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mtagaya's 关注列表 [1000+ articles]

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  • A toolkit for analysing large-scale plant small RNA datasets
    Bioinformatics (19 August 2008), btn428.
    by Simon Moxon, Frank Schwach, Dan Maclean, Tamas Dalmay, David J Studholme, Vincent Moulton
    posted to tools microrna by heliopais on 2008-08-21 19:40:03 as ** along with 1 group microRNA
  • mirWIP: microRNA target prediction based on microRNA-containing ribonucleoprotein-enriched transcripts.
    Nature methods (17 August 2008)
    by Molly Hammell, Dang Long, Liang Zhang, Andrew Lee, C Steven S Carmack, Min Han, Ye Ding, Victor Ambros
    posted to target prediction microrna by maralena on 2008-08-21 08:45:24 as **
  • Characterization of microRNA-regulated protein-protein interaction network.
    Proteomics, Vol. 8, No. 10. (19 May 2008), pp. 1975-1979.
    by Chun-Wei W Hsu, Hsueh-Fen F Juan, Hsuan-Cheng C Huang
    posted to ppi network microrna by maralena on 2008-08-19 09:42:42 as ** along with 2 people daforerog cabbagesofdoom
  • Epigenetic Silencing of MicroRNA-34b/c and B-Cell Translocation Gene 4 Is Associated with CpG Island Methylation in Colorectal Cancer
    Cancer Res, Vol. 68, No. 11. (1 June 2008), pp. 4123-4132.
    by Minoru Toyota, Hiromu Suzuki, Yasushi Sasaki, Reo Maruyama, Kohzoh Imai, Yasuhisa Shinomura, Takashi Tokino
    posted to mir-34 microrna epigenetic cancer by maralena on 2008-08-19 09:38:05 as **
  • Epigenetic silencing of the intronic microRNA hsa-miR-342 and its host gene EVL in colorectal cancer
    Oncogene, Vol. aop, No. current.
    by WM Grady, RK Parkin, PS Mitchell, JH Lee, YH Kim, KD Tsuchiya, MK Washington, C Paraskeva, JKV Willson, AM Kaz, EM Kroh, A Allen, BR Fritz, SD Markowitz, M Tewari
    posted to mir-342 microrna human evl epigentic cancer by maralena on 2008-08-19 09:24:54 as ** along with 1 person bootsy
  • An intronic microRNA silences genes that are functionally antagonistic to its host gene
    Nucl. Acids Res. (6 August 2008), gkn513.
    by Sailen Barik
    posted to microrna intronic host by maralena on 2008-08-18 08:37:00 as ** along with 3 people megraw bootsy daforerog
  • A cyclin D1/microRNA 17/20 regulatory feedback loop in control of breast cancer cell proliferation.
    The Journal of cell biology, Vol. 182, No. 3. (11 August 2008), pp. 509-517.
    by Z Yu, C Wang, M Wang, Z Li, MC Casimiro, M Liu, K Wu, J Whittle, X Ju, T Hyslop, P McCue, RG Pestell
    posted to proliferation mir-20 mir-17 microrna feedback cyclin cluster cancer by maralena on 2008-08-18 08:33:14 as **
  • Computational analysis of miRNA-mediated repression of translation: implications for models of translation initiation inhibition.
    RNA (New York, N.Y.), Vol. 14, No. 8. (August 2008), pp. 1480-1491.
    by T Nissan, R Parker
    posted to repression model microrna by pengchy on 2008-08-17 03:55:29 as ** along with 1 person erel10
  • Connecting microRNA Genes to the Core Transcriptional Regulatory Circuitry of Embryonic Stem Cells
    Cell, Vol. 134, No. 3. (8 August 2008), pp. 521-533.
    by Alexander Marson, Stuart S Levine, Megan F Cole, Garrett M Frampton, Tobias Brambrink, Sarah Johnstone, Matthew G Guenther, Wendy K Johnston, Marius Wernig, Jamie Newman, Mauro J Calabrese, Lucas M Dennis, Thomas L Volkert, Sumeet Gupta, Jennifer Love, Nancy Hannett, Phillip A Sharp, David P Bartel, Rudolf Jaenisch, Richard A Young
    posted to transcriptional_factor microrna by pengchy on 2008-08-17 03:24:13 as ** along with 4 people bootsy gdb megraw maralena
  • An integrative genomic approach reveals coordinated expression of intronic miR-335, miR-342, and miR-561 with deregulated host genes in multiple myeloma
    BMC Medical Genomics, Vol. 1, No. 1. (2008)
    by Domenica Ronchetti, Marta Lionetti, Laura Mosca, Luca Agnelli, Adrian Andronache, Sonia Fabris, Giorgio L Deliliers, Antonino Neri
    posted to microrna by pengchy on 2008-08-17 02:47:18 as ***
  • Small RNAs encoded within genetic islands of Salmonella typhimurium show host-induced expression and role in virulence
    Nucl. Acids Res., Vol. 36, No. 6. (1 April 2008), pp. 1913-1927.
