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natstreet's Yang [44 articles]

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  • Genomewide comparative phylogenetic and molecular evolutionary analysis of tubby-like protein family in Arabidopsis, rice, and poplar.
    Genomics (9 July 2008)
    by Zefeng Yang, Yong Zhou, Xuefeng Wang, Shiliang Gu, Jianmin Yu, Guohua Liang, Changjie Yan, Chenwu Xu
    posted to no-tag by natstreet on 2008-07-17 09:10:16 as **
  • Cross-platform comparison of SYBR Green real-time PCR with TaqMan PCR, microarrays and other gene expression measurement technologies evaluated in the MicroArray Quality Control (MAQC) study
    BMC Genomics, Vol. 9 (11 July 2008), 328.
    by Emi Arikawa, Yanyang Sun, Jie Wang, Qiong Zhou, Baitang Ning, Stacey L Dial, Lei Guo, Jingping Yang
    posted to no-tag by natstreet on 2008-07-15 07:31:13 as ** along with 3 people GeeSharpMinor ChrisEvelo jyuh
  • The Genome of Black Cottonwood, Populus trichocarpa (Torr. & Gray)
    Science, Vol. 313, No. 5793. (15 September 2006), pp. 1596-1604.
    posted to popgenie-ms by natstreet on 2008-06-06 17:39:57 as ** along with 1 person kathrynmrobinson
  • Variations in DNA elucidate molecular networks that cause disease
    Nature (16 March 2008)
    by Yanqing Chen, Jun Zhu, Pek Y Lum, Xia Yang, Shirly Pinto, Douglas J Macneil, Chunsheng Zhang, John Lamb, Stephen Edwards, Solveig K Sieberts, Amy Leonardson, Lawrence W Castellini, Susanna Wang, Marie-France Champy, Bin Zhang, Valur Emilsson, Sudheer Doss, Anatole Ghazalpour, Steve Horvath, Thomas A Drake, Aldons J Lusis, Eric E Schadt
  • Divergence of the Dof Gene Families in Poplar, Arabidopsis, and Rice Suggests Multiple Modes of Gene Evolution after Duplication
    Plant Physiol., Vol. 142, No. 3. (1 November 2006), pp. 820-830.
    by Xiaohan Yang, Gerald A Tuskan, (max) Z Cheng
    posted to no-tag by natstreet on 2008-05-12 17:32:42 as **
  • ArrayFusion: a web application for multi-dimensional analysis of CGH, SNP and microarray data
    Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2697-2698.
    posted to no-tag by natstreet on 2008-04-16 08:10:59 as **
  • Sex-specific responses of Populus cathayana to drought and elevated temperatures.
    Plant Cell Environ (13 February 2008)
    by Xiao Xu, Fan Yang, Xiangwen Xiao, Sheng Zhang, Helena Korpelainen, Chunyang Li
    posted to no-tag by natstreet on 2008-02-25 10:23:36 as **
  • A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation
    The Plant Journal, Vol. 50, No. 6. (June 2007), pp. 1063-1078.
    posted to no-tag by natstreet on 2008-02-19 14:31:47 as **
  • Functional diversity of miRNA in plants
    Plant Science, Vol. 172, No. 3. (March 2007), pp. 423-432.
    by Tongwen Yang, Lingui Xue, Lizhe An
    posted to no-tag by natstreet on 2008-01-14 16:43:55 as ** along with 1 person TaqSys
  • Recent developments in primer design for DNA polymorphism and mRNA profiling in higher plants
    Plant Methods, Vol. 2 (01 March 2006), 4.
    by Xiaohan Yang, Brian E Scheffler, Leslie A Weston
    posted to no-tag by natstreet on 2007-12-04 10:17:52 as **
  • An integrative genomics approach to infer causal associations between gene expression and disease
    Nature Genetics, Vol. 37, No. 7. (19 June 2005), pp. 710-717.
    by Eric E Schadt, John Lamb, Xia Yang, Jun Zhu, Steve Edwards, Debraj Guhathakurta, Solveig K Sieberts, Stephanie Monks, Marc Reitman, Chunsheng Zhang, Pek Y Lum, Amy Leonardson, Rolf Thieringer, Joseph M Metzger, Liming Yang, John Castle, Haoyuan Zhu, Shera F Kash, Thomas A Drake, Alan Sachs, Aldons J Lusis
  • Mapping the genetic architecture of complex traits in experimental populations
    Bioinformatics, Vol. 23, No. 12. (15 June 2007), pp. 1527-1536.
