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nedwards's Pevzner [25 articles]

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  • PepNovo: De Novo Peptide Sequencing via Probabilistic Network Modeling
    Anal. Chem., Vol. 77, No. 4. (15 February 2005), pp. 964-973.
    by A Frank, P Pevzner
    posted to denovo-interpretation peptide-identification peptide-spectrum-score proteomics tandem-mass-spectrometry by nedwards on 2007-11-07 21:13:46 as **
  • De Novo peptide sequencing via tandem mass spectrometry: a graph-theoretical approach
    (1999), pp. 135-144.
    by Vlado Dancik, Theresa A Addona, Karl R Clauser, James E Vath, Pavel A Pevzner
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-10-10 19:55:35 as **
  • Whole proteome analysis of post-translational modifications: Applications of mass-spectrometry for proteogenomic annotation
    Genome Res., Vol. 17, No. 9. (1 September 2007), pp. 1362-1377.
    by Nitin Gupta, Stephen Tanner, Navdeep Jaitly, Joshua N Adkins, Mary Lipton, Robert Edwards, Margaret Romine, Andrei Osterman, Vineet Bafna, Richard D Smith, Pavel A Pevzner
    posted to genome-annotation proteomics by nedwards on 2007-10-01 20:44:47 as ** along with 2 people nitiniitk alexl
  • Finding motifs in the twilight zone.
    Bioinformatics, Vol. 18, No. 10. (October 2002), pp. 1374-1381.
    by U Keich, PA Pevzner
    posted to motif-finding by nedwards on 2007-09-05 13:56:03 as ** along with 2 people dquest wilbur
  • Subtle motifs: defining the limits of motif finding algorithms.
    Bioinformatics, Vol. 18, No. 10. (October 2002), pp. 1382-1390.
    by U Keich, PA Pevzner
    posted to motif-finding by nedwards on 2007-09-05 13:55:47 as ** along with 3 people and 1 group tmmurali okarsligil dquest Bioinformatics
  • Identification of post-translational modifications via blind search of mass-spectra.
    Proc IEEE Comput Syst Bioinform Conf (2005), pp. 157-166.
    by D Tsur, S Tanner, E Zandi, V Bafna, PA Pevzner
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:34:19 as **
  • De novo peptide sequencing via tandem mass spectrometry.
    J Comput Biol, Vol. 6, No. 3-4. (r 1999), pp. 327-342.
    by V Dancík, TA Addona, KR Clauser, JE Vath, PA Pevzner
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:24:53 as **
  • PepNovo: de novo peptide sequencing via probabilistic network modeling.
    Anal Chem, Vol. 77, No. 4. (15 February 2005), pp. 964-973.
    by A Frank, P Pevzner
    posted to denovo-interpretation peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:20:54 as **
  • Efficiency of database search for identification of mutated and modified proteins via mass spectrometry.
    Genome Res, Vol. 11, No. 2. (February 2001), pp. 290-299.
    by PA Pevzner, Z Mulyukov, V Dancik, CL Tang
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:12:58 as **
  • Mutation-tolerant protein identification by mass spectrometry.
    J Comput Biol, Vol. 7, No. 6. (2000), pp. 777-787.
    by PA Pevzner, V Dancík, CL Tang
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-30 16:12:24 as **
  • Efficiency of database search for identification of mutated and modified proteins via mass spectrometry.
    Genome Res, Vol. 11, No. 2. (Feb 2001), pp. 290-299.
    by PA Pevzner, Z Mulyukov, V Dancik, CL Tang
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-09 15:07:03 as ** along with 1 person hoangmit
  • Whole-genome sequencing and assembly with high-throughput, short-read technologies.
    PLoS ONE, Vol. 2 (2007)
    by A Sundquist, M Ronaghi, H Tang, P Pevzner, S Batzoglou
    posted to genome-assembly sequencing-by-hybridization-graph short-read-sequencing by nedwards on 2007-08-08 15:24:22 as ** along with 3 people and 1 group jyuh azazello iris42 gatech-compgenomics
  • The Alternative Splicing Gallery (ASG): bridging the gap between genome and transcriptome.
    Nucleic Acids Res, Vol. 32, No. 13. (2004), pp. 3977-3983.
    by J Leipzig, P Pevzner, S Heber
    posted to alternative-splicing genome-annotation by nedwards on 2007-08-08 13:54:51 as ** along with 6 people and 1 group greg setar Cortel radek dchughes antonkratz spliceml
  • Splicing graphs and EST assembly problem.