    by Gilly Padalon-Brauch, Ruth Hershberg, Maya Elgrably-Weiss, Kobi Baruch, Ilan Rosenshine, Hanah Margalit, Shoshy Altuvia
    posted to salmonella ncrna by eskay on 2008-08-16 21:36:36 as *** along with 1 person smbe2008
  • Cancer-associated genomic regions (CAGRs) and noncoding RNAs: bioinformatics and therapeutic implications
    Mammalian Genome
    by Simona Rossi, Cinzia Sevignani, Stephanie Nnadi, Linda Siracusa, George Calin
    posted to ncrna mirna cancer by eskay on 2008-08-16 21:27:48 as **
  • RNA silencing and genome regulation
    Trends in Cell Biology, Vol. 15, No. 5. (May 2005), pp. 251-258.
    by Ricardo Almeida, Robin C Allshire
    posted to silencing rna regulation ncrna mirna by eskay on 2008-08-15 16:23:29 as *****
  • Exploration of Small RNAs
    PLoS Genetics, Vol. 4, No. 1. (1 January 2008), e22.
    by Hideya Kawaji, Yoshihide Hayashizaki
    posted to review ncrna by eskay on 2008-08-15 16:03:11 as *** along with 1 person GeeSharpMinor
  • Controlling mRNA stability and translation with small, noncoding RNAs
    Current Opinion in Microbiology, Vol. 7, No. 2. (April 2004), pp. 140-144.
    by Gisela Storz, Jason A Opdyke, Aixia Zhang
    posted to srna ncrna ecoli by eskay on 2008-08-15 14:34:57 as *** along with 1 person danadewey
  • Principles of microRNA regulation of a human cellular signaling network
    (18 Dec 2006)
    by Qinghua Cui, Zhenbao Yu, Enrico O Purisima, Edwin Wang
    posted to networks microrna by heliopais on 2008-08-11 10:57:21 as ** along with 1 group microRNA
  • Core transcriptional regulatory circuitry in human embryonic stem cells.
    Cell, Vol. 122, No. 6. (23 September 2005), pp. 947-956.
    by LA Boyer, TI Lee, MF Cole, SE Johnstone, SS Levine, JP Zucker, MG Guenther, RM Kumar, HL Murray, RG Jenner, DK Gifford, DA Melton, R Jaenisch, RA Young
    posted to young transcription stem regulation microrna by Stew on 2008-08-08 14:06:36 as ** along with 13 people kengg dquest brant rklancer kentsis tardigrade balicea tabu cconboy koller faisalm mikaelhuss tdmckee
  • Characterization and Identification of MicroRNA Core Promoters in Four Model Species.
    PLoS Comput Biol, Vol. 3, No. 3. (9 March 2007)
    by Xuefeng Zhou, Jianhua Ruan, Guandong Wang, Weixiong Zhang
    posted to microrna by xili03 on 2008-08-07 07:40:37 as ** along with 7 people and 2 groups bootsy jfr tardigrade andersbj cdawson ale maralena microRNA GIG
  • Comparative Sequence Analysis Reveals an Intricate Network Among REST, CREB and miRNA in Mediating Neuronal Gene Expression
    Genome Biology, Vol. 7 (26 September 2006), R85.
    by Jie Wu, Xiaohui Xie
    posted to microrna by xili03 on 2008-08-07 07:38:34 as ** along with 4 people and 1 group bootsy maralena diancu heliopais microRNA
  • Significant sequence similarities in promoters and precursors of Arabidopsis thaliana non-conserved microRNAs
    Bioinformatics, Vol. 22, No. 21. (1 November 2006), pp. 2585-2589.
    by Wang, Yu, Hindemitt, Tobias, Mayer, FX Klaus
    posted to microrna by xili03 on 2008-08-07 07:29:39 as **
  • MicroRNA promoter element discovery in Arabidopsis.
