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nedwards's library [362 articles]

最近录入 nedwards's 文献库.
  • A Biological Atlas of Functional Maps
    Cell, Vol. 104, No. 3. (9 February 2001), pp. 333-339.
    by Marc Vidal
    posted to systems-biology by nedwards on 2008-05-09 16:52:32 as ** along with 1 person mingzhi
  • Hierarchical structure and the prediction of missing links in networks
    Nature, Vol. 453, No. 7191., pp. 98-101.
    by Aaron Clauset, Cristopher Moore, MEJ Newman
    posted to systems-biology protein-protein-interactions by nedwards on 2008-05-09 16:38:15 as ** along with 24 people pbull jago Ema gtgt15 hryk i-stevenson pinney elsantosneto markusd eyliu craigwilson06 jyuh margaritis gagliol bryanhughes akshat tmmurali cactus AbnerCYH tny briordan deanmalmgren soramame_0518 jjray
  • Coexpression analysis of human genes across many microarray data sets.
    Genome Res, Vol. 14, No. 6. (June 2004), pp. 1085-1094.
    by HK Lee, AK Hsu, J Sajdak, J Qin, P Pavlidis
    posted to systems-biology gene-expression data-integration by nedwards on 2008-05-09 16:37:35 as ** along with 11 people and 2 groups jo_davies maryee gpalidwor giovanni jeremymiller hawkeyehammer grahamc macavity1g raylim sgoetz wilbur GeschwindLab Indigene
  • GeneRank: Using search engine technology for the analysis of microarray experiments
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Julie Morrison, Rainer Breitling, Desmond Higham, David Gilbert
    posted to systems-biology gene-expression data-integration by nedwards on 2008-05-09 15:12:53 as ** along with 1 person jiny
  • CGI: a new approach for prioritizing genes by combining gene expression and proteinprotein interaction data
    Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 215-221.
    by Ma, Xiaotu, Lee, Hyunju, Sun, Fengzhu
    posted to systems-biology gene-expression data-integration by nedwards on 2008-05-08 14:07:28 as ** along with 1 person jiny
  • Relating whole-genome expression data with protein-protein interactions.
    Genome Res, Vol. 12, No. 1. (January 2002), pp. 37-46.
    by R Jansen, D Greenbaum, M Gerstein
    posted to systems-biology gene-expression data-integration by nedwards on 2008-05-08 14:06:02 as ** along with 6 people gurkanbebek gespim grahamc cjeans iris_2001 kintoki
  • Proteomic strategies for rapid characterization of micro-organisms
    European Journal of Mass Spectrometry, Vol. 13, No. 1. (2007), pp. 35-39.
    by C Fenselau, S Russell, S Swatkoski, N Edwards
    posted to proteomics microorganism-identification mass-spectrometry bacillus by nedwards on 2008-05-05 16:04:15 as **
  • Efficient decoding algorithms for generalized hidden Markov model gene finders.
    BMC Bioinformatics, Vol. 6 (2005)
    by WH Majoros, M Pertea, AL Delcher, SL Salzberg
    posted to gene-finders by nedwards on 2008-05-02 21:35:43 as ** along with 1 person mdimon
  • Maximum-likelihood estimation of molecular haplotype frequencies in a diploid population
    Mol Biol Evol, Vol. 12, No. 5. (1 September 1995), pp. 921-927.
    by L Excoffier, M Slatkin
    posted to phasing haplotypes by nedwards on 2008-05-02 21:34:38 as **
  • Observation ofEscherichia coliRibosomal Proteins and Their Posttranslational Modifications by Mass Spectrometry
    Analytical Biochemistry, Vol. 269, No. 1. (10 April 1999), pp. 105-112.
    by Randy J Arnold, James P Reilly
    posted to microorganism-identification mass-spectrometry by nedwards on 2008-05-02 21:24:26 as **
  • Combinatorial Problems Arising in SNP and Haplotype Analysis
    Discrete Mathematics and Theoretical Computer Science (2003), pp. 26-47.
    by Bjarni Halldórsson, Vineet Bafna, Nathan Edwards, Ross Lippert, Shibu Yooseph, Sorin Istrail
    posted to phasing haplotypes by nedwards on 2008-05-02 18:57:12 as **
  • Dependence network modeling for biomarker identification
    Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 198-206.
    by Qiu, Peng, Wang, Z Jane, Liu, KJ Ray, Hu, Zhang-Zhi, Wu, H Cathy
    posted to systems-biology by nedwards on 2008-05-02 15:12:02 as **
  • Ensemble dependence model for classification and prediction of cancer and normal gene expression data
    Bioinformatics, Vol. 21, No. 14. (15 July 2005), pp. 3114-3121.
    by Peng Qiu, Jane Z Wang, Ray KJ Liu
    posted to systems-biology correlation by nedwards on 2008-05-02 14:56:33 as **
  • Gene expression profiling predicts clinical outcome of breast cancer.