    Bioinformatics, Vol. 18 Suppl 1 (2002)
    by S Heber, M Alekseyev, SH Sze, H Tang, PA Pevzner
    posted to alternative-splicing genome-annotation by nedwards on 2007-08-08 13:54:19 as ** along with 3 people and 1 group greg setar Cortel spliceml
  • Fragment assembly with short reads.
    Bioinformatics, Vol. 20, No. 13. (1 September 2004), pp. 2067-2074.
    by M Chaisson, P Pevzner, H Tang
    posted to genome-assembly sequencing-by-hybridization-graph short-read-sequencing by nedwards on 2007-08-08 13:52:59 as ** along with 1 person bioinfo
  • An Eulerian path approach to DNA fragment assembly.
    Proc Natl Acad Sci U S A, Vol. 98, No. 17. (14 August 2001), pp. 9748-9753.
    by PA Pevzner, H Tang, MS Waterman
    posted to genome-assembly sequencing-by-hybridization-graph by nedwards on 2007-08-08 13:50:39 as ** along with 7 people and 2 groups brl A_Olympia briann jmeppley AaronDarling azazello jwhitney Philosophy_of_Information Blog_and_Wiki_Research
  • Identification of post-translational modifications by blind search of mass spectra
    Nature Biotechnology, Vol. 23, No. 12. (27 November 2005), pp. 1562-1567.
    by Dekel Tsur, Stephen Tanner, Ebrahim Zandi, Vineet Bafna, Pavel A Pevzner
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-07 15:32:55 as *** along with 1 person Yanno
  • Peptide Sequence Tags for Fast Database Search in Mass-Spectrometry
    J. Proteome Res., Vol. 4, No. 4. (8 August 2005), pp. 1287-1295.
    by A Frank, S Tanner, V Bafna, P Pevzner
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-07 15:24:50 as *** along with 1 person hoangmit
  • Identification of Post-Translational Modifications via Blind Search of Mass-Spectra.
    (2005), pp. 157-166.
    by Dekel Tsur, Stephen Tanner, Ebrahim Zandi, Vineet Bafna, Pavel A Pevzner
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-07 15:23:55 as ** along with 1 person hoangmit
  • InsPecT: identification of post translationally modified peptides from tandem mass spectra.
    Anal Chem, Vol. 77, No. 14. (15 July 2005), pp. 4626-4639.
    by S Tanner, H Shu, A Frank, LC Wang, E Zandi, M Mumby, PA Pevzner, V Bafna
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-07 15:22:15 as ** along with 1 person hoangmit
  • De novo repeat classification and fragment assembly.
    Genome Res, Vol. 14, No. 9. (September 2004), pp. 1786-1796.
    by PA Pevzner, H Tang, G Tesler
    posted to genome-assembly sequencing-by-hybridization-graph by nedwards on 2007-08-07 15:20:54 as read along with 11 people brl briann operon timflutre azazello prajlondhe urgi yoanjacquemin dmc Ema Neeperando
  • Shotgun Protein Sequencing: Assembly of Peptide Tandem Mass Spectra from Mixtures of Modified Proteins.
    Mol Cell Proteomics, Vol. 6, No. 7. (July 2007), pp. 1123-1134.
    by Nuno Bandeira, Karl R R Clauser, Pavel A A Pevzner
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-07 15:19:34 as **** along with 2 people jyuh neveaire
  • Rapid validation of protein identifications with the borderline statistical confidence via de novo sequencing and MS BLAST searches.
    J Proteome Res, Vol. 5, No. 9. (September 2006), pp. 2448-2456.
    by N Wielsch, H Thomas, V Surendranath, P Waridel, A Frank, P Pevzner, A Shevchenko
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-07 15:18:50 as **** along with 1 person jyuh
  • Protein identification by spectral networks analysis
    PNAS, Vol. 104, No. 15. (10 April 2007), pp. 6140-6145.
    by Nuno Bandeira, Dekel Tsur, Ari Frank, Pavel A Pevzner
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2007-08-07 15:18:21 as **** along with 2 people jyuh rph
  • Shotgun protein sequencing by tandem mass spectra assembly.
    Anal Chem, Vol. 76, No. 24. (15 December 2004), pp. 7221-7233.
    by N Bandeira, H Tang, V Bafna, P Pevzner
    posted to proteomics tandem-mass-spectrometry by nedwards on 2007-08-07 15:17:45 as **** along with 1 person jyuh
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