    RNA (3 August 2006)
    by Molly Megraw, Vesselin Baev, Ventsislav Rusinov, Shane T T Jensen, Kriton Kalantidis, Artemis G G Hatzigeorgiou
    posted to microrna by xili03 on 2008-08-07 07:12:33 as ** along with 6 people and 1 group maralena bootsy tardigrade cdawson byy ale GIG
  • Micromanagers of malignancy: role of microRNAs in regulating metastasis.
    Trends in genetics : TIG (30 July 2008)
    by Li Ma, Robert A A Weinberg
    posted to microrna metastasis cancer by maralena on 2008-08-06 08:32:16 as **
  • MicroRNA-encoding long non-coding RNAs
    BMC Genomics, Vol. 9 (21 May 2008), 236.
    by Shunmin He, Hua Su, Changning Liu, Geir Skogerbo, Housheng He, Dandan He, Xiaopeng Zhu, Tao Liu, Yi Zhao, Runsheng Chen
    posted to ncrna mirna by daforerog on 2008-08-05 12:58:47 as ** along with 3 people jfr biozy ealloza
  • MicroRNAs accurately identify cancer tissue origin.
    Nat Biotechnol (23 March 2008)
    by Nitzan Rosenfeld, Ranit Aharonov, Eti Meiri, Shai Rosenwald, Yael Spector, Merav Zepeniuk, Hila Benjamin, Norberto Shabes, Sarit Tabak, Asaf Levy, Danit Lebanony, Yaron Goren, Erez Silberschein, Nurit Targan, Alex Ben-Ari, Shlomit Gilad, Netta Sion-Vardy, Ana Tobar, Meora Feinmesser, Oleg Kharenko, Ofer Nativ, Dvora Nass, Marina Perelman, Ady Yosepovich, Bruria Shalmon, Sylvie Polak-Charcon, Eddie Fridman, Amir Avniel, Isaac Bentwich, Zvi Bentwich, Dalia Cohen, Ayelet Chajut, Iris Barshack
    posted to signatures microrna cancer_biology by srp33 on 2008-08-04 18:31:39 as ** along with 8 people jfr bootsy ealloza jyuh giovenko tmmurali jdiezperezj maralena
  • The impact of microRNAs on protein output
    Nature (30 July 2008)
    by Daehyun Baek, Judit Villã©n, Chanseok Shin, Fernando D Camargo, Steven P Gygi, David P Bartel
    posted to microrna by maralena on 2008-08-04 08:52:25 as ** along with 6 people caizhiqiang gdb brianb ajaymalik erel10 emptyhb
  • The role of microRNAs in cancer: No small matter.
    Eur J Cancer (23 May 2007)
    by Erik A C A Wiemer
    posted to microrna cancer_biology by srp33 on 2008-07-30 23:09:05 as ** along with 3 people maralena tardigrade ishak
  • The role of microRNAs in cancer: No small matter
    European Journal of Cancer, Vol. 43, No. 10. (July 2007), pp. 1529-1544.
    by Erik A Wiemer
    posted to microrna cancer_biology by srp33 on 2008-07-30 23:04:09 as ** along with 4 people and 1 group ealloza cerami maralena mdphillips BioinfoCIPF
  • MicroRNA signatures in human cancers
    Nature Reviews Cancer, Vol. 6, No. 11., pp. 857-866.
    by George A Calin, Carlo M Croce
    posted to microrna cancer_biology by srp33 on 2008-07-30 18:50:27 as ** along with 4 people maralena jfr tardigrade dchughes
  • MicroRNA epigenetic alterations in human cancer: one step forward in diagnosis and treatment.
    Int J Cancer, Vol. 122, No. 5. (1 March 2008), pp. 963-968.
    by N Yang, G Coukos, L Zhang
    posted to microrna epigenetics cancer_biology by srp33 on 2008-07-30 18:27:52 as ** along with 2 people and 1 group maralena frohike Bioinformatics
  • The nuclear RNase III Drosha initiates microRNA processing.
    Nature, Vol. 425, No. 6956. (25 September 2003), pp. 415-419.
    by Y Lee, C Ahn, J Han, H Choi, J Kim, J Yim, J Lee, P Provost, O Rådmark, S Kim, VN Kim
    posted to microrna drosha biogenesis by tolot27 on 2008-07-29 16:16:17 as ** along with 1 person ecattell
  • Mammalian mirtron genes.