    Nature, Vol. 415, No. 6871. (31 January 2002), pp. 530-536.
    by LJ van 't Veer, H Dai, MJ van de Vijver, YD He, AA Hart, M Mao, HL Peterse, K van der Kooy, MJ Marton, AT Witteveen, GJ Schreiber, RM Kerkhoven, C Roberts, PS Linsley, R Bernards, SH Friend
    posted to systems-biology gene-expression data-integration breast-cancer by nedwards on 2008-04-29 18:26:04 as ** along with 12 people and 1 group jo_davies jfr tuck bedo giovanni frohike Ao_Li2007 lyndon macavity1g winterschlaefer Lara waghsk GeschwindLab
  • The Gene Expression Response of Breast Cancer to Growth Regulators: Patterns and Correlation with Tumor Expression Profiles
    Cancer Res, Vol. 63, No. 21. (1 November 2003), pp. 7158-7166.
    by Heather E Cunliffe, Markus Ringner, Sven Bilke, Robert L Walker, Jennifer M Cheung, Yidong Chen, Paul S Meltzer
    posted to systems-biology gene-expression data-integration breast-cancer by nedwards on 2008-04-29 18:24:39 as **
  • Isoform Analysis of LC−MS/MS Data from Multidimensional Fractionation of the Serum Proteome
    J. Proteome Res. (18 April 2008)
    by Alexei L Krasnoselsky, Vitor M Faca, Sharon J Pitteri, Qing Zhang, Samir M Hanash
    posted to tandem-mass-spectrometry proteomics protein-isoforms by nedwards on 2008-04-25 15:58:47 as **
  • Linear Discriminant Analysis-Based Estimation of the False Discovery Rate for Phosphopeptide Identifications
    J. Proteome Res. (19 April 2008)
    by Xiuxia Du, Feng Yang, Nathan P Manes, David L Stenoien, Matthew E Monroe, Joshua N Adkins, David J States, Samuel O Purvine, Ii Camp, Richard D Smith
    posted to tandem-mass-spectrometry proteomics phosphorylation phosphopeptide peptide-identification-statistics by nedwards on 2008-04-25 15:56:45 as ** along with 2 people neils brianb
  • A statistical framework for genomic data fusion.
    Bioinformatics, Vol. 20, No. 16. (1 November 2004), pp. 2626-2635.
    by GR Lanckriet, TD De Bie, N Cristianini, MI Jordan, WS Noble
    posted to data-integration heterogeneous-data-sources systems-biology by nedwards on 2008-04-17 16:52:51 as ** along with 3 people tmmurali jfr mbeautru
  • A data integration methodology for systems biology.
    Proc Natl Acad Sci U S A (21 November 2005)
    by Daehee Hwang, Alistair G G Rust, Stephen Ramsey, Jennifer J J Smith, Deena M M Leslie, Andrea D D Weston, Pedro de Atauri, John D D Aitchison, Leroy Hood, Andrew F F Siegel, Hamid Bolouri
    posted to data-integration heterogeneous-data-sources systems-biology by nedwards on 2008-04-17 16:52:24 as ** along with 17 people and 3 groups brian tmmurali dragonrez okarsligil jfr lfriedl Schmidtc eweaver wnpx biosv Sharpshoot noano mbeautru reidy grahamc GeeSharpMinor athleem kdl Bioinformatics JJJ
  • A data integration methodology for systems biology: Experimental verification
    PNAS, Vol. 102, No. 48. (29 November 2005), pp. 17302-17307.
    by Daehee Hwang, Jennifer J Smith, Deena M Leslie, Andrea D Weston, Alistair G Rust, Stephen Ramsey, Pedro de Atauri, Andrew F Siegel, Hamid Bolouri, John D Aitchison, Leroy Hood
    posted to data-integration heterogeneous-data-sources systems-biology by nedwards on 2008-04-17 16:51:56 as ** along with 10 people and 2 groups Retchless tmmurali dragonrez okarsligil lfriedl lyongu eweaver wnpx mbeautru GeeSharpMinor kdl Bioinformatics
  • Evaluation and integration of 49 genome-wide experiments and the prediction of previously unknown obesity-related genes
    Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2910-2917.