    by Jian Yang, Jun Zhu, Robert W Williams
    posted to no-tag by natstreet on 2007-08-20 16:51:33 as ** along with 1 person jyuh
  • Characterization of a Ca2+-dependent protein kinase from rice root: Differential response to cold and regulation by abscisic acid
    Biological & Pharmaceutical Bulletin, Vol. 24, No. 11. (2001), pp. 1316-1319.
    by S Komatsu, WG Li, H Konishi, M Yoshikawa, T Konishi, GX Yang
  • A physical map of the highly heterozygous Populus genome: integration with the genome sequence and genetic map and analysis of haplotype variation
    The Plant Journal, Vol. 50, No. 6. (2007), pp. 1063-1078.
    by Colin T Kelleher, Readman Chiu, Heesun Shin, Ian E Bosdet, Martin I Krzywinski, Chris D Fjell, Jennifer Wilkin, Tongming Yin, Stephen P Difazio, Johar Ali, Jennifer K Asano, Susanna Chan, Alison Cloutier, Noreen Girn, Stephen Leach, Darlene Lee, Carrie A Mathewson, Teika Olson, Katie O Connor, Anna L Prabhu, Duane E Smailus, Jeffery M Stott, Miranda Tsai, Natasja H Wye, George S Yang, Jun Zhuang, Robert A Holt, Nicholas H Putnam, Julia Vrebalov, James J Giovannoni, Jane Grimwood, Jeremy Schmutz, Daniel Rokhsar, Steven JM Jones, Marco A Marra, Gerald A Tuskan
    posted to bibtex-import by natstreet on 2007-07-26 18:28:26 as read
  • Rapid and reliable extraction of genomic DNA from various wild-type and transgenic plants
    BMC Biotechnology, Vol. 4, No. 1. (2004)
    by Tae J Kang, Moon S Yang
    posted to bibtex-import by natstreet on 2007-07-26 18:28:25 as read
  • Activation of the NaCl- and drought-induced RD29A and RD29B promoters by constitutively active Arabidopsis MAPKK or MAPK proteins
    Vol. 29, No. 9. (2006), pp. 1761-1770.
    by Zhi M Hua, Xianci Yang, Michael E Fromm
    posted to bibtex-import by natstreet on 2007-07-26 18:28:08 as read
  • Bioconductor: open software development for computational biology and bioinformatics
    Genome Biology, Vol. 5, No. 10. (2004), R80.
    by Robert Gentleman, Vincent Carey, Douglas Bates, Ben Bolstad, Marcel Dettling, Sandrine Dudoit, Byron Ellis, Laurent Gautier, Yongchao Ge, Jeff Gentry, Kurt Hornik, Torsten Hothorn, Wolfgang Huber, Stefano Iacus, Rafael Irizarry, Friedrich Leisch, Cheng Li, Martin Maechler, Anthony Rossini, Gunther Sawitzki, Colin Smith, Gordon Smyth, Luke Tierney, Jean Yang, Jianhua Zhang
    posted to o3-paper by natstreet on 2007-07-26 18:28:01 as read
  • Global analysis of stress-regulated mRNA turnover by using cDNA arrays
    Proc Natl Acad Sci U S A, Vol. 99, No. 16. (2002), pp. 10611-6.
    by J Fan, X Yang, W Wang, 3rd, KG Becker, M Gorospe
  • Statistical methods for identifying differentially expressed genes in replicated cDNA microarray experiments
    Statistica Sinica, Vol. 12, No. 1. (2002), pp. 111-139.
    by S Dudoit, YH Yang, MJ Callow, TP Speed
  • Bioconductor R packages for exploratory analysis and normalization of cDNA microarray data
    (2002)
    by S Dudoit, YH Yang
    posted to papper bibtex-import by natstreet on 2007-07-26 18:25:47 as read
  • Plasma membrane-associated ROP10 small GTPase is a specific negative regulator of abscisic acid responses in Arabidopsis
    Plant Cell, Vol. 14, No. 11. (2002), pp. 2787-2797.