    Mol Cell, Vol. 28, No. 2. (26 October 2007), pp. 328-336.
    by E Berezikov, WJ Chung, J Willis, E Cuppen, EC Lai
    posted to mirtron microrna by tolot27 on 2008-07-29 16:02:48 as ** along with 4 people hpaces ale dchughes cabbagezs
  • MicroRNA-directed regulation: to cleave or not to cleave.
    Trends in plant science (21 May 2008)
    by Allison C C Mallory, Nicolas Bouché
    posted to microrna_modes_of_action microrna by heliopais on 2008-07-29 12:28:46 as *** along with 1 person and 1 group YERRAPRAGADA microRNA
  • MicroRNAs - Genomics, Biogenesis, Mechanism, and Function
    Cell, Vol. 116, No. 2. (23 January 2004), pp. 281-297.
    by DP Bartel
    posted to sirna review mirna microrna genomics by xico on 2008-07-29 00:41:41 as ** along with 3 people and 1 group ealloza bsamal cdawson GIG
  • Identification of microRNAs of the herpesvirus family
    Nature Methods, Vol. 2, No. 4. (16 February 2005), pp. 269-276.
    by Sébastien Pfeffer, Alain Sewer, Mariana Lagos-Quintana, Robert Sheridan, Chris Sander, Friedrich A Grässer, Linda F van Dyk, Kiong C Ho, Stewart Shuman, Minchen Chien, James J Russo, Jingyue Ju, Glenn Randall, Brett D Lindenbach, Charles M Rice, Viviana Simon, David D Ho, Mihaela Zavolan, Thomas Tuschl
    posted to microrna mhv68 kshv herpesvirus by Pezda on 2008-07-28 23:53:58 as **
  • Embryonic stem cell-specific MicroRNAs.
    Developmental cell, Vol. 5, No. 2. (August 2003), pp. 351-358.
    by HB Houbaviy, MF Murray, PA Sharp
    posted to mirna mir292 microrna by sebastien_vigneau on 2008-07-25 19:24:20 as read
  • Characterization of a highly variable eutherian microRNA gene.
    RNA (New York, N.Y.), Vol. 11, No. 8. (August 2005), pp. 1245-1257.
    by HB Houbaviy, L Dennis, R Jaenisch, PA Sharp
    posted to mirna mir292 microrna by sebastien_vigneau on 2008-07-25 19:18:11 as read
  • Genomic Organization, Differential Expression, and Interaction of SQUAMOSA Promoter-Binding-Like Transcription Factors and microRNA156 in Rice
    Plant Physiol., Vol. 142, No. 1. (1 September 2006), pp. 280-293.
    by Kabin Xie, Congqing Wu, Lizhong Xiong
    posted to tf microrna by icq242500260 on 2008-07-25 13:33:54 as **
  • The eukaryotic genome as an RNA machine
    Science, Vol. 319, No. 5871. (28 March 2008), pp. 1787-1789.
    by Paulo P Amaral, Marcel E Dinger, Tim R Mercer, John S Mattick
    posted to transcription_regulation regulation ncrna mirna by siebert on 2008-07-24 15:27:05 as read along with 6 people and 1 group dquest operon dullhunk AbnerCYH biomcgary dlobo GEB
  • Primary microRNA transcript retention at sites of transcription leads to enhanced microRNA production.
    The Journal of cell biology, Vol. 182, No. 1. (14 July 2008), pp. 61-76.
    by JM Pawlicki, JA Steitz
    posted to transcription primary microrna by maralena on 2008-07-17 10:27:00 as **
  • Mouse let-7 miRNA populations exhibit RNA editing that is constrained in the 5'-seed/cleavage/anchor regions and stabilize predicted mmu-let-7a:mRNA duplexes
    Genome Res. (9 July 2008), gr.078246.108.
    by Jeffrey G Reid, Francis C Lynn, Ankur K Nagaraja, Rafal B Drabek, Donna M Muzny, Chad A Shaw, Michelle K Weiss, Arash O Naghavi, Mahjabeen F Khan, Huifeng Zhu, Gemunu H Gunaratne, David B Corry, Jonathan N Miller, Michael S German, Richard A Gibbs, Martin M Matzuk, Preethi H Gunaratne
    posted to mouse microrna let-7 by maralena on 2008-07-14 08:04:52 as ** along with 2 people gdb bootsy
  • MicroRNA regulation and the variability of human cortical gene expression.