    by Sangeeta B English, Atul J Butte
    posted to data-integration heterogeneous-data-sources systems-biology by nedwards on 2008-04-17 16:50:45 as ** along with 3 people tmmurali jfr barriot
  • The properties of high-dimensional data spaces: implications for exploring gene and protein expression data
    Nat Rev Cancer, Vol. 8, No. 1. (January 2008), pp. 37-49.
    by Robert Clarke, Habtom W Ressom, Antai Wang, Jianhua Xuan, Minetta C Liu, Edmund A Gehan, Yue Wang
    posted to data-integration by nedwards on 2008-04-17 16:50:01 as ** along with 7 people and 1 group jyuh tmmurali dwf frohike cjeans shikin blackm0k Bioinformatics
  • Role of Cadmium in the Regulation of AR Gene Expression and Activity
    Endocrinology, Vol. 143, No. 1. (1 January 2002), pp. 263-275.
    by Mary B Martin, James H Voeller, Edward P Gelmann, Jianming Lu, Elly-Gerald Stoica, Elijah J Hebert, Ronald Reiter, Baljit Singh, Mark Danielsen, Elizabeth Pentecost, Adriana Stoica
    posted to androgen cadmium by nedwards on 2008-04-17 15:52:54 as **
  • Cadmium mimics the in vivo effects of estrogen in the uterus and mammary gland
    Nat Med, Vol. 9, No. 8. (2003), pp. 1081-1084.
    by Michael D Johnson, Nicholas Kenney, Adriana Stoica, Leena Hilakivi-Clarke, Baljit Singh, Gloria Chepko, Robert Clarke, Peter F Sholler, Apolonio A Lirio, Colby Foss, Ronald Reiter, Bruce Trock, Soonmyoung Paik, Mary B Martin
    posted to cadmium estrogen by nedwards on 2008-04-17 15:43:50 as **
  • Cadmium's disguise dupes the estrogen receptor
    Nat Med, Vol. 9, No. 8. (2003), pp. 1000-1001.
    by Stephen Safe
    posted to cadmium estrogen by nedwards on 2008-04-17 15:43:25 as **
  • Evaluation of a new 3-h hybridization method for detecting the mecA gene in Staphylococcus aureus and comparison with existing genotypic and phenotypic susceptibilty testing methods
    J. Antimicrob. Chemother., Vol. 43, No. 4. (1 April 1999), pp. 467-475.
    by Robert L Skov, Lars V Pallesen, Rikke L Poulsen, Frank Espersen
    posted to antibiotic-resistance staphylococcus-aureus by nedwards on 2008-04-16 21:00:04 as **
  • Protein networks in disease
    Genome Res., Vol. 18, No. 4. (1 April 2008), pp. 644-652.
    by Trey Ideker, Roded Sharan
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-16 19:18:04 as ** along with 13 people jfr thomaskelder gracio schuylrp jyuh tmmurali Borelli jwdietrich frohike bootsy roys mclarenv phoenixzxl
  • Protein-protein interaction networks and biology—what's the connection?
    Nature Biotechnology, Vol. 26, No. 1., pp. 69-72.
    by Luke Hakes, John W Pinney, David L Robertson, Simon C Lovell
    posted to protein-protein-interactions systems-biology by nedwards on 2008-04-16 14:50:00 as ** along with 13 people and 1 group Yanno jyuh tmmurali jfr balicea dullhunk neils mikaelhuss cjeans biehl shikin mclarenv Yumyai GeneGo
  • A Bayesian networks approach for predicting protein-protein interactions from genomic data.
    Science, Vol. 302, No. 5644. (17 October 2003), pp. 449-453.
    by R Jansen, H Yu, D Greenbaum, Y Kluger, NJ Krogan, S Chung, A Emili, M Snyder, JF Greenblatt, M Gerstein
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-16 13:54:41 as ** along with 16 people and 2 groups lfriedl balajis opheliav yuval wnpx nickluscombe ruvido raiyar massivemayhem kdang dbgrant karfunkel Evangelia shung phoenixzxl penpen926 kdl EBI-regulation
  • Integrated Protein Interaction Networks for 11 Microbes
    : Research in Computational Molecular Biology (2006), pp. 1-14.
    by Balaji S Srinivasan, Antal F Novak, Jason A Flannick, Serafim Batzoglou, Harley H Mcadams
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-16 13:51:52 as ** along with 1 person balajis
  • Functional genome annotation through phylogenomic mapping
    Nature Biotechnology, Vol. 23, No. 6. (06 June 2005), pp. 691-698.
