.
    by Hong Wang, Shawn G Clouthier, Vladimir Galchev, David E Misek, Ulrich Duffner, Chang-Ki Min, Rong Zhao, John Tra, Gilbert S Omenn, James L Ferrara, Samir M Hanash
    posted to no-tag by nedwards on 2008-06-13 17:12:41 as **
  • Contribution of protein fractionation to depth of analysis of the serum and plasma proteomes.
    J Proteome Res, Vol. 6, No. 9. (September 2007), pp. 3558-3565.
    by V Faca, SJ Pitteri, L Newcomb, V Glukhova, D Phanstiel, A Krasnoselsky, Q Zhang, J Struthers, H Wang, J Eng, M Fitzgibbon, M McIntosh, S Hanash
    posted to no-tag by nedwards on 2008-06-13 17:08:18 as ** along with 1 person jyuh
  • Absolute Quantification of Proteins by LCMSE: A Virtue of Parallel ms Acquisition
    Mol Cell Proteomics, Vol. 5, No. 1. (1 January 2006), pp. 144-156.
    by Jeffrey C Silva, Marc V Gorenstein, Guo-Zhong Li, Johannes P Vissers, Scott J Geromanos
    posted to proteomics protein-quantitation mass-spectrometry by nedwards on 2008-06-09 15:13:13 as ** along with 1 person olberd
  • Exponentially Modified Protein Abundance Index (emPAI) for Estimation of Absolute Protein Amount in Proteomics by the Number of Sequenced Peptides per Protein
    Mol Cell Proteomics, Vol. 4, No. 9. (1 September 2005), pp. 1265-1272.
    by Yasushi Ishihama, Yoshiya Oda, Tsuyoshi Tabata, Toshitaka Sato, Takeshi Nagasu, Juri Rappsilber, Matthias Mann
    posted to tandem-mass-spectrometry proteomics protein-quantitation-statistics protein-quantitation by nedwards on 2008-06-09 15:04:19 as **
  • A Biological Atlas of Functional Maps
    Cell, Vol. 104, No. 3. (9 February 2001), pp. 333-339.
    by Marc Vidal
    posted to systems-biology by nedwards on 2008-05-09 16:52:32 as ** along with 1 person mingzhi
  • Hierarchical structure and the prediction of missing links in networks
    Nature, Vol. 453, No. 7191., pp. 98-101.
    by Aaron Clauset, Cristopher Moore, MEJ Newman
    posted to systems-biology protein-protein-interactions by nedwards on 2008-05-09 16:38:15 as ** along with 35 people sen_cheng jjray rds Borelli ptrobajo apwesolowski dpf cmmorel fbaroni balicea cmor kengg pbull jago Ema gtgt15 hryk i-stevenson pinney elsantosneto markusd eyliu craigwilson06 jyuh margaritis gagliol bryanhughes akshat tmmurali cactus AbnerCYH tny briordan deanmalmgren soramame_0518
  • Coexpression analysis of human genes across many microarray data sets.
    Genome Res, Vol. 14, No. 6. (June 2004), pp. 1085-1094.
    by HK Lee, AK Hsu, J Sajdak, J Qin, P Pavlidis
    posted to systems-biology gene-expression data-integration by nedwards on 2008-05-09 16:37:35 as ** along with 11 people and 2 groups jo_davies maryee gpalidwor giovanni jeremymiller hawkeyehammer grahamc macavity1g raylim sgoetz wilbur GeschwindLab Indigene
  • GeneRank: Using search engine technology for the analysis of microarray experiments
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Julie Morrison, Rainer Breitling, Desmond Higham, David Gilbert
    posted to systems-biology gene-expression data-integration by nedwards on 2008-05-09 15:12:53 as ** along with 1 person jiny
  • CGI: a new approach for prioritizing genes by combining gene expression and proteinprotein interaction data
    Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 215-221.
    by Ma, Xiaotu, Lee, Hyunju, Sun, Fengzhu
    posted to systems-biology gene-expression data-integration by nedwards on 2008-05-08 14:07:28 as ** along with 1 person jiny
  • Relating whole-genome expression data with protein-protein interactions.
    Genome Res, Vol. 12, No. 1. (January 2002), pp. 37-46.
    by R Jansen, D Greenbaum, M Gerstein
    posted to systems-biology gene-expression data-integration by nedwards on 2008-05-08 14:06:02 as ** along with 8 people carlk paolomarcatili gurkanbebek gespim grahamc cjeans iris_2001 kintoki
  • Proteomic strategies for rapid characterization of micro-organisms
    European Journal of Mass Spectrometry, Vol. 13, No. 1. (2007), pp. 35-39.
    by C Fenselau, S Russell, S Swatkoski, N Edwards
    posted to proteomics microorganism-identification mass-spectrometry bacillus by nedwards on 2008-05-05 16:04:15 as **
  • Efficient decoding algorithms for generalized hidden Markov model gene finders.
    BMC Bioinformatics, Vol. 6 (2005)
    by WH Majoros, M Pertea, AL Delcher, SL Salzberg
    posted to gene-finders by nedwards on 2008-05-02 21:35:43 as ** along with 2 people alexl mdimon
  • Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population
    Mol Biol Evol, Vol. 12, No. 5. (1 September 1995), pp. 921-927.
    by L Excoffier, M Slatkin
    posted to phasing haplotypes by nedwards on 2008-05-02 21:34:38 as **
  • Observation ofEscherichia coliRibosomal Proteins and Their Posttranslational Modifications by Mass Spectrometry
    Analytical Biochemistry, Vol. 269, No. 1. (10 April 1999), pp. 105-112.
    by Randy J Arnold, James P Reilly
    posted to microorganism-identification mass-spectrometry by nedwards on 2008-05-02 21:24:26 as **
  • Combinatorial Problems Arising in SNP and Haplotype Analysis
    Discrete Mathematics and Theoretical Computer Science (2003), pp. 26-47.
    by Bjarni Halldórsson, Vineet Bafna, Nathan Edwards, Ross Lippert, Shibu Yooseph, Sorin Istrail
    posted to phasing haplotypes by nedwards on 2008-05-02 18:57:12 as **
  • Dependence network modeling for biomarker identification
    Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 198-206.
    by Qiu, Peng, Wang, Z Jane, Liu, KJ Ray, Hu, Zhang-Zhi, Wu, H Cathy
    posted to systems-biology by nedwards on 2008-05-02 15:12:02 as **
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