    Nucleic acids research (10 July 2008)
    by Rui Zhang, Bing Su
    posted to regulation microrna human gene expression by maralena on 2008-07-14 08:04:29 as ** along with 2 people daforerog bootsy
  • Proliferating Cells Express mRNAs with Shortened 3' Untranslated Regions and Fewer MicroRNA Target Sites
    Science, Vol. 320, No. 5883. (20 June 2008), pp. 1643-1647.
    by Rickard Sandberg, Joel R Neilson, Arup Sarma, Phillip A Sharp, Christopher B Burge
    posted to regulation ncrna in_vivo expression biology by faion on 2008-07-12 23:01:10 as ***** along with 6 people daforerog dchughes emptyhb bootsy lisa1 djkt
  • MicroRNA expression during chick embryo development
    Developmental Dynamics, Vol. 9999, No. 9999. (2006), NA.
    by Diana K Darnell, Simran Kaur, Stacey Stanislaw, Jay K Konieczka, Tatiana A Yatskievych, Parker B Antin
    posted to microrna_expression microrna by heliopais on 2008-06-30 13:11:11 as ** along with 1 person and 2 groups tardigrade microRNA Bioinformatics
  • The Conserved microRNA MiR-8 Tunes Atrophin Levels to Prevent Neurodegeneration in Drosophila
    Cell, Vol. 131, No. 1. (5 October 2007), pp. 136-145.
    by Janina S Karres, Valérie Hilgers, Ines Carrera, Jessica Treisman, Stephen M Cohen
    posted to microrna by heliopais on 2008-06-30 12:47:18 as ** along with 1 group microRNA
  • MicroRNA prediction with a novel ranking algorithm based on random walks
    Bioinformatics, Vol. 24, No. 13. (1 July 2008), pp. i50-58.
    by Yunpen Xu, Xuefeng Zhou, Weixiong Zhang
    posted to microrna_gene_finding microrna by heliopais on 2008-06-30 10:35:25 as *** along with 1 group microRNA
  • The mechanism of micro-RNA-mediated translation repression is determined by the promoter of the target gene
    Proceedings of the National Academy of Sciences (25 June 2008), 0800650105.
    by Yi W Kong, Ian G Cannell, Cornelia H de Moor, Kirsti Hill, Paul G Garside, Tiffany L Hamilton, Hedda A Meijer, Helen C Dobbyn, Mark Stoneley, Keith A Spriggs, Anne E Willis, Martin Bushell
    posted to repression promoter microrna mechanism by maralena on 2008-06-28 13:40:02 as ** along with 2 people fpattyn bootsy
  • Identification of novel chicken microRNAs and analysis of their genomic organization
    Gene, Vol. 418, No. 1-2. (15 July 2008), pp. 34-40.
    by Peng Shao, Hui Zhou, Zhen-Dong Xiao, Jie-Hua He, Mian-Bo Huang, Yue-Qin Chen, Liang-Hu Qu
    posted to microrna_gene_finding microrna by heliopais on 2008-06-27 15:35:54 as read along with 1 group microRNA
  • An activity-regulated microRNA controls dendritic plasticity by down-regulating p250GAP.
    Proceedings of the National Academy of Sciences of the United States of America (24 June 2008)
    by Gary A A Wayman, Monika Davare, Hideaki Ando, Dale Fortin, Olga Varlamova, Hai-Ying M Y Cheng, Daniel Marks, Karl Obrietan, Thomas R R Soderling, Richard H H Goodman, Soren Impey
    posted to p250gap mir-132 microrna by maralena on 2008-06-27 08:27:44 as **
  • Highly sensitive and specific microRNA expression profiling using BeadArray technology
    Nucl. Acids Res. (25 June 2008), gkn387.
    by Jing Chen, Jean Lozach, Eliza W Garcia, Bret Barnes, Shujun Luo, Ivan Mikoulitch, Lixin Zhou, Gary Schroth, Jian-Bing Fan
    posted to microrna_expression microrna by heliopais on 2008-06-26 09:39:18 as * along with 1 group microRNA
  • Functional screening identifies miR-315 as a potent activator of Wingless signaling
    Proceedings of the National Academy of Sciences, Vol. 104, No. 46. (13 November 2007), pp. 18151-18156.
    by Serena J Silver, Joshua W Hagen, Katsutomo Okamura, Norbert Perrimon, Eric C Lai
    posted to microrna by heliopais on 2008-06-24 15:08:06 as ** along with 1 person and 1 group zibdum microRNA
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