    by Balaji S Srinivasan, Nora B Caberoy, Garret Suen, Rion G Taylor, Radhika Shah, Farah Tengra, Barry S Goldman, Anthony G Garza, Roy D Welch
    posted to protein-protein-interactions systems-biology by nedwards on 2008-04-16 13:48:22 as ** along with 10 people and 1 group operon setar tmmurali pggm aprasad balajis nuke2005 lyongu blobbybirdman kroos Myxo group
  • IntNetDB v1.0: An integrated protein-protein interaction network database generated by a probabilistic model
    BMC Bioinformatics, Vol. 7 (18 November 2006), 508.
    by Kai Xia, Dong Dong, Jing-Dong J Han
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-16 13:43:44 as ** along with 3 people wnpx cdallett maralena
  • Predicting co-complexed protein pairs using genomic and proteomic data integration.
    BMC Bioinformatics, Vol. 5 (16 April 2004)
    by LV Zhang, SL Wong, OD King, FP Roth
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-16 13:41:55 as ** along with 2 people and 1 group lfriedl reidy kdl
  • Assessing the limits of genomic data integration for predicting protein networks.
    Genome Res, Vol. 15, No. 7. (July 2005), pp. 945-953.
    by LJ Lu, Y Xia, A Paccanaro, H Yu, M Gerstein
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-16 13:39:56 as ** along with 10 people and 2 groups iris_2001 okarsligil lfriedl balajis maryee opheliav wnpx mbeautru eukfn grahamc kdl Bioinformatics
  • Network modeling links breast cancer susceptibility and centrosome dysfunction.
    Nat Genet (7 October 2007)
    by Miguel Angel A Pujana, Jing-Dong J D Han, Lea M M Starita, Kristen N N Stevens, Muneesh Tewari, Jin Sook S Ahn, Gad Rennert, Víctor Moreno, Tomas Kirchhoff, Bert Gold, Volker Assmann, Wael M M Elshamy, Jean-François F Rual, Douglas Levine, Laura S S Rozek, Rebecca S S Gelman, Kristin C C Gunsalus, Roger A A Greenberg, Bijan Sobhian, Nicolas Bertin, Kavitha Venkatesan, Nono Ayivi-Guedehoussou, Xavier Solé, Pilar Hernández, Conxi Lázaro, Katherine L L Nathanson, Barbara L L Weber, Michael E E Cusick, David E E Hill, Kenneth Offit, David M M Livingston, Stephen B B Gruber, Jeffrey D D Parvin, Marc Vidal
    posted to heterogeneous-data-sources systems-biology by nedwards on 2008-04-16 13:37:14 as ** along with 5 people and 1 group jfr ealloza cjeans jdiezperezj phoenixzxl BioinfoCIPF
  • A framework of integrating gene relations from heterogeneous data sources: an experiment on Arabidopsis thaliana.
    Bioinformatics, Vol. 22, No. 16. (15 August 2006), pp. 2037-2043.
    by J Li, X Li, H Su, H Chen, DW Galbraith
    posted to heterogeneous-data-sources systems-biology by nedwards on 2008-04-10 17:50:31 as ** along with 2 people jyuh balajis
  • A thematic review series: systems biology approaches to metabolic and cardiovascular disorders
    J. Lipid Res., Vol. 47, No. 9. (1 September 2006), pp. 1887-1890.
    by Aldons J Lusis
    posted to metabolomics systems-biology by nedwards on 2008-04-10 17:49:59 as **
  • Context-sensitive data integration and prediction of biological networks
    Bioinformatics, Vol. 23, No. 17. (1 September 2007), pp. 2322-2330.
    by Chad L Myers, Olga G Troyanskaya
    posted to heterogeneous-data-sources systems-biology by nedwards on 2008-04-10 17:48:56 as ** along with 6 people jyuh tmmurali rdiaz grahamc iris_2001 shung
  • Current progress in network research: toward reference networks for key model organisms.
    Brief Bioinform (29 August 2007)
    by Balaji S S Srinivasan, Nigam H H Shah, Jason A A Flannick, Eduardo Abeliuk, Antal F F Novak, Serafim Batzoglou
    posted to heterogeneous-data-sources protein-protein-interactions systems-biology by nedwards on 2008-04-10 17:46:46 as ** along with 3 people and 1 group jyuh grahamc roys Bioinformatics
  • Beyond the 'best' match: machine learning annotation of protein sequences by integration of different sources of information
    Bioinformatics, Vol. 24, No. 5. (1 March 2008), pp. 621-628.
    by Igor V Tetko, Igor V Rodchenkov, Mathias C Walter, Thomas Rattei, Hans-Werner Mewes
    posted to heterogeneous-data-sources systems-biology by nedwards on 2008-04-10 17:44:42 as ** along with 1 person gongScience
  • Whole-genome annotation by using evidence integration in functional-linkage networks.