    by ZL Zheng, M Nafisi, A Tam, H Li, DN Crowell, SN Chary, JI Schroeder, JJ Shen, ZB Yang
  • QTL analysis of growth and wood chemical content traits in an interspecific backcross family of white poplar (Populus tomentosa x P-bolleana) x P-tomentosa
    Canadian Journal of Forest Research-Revue Canadienne De Recherche Forestiere, Vol. 36, No. 8. (2006), pp. 2015-2023.
    by D Zhang, Z Zhang, K Yang
    posted to bibtex-import by natstreet on 2007-07-26 18:24:28 as read
  • Design issues for cDNA microarray experiments
    Nat Rev Genet, Vol. 3, No. 8. (2002), pp. 579-88.
    by YH Yang, T Speed
  • Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation
    Nucleic Acids Res, Vol. 30, No. 4. (2002)
    by YH Yang, S Dudoit, P Luu, DM Lin, V Peng, J Ngai, TP Speed
  • Analysis of cDNA microarray images
    Brief Bioinform, Vol. 2, No. 4. (2001), pp. 341-9.
    by YH Yang, MJ Buckley, TP Speed
  • Comparison of methods for image analysis on cDNA microarray data
    Journal of Computational and Graphical Statistics, Vol. 11, No. 1. (2002), pp. 108-136.
    by YH Yang, MJ Buckley, S Dudoit, TP Speed
  • Mapping quantitative trait loci for longitudinal traits in line crosses
    Genetics, Vol. 173, No. 4. (2006), pp. 2339-2356.
    by RQ Yang, Q Tian, SZ Xu
    posted to bibtex-import by natstreet on 2007-07-26 18:24:26 as read
  • Microarray experimental design: power and sample size considerations
    Physiol. Genomics (2003)
    by Mark, James J Yang, Richard A Mcindoe, Jin X She
    posted to bibtex-import by natstreet on 2007-07-26 18:24:26 as read
  • A statistical method for flagging weak spots improves normalization and ratio estimates in microarrays
    Physiol Genomics, Vol. 7, No. 1. (2001), pp. 45-53.
    by MC Yang, QG Ruan, JJ Yang, S Eckenrode, S Wu, RA Mcindoe, JX She
  • [4] Use of External Controls in Microarray Experiments
    Vol. Volume 411 (2006), pp. 50-63.
    by Ivana V Yang, Alan Kimmel, Oliver Brian
    posted to bibtex-import by natstreet on 2007-07-26 18:24:26 as read
  • Within the fold: assessing differential expression measures and reproducibility in microarray assays
    Genome Biol, Vol. 3, No. 11. (2002)
    by IV Yang, E Chen, JP Hasseman, W Liang, BC Frank, S Wang, V Sharov, AI Saeed, J White, J Li, NH Lee, TJ Yeatman, J Quackenbush
    posted to bibtex-import by natstreet on 2007-07-26 18:24:26 as read
  • Within the fold: assessing differential expression measures and reproducibility in microarray assays
    Genome Biology, Vol. 3, No. 11. (2002)
    by Ivana Yang, Emily Chen, Jeremy Hasseman, Wei Liang, Bryan Frank, Shuibang Wang, Vasily Sharov, Alexander Saeed, Joseph White, Jerry Li, Norman Lee, Timothy Yeatman, John Quackenbush
    posted to bibtex-import by natstreet on 2007-07-26 18:24:26 as read
  • The photosynthetic characteristics of differently shaped leaves in Populus euphratica Olivier
    Photosynthetica, Vol. 34, No. 4. (1997), pp. 545-553.
    by HL Wang, SD Yang, CL Zhang
  • Within-population variation in demography of Taraxacum officinale: Maintenance of genetic diversity
    Ecology, Vol. 77, No. 7. (1996), pp. 2098-2107.
    by MC Vavrek, JB Mcgraw, HS Yang
    posted to bibtex-import by natstreet on 2007-07-26 18:24:05 as read
  • Characterization of microsatellites revealed by genomic sequencing of Populus trichocarpa
    Canadian Journal of Forest Research-Revue Canadienne De Recherche Forestiere, Vol. 34, No. 1. (2004), pp. 85-93.
    by GA Tuskan, LE Gunter, ZMK Yang, TM Yin, MM Sewell, SP Difazio
  • The CLAVATA1 receptor-like kinase requires CLAVATA3 for its assembly into a signaling complex that includes KAPP and a Rho- related protein
    Plant Cell, Vol. 11, No. 3. (1999), pp. 393-405.