    Proc Natl Acad Sci U S A, Vol. 101, No. 9. (2 March 2004), pp. 2888-2893.
    by U Karaoz, TM Murali, S Letovsky, Y Zheng, C Ding, CR Cantor, S Kasif
    posted to systems-biology by nedwards on 2008-04-10 17:43:26 as ** along with 2 people and 1 group shivaram lfriedl kdl
  • Significance analysis of functional categories in gene expression studies: a structured permutation approach
    Bioinformatics, Vol. 21, No. 9. (1 May 2005), pp. 1943-1949.
    by William T Barry, Andrew B Nobel, Fred A Wright
    posted to statistical-significance systems-biology by nedwards on 2008-04-10 17:42:24 as ** along with 3 people and 1 group ealloza jdiggans heliopais BioinfoCIPF
  • Getting connected: analysis and principles of biological networks.
    Genes Dev, Vol. 21, No. 9. (1 May 2007), pp. 1010-1024.
    by X Zhu, M Gerstein, M Snyder
    posted to systems-biology by nedwards on 2008-04-10 17:41:26 as ** along with 7 people jfr balajis grahamc fishtank naegele Evangelia kristen
  • A Bayesian framework for combining heterogeneous data sources for gene function prediction (in Saccharomyces cerevisiae).
    Proc Natl Acad Sci U S A, Vol. 100, No. 14. (8 July 2003), pp. 8348-8353.
    by OG Troyanskaya, K Dolinski, AB Owen, RB Altman, D Botstein
    posted to heterogeneous-data-sources systems-biology by nedwards on 2008-04-10 17:39:32 as ** along with 12 people and 2 groups BioGeek serak dragonrez okarsligil lfriedl balajis eckart_bindewald eweaver luispedro opheliav wnpx Evangelia kdl Bioinformatics
  • Multiple spaced seeds for homology search.
    Bioinformatics (5 September 2007)
    by Lucian Ilie, Silvana Ilie
    posted to gapped-seeds seed-strategies sequence-alignment by nedwards on 2008-04-08 15:04:17 as ** along with 2 people treangen cjeans
  • RAId DbS: Peptide Identification using Database Searches with Realistic Statistics
    Biology Direct, Vol. 2 (25 October 2007), 25.
    by Gelio Alves, Aleksey Y Ogurtsov, Yi-Kuo Yu
    posted to peptide-identification proteomics tandem-mass-spectrometry by nedwards on 2008-04-02 19:39:57 as **
  • Calibrating E-values for MS2 database search methods
    Biology Direct, Vol. 2 (05 November 2007), 26.
    by Gelio Alves, Aleksey Y Ogurtsov, Wells W Wu, Guanghui Wang, Rong-Fong Shen, Yi-Kuo Yu
    posted to peptide-identification peptide-identification-statistics proteomics tandem-mass-spectrometry by nedwards on 2008-04-02 19:37:35 as **
  • Online Microwave D-Cleavage LC-ESI-MS/MS of Intact Proteins: Site-Specific Cleavages at Aspartic Acid Residues and Disulfide Bonds
    J. Proteome Res., Vol. 7, No. 3. (7 March 2008), pp. 1012-1026.
    by Nicolas J Hauser, Franco Basile
    posted to acid-cleavage proteomics tandem-mass-spectrometry by nedwards on 2008-03-24 18:44:55 as **
  • An assessment of software solutions for the analysis of mass spectrometry based quantitative proteomics data.
    J Proteome Res, Vol. 7, No. 1. (January 2008), pp. 51-61.
    by LN Mueller, MY Brusniak, DR Mani, R Aebersold
    posted to mass-spectrometry protein-quantitation proteomics by nedwards on 2008-03-24 16:38:32 as ** along with 3 people jyuh raiyar olberd
  • Identification of beta-Lactamase in Antibiotic-Resistant Bacillus cereus Spores
    Appl. Environ. Microbiol., Vol. 74, No. 3. (1 February 2008), pp. 904-906.
    by Catherine Fenselau, Crystal Havey, Nuttinee Teerakulkittipong, Stephen Swatkoski, Olli Laine, Nathan Edwards
    posted to antibiotic-resistance bacillus proteomics by nedwards on 2008-02-01 20:05:29 as **
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