    by AE Trotochaud, T Hao, G Wu, ZB Yang, SE Clark
  • Direct versus indirect designs for cDNA microarray experiments
    (2002)
    by TP Speed, YH Yang
  • Statistical Issues in cDNA Microarray Data Analysis
    (2002)
    by GK Smyth, YH Yang, T Speed
    posted to papper bibtex-import by natstreet on 2007-07-26 18:23:54 as read
  • An integrative genomics approach to infer causal associations between gene expression and disease
    Nat Genet, Vol. 37, No. 7. (2005), pp. 710-717.
    by Eric E Schadt, John Lamb, Xia Yang, Jun Zhu, Steve Edwards, Debraj Guhathakurta, Solveig K Sieberts, Stephanie Monks, Marc Reitman, Chunsheng Zhang, Pek Y Lum, Amy Leonardson, Rolf Thieringer, Joseph M Metzger, Liming Yang, John Castle, Haoyuan Zhu, Shera F Kash, Thomas A Drake, Alan Sachs, Aldons J Lusis
    posted to bibtex-import by natstreet on 2007-07-26 18:23:30 as read
  • Global variation in copy number in the human genome
    Nature, Vol. 444, No. 7118. (2006), pp. 444-454.
    by Richard Redon, Shumpei Ishikawa, Karen R Fitch, Lars Feuk, George H Perry, Daniel T Andrews, Heike Fiegler, Michael H Shapero, Andrew R Carson, Wenwei Chen, Eun K Cho, Stephanie Dallaire, Jennifer L Freeman, Juan R Gonzalez, Monica Gratacos, Jing Huang, Dimitrios Kalaitzopoulos, Daisuke Komura, Jeffrey R Macdonald, Christian R Marshall, Rui Mei, Lyndal Montgomery, Kunihiro Nishimura, Kohji Okamura, Fan Shen, Martin J Somerville, Joelle Tchinda, Armand Valsesia, Cara Woodwark, Fengtang Yang, Junjun Zhang, Tatiana Zerjal, Jane Zhang, Lluis Armengol, Donald F Conrad, Xavier Estivill, Chris T Smith, Nigel P Carter, Hiroyuki Aburatani, Charles Lee, Keith W Jones, Stephen W Scherer, Matthew E Hurles
    posted to bibtex-import by natstreet on 2007-07-26 18:22:52 as read
  • Genomics of hybrid poplar (Populus trichocarpa x deltoides) interacting with forest tent caterpillars (Malacosoma disstria): normalized and full-length cDNA libraries, expressed sequence tags, and a cDNA microarray for the study of insect-induced defences in poplar
    Molecular Ecology, Vol. 15, No. 5. (2006), pp. 1275-1297.
    by Steven Ralph, Claire Oddy, Dawn Cooper, Hesther Yueh, Sharon Jancsik, Natalia Kolosova, Ryan N Philippe, Dana Aeschliman, Rick White, Dezene Huber, Carol E Ritland, Francois Benoit, Tracey Rigby, Andre Nantel, Yaron SN Butterfield, Robert Kirkpatrick, Elizabeth Chun, Jerry Liu, Diana Palmquist, Brian Wynhoven, Jeffrey Stott, George Yang, Sarah Barber, Robert A Holt, Asim Siddiqui, Steven JM Jones, Marco A Marra, Brian E Ellis, Carl J Douglas, Kermit Ritland, Jorg Bohlmann
    posted to popgenie-ms by natstreet on 2007-07-26 18:22:50 as read
  • Zipf's Law in Importance of Genes for Cancer Classification Using Microarray Data
    J Theor Biol, Vol. 219, No. 4. (2002), pp. 539-551.
    by W Li, Y Yang
    posted to bibtex-import by natstreet on 2007-07-26 18:22:20 as read
  • HOW MANY GENES ARE NEEDED FOR A DISCRIMINANT MICROARRAY DATA ANALYSIS
    by W Li, Y Yang
  • QTL analysis of growth and wood chemical content traits in an interspecific backcross family of white poplar (Populus tomentosa P. bolleana) P. tomentosa
    Canadian Journal of Forest Research, Vol. 36, No. 8. (1 August 2006), pp. 2015-2023.
    posted to poplar qtl wood by natstreet on 2007-07-26 15:39:51 as read
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