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mikaelhuss's library [121 articles]

最近录入 mikaelhuss's 文献库.
  • RNA polymerase is poised for activation across the genome
    Nature Genetics, Vol. 39, No. 12. (11 November 2007), pp. 1507-1511.
    by Ginger W Muse, Daniel A Gilchrist, Sergei Nechaev, Ruchir Shah, Joel S Parker, Sherry F Grissom, Julia Zeitlinger, Karen Adelman
    posted to rpolii drosophila by mikaelhuss on 2008-07-02 03:28:06 as ** along with 4 people and 1 group caseybrown skoch3 margaritis rschulz Koch_Lab
  • RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo
    Nature Genetics, Vol. 39, No. 12. (11 November 2007), pp. 1512-1516.
    by Julia Zeitlinger, Alexander Stark, Manolis Kellis, Joung-Woo Hong, Sergei Nechaev, Karen Adelman, Michael Levine, Richard A Young
    posted to rpolii drosophila by mikaelhuss on 2008-07-02 03:27:33 as ** along with 4 people caseybrown margaritis Stew rschulz
  • Dynamic Regulation of Nucleosome Positioning in the Human Genome
    Cell, Vol. 132, No. 5. (7 March 2008), pp. 887-898.
    by Dustin E Schones, Kairong Cui, Suresh Cuddapah, Tae-Young Roh, Artem Barski, Zhibin Wang, Gang Wei, Keji Zhao
    posted to rpolii nucleosome nextgenseq by mikaelhuss on 2008-07-02 03:23:42 as ** along with 7 people vega sameetmehta aalibes dchughes sleepingcell idonaldson oelemento
  • A tensor higher-order singular value decomposition for integrative analysis of DNA microarray data from different studies
    Proceedings of the National Academy of Sciences, Vol. 104, No. 47. (20 November 2007), pp. 18371-18376.
    by Larsson Omberg, Gene H Golub, Orly Alter
    posted to data-integration microarray svd by mikaelhuss on 2008-03-08 08:33:47 as ** along with 2 people and 1 group tmmurali wsjames Oxford Virology
  • Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome.
    Genome Biol, Vol. 6, No. 5. (2005)
    by AK Ramani, RC Bunescu, RJ Mooney, EM Marcotte
    posted to human ppi by mikaelhuss on 2008-03-04 05:41:29 as ** along with 16 people and 3 groups setar tmmurali dragonrez okarsligil lfriedl ccots balajis maryee brant opheliav davidandrzej wnpx rlhsiao bundschu raiyar grahamc kdl Bioinformatics generif_paper
  • Network-based classification of breast cancer metastasis
    Mol Syst Biol, Vol. 3 (16 October 2007)
    by Han-Yu Chuang, Eunjung Lee, Yu-Tsueng Liu, Doheon Lee, Trey Ideker
    posted to data-integration ideker network-inference ppi by mikaelhuss on 2008-03-04 05:27:31 as ** along with 12 people and 2 groups jfr kengg frohike cjeans zwang cerami abhattac shikin oelemento roys ptrobajo dap5087 Bioinformatics GeneGo
  • ChIP-Seq Data Reveal Nucleosome Architecture of Human Promoters
    Cell, Vol. 131, No. 5. (30 November 2007), pp. 831-832.
    by Christoph D Schmid, Philipp Bucher
    posted to chip solexa by mikaelhuss on 2008-02-06 17:27:07 as ***** along with 1 person vega
  • Deconstructing stem cell self-renewal: genetic insights into cell-cycle regulation
    Nat Rev Genet, Vol. 9, No. 2. (February 2008), pp. 115-128.
    by Keith W Orford, David T Scadden
    posted to cell_cycle stem_cells by mikaelhuss on 2008-01-19 16:33:08 as ** along with 1 person sebastien_vigneau
  • Functional tests of enhancer conservation between distantly related species.
    Development, Vol. 130, No. 21. (November 2003), pp. 5133-5142.
    by I Ruvinsky, G Ruvkun
    posted to enhancers by mikaelhuss on 2008-01-17 06:18:24 as ** along with 2 people and 1 group maximilianh cisevol cis-regulatory-evolution
  • Parallel patterns of evolution in the genomes and transcriptomes of humans and chimpanzees.
    Science, Vol. 309, No. 5742. (16 September 2005), pp. 1850-1854.
    by P Khaitovich, I Hellmann, W Enard, K Nowick, M Leinweber, H Franz, G Weiss, M Lachmann, S Pääbo
    posted to evolution transcription by mikaelhuss on 2008-01-17 06:17:34 as ** along with 7 people and 2 groups balicea madhadron nickluscombe hdopazo djkt JeffR100 usagi-kirin EBI-regulation BioinfoCIPF
  • Divergence of Transcription Factor Binding Sites Across Related Yeast Species
    Science, Vol. 317, No. 5839. (10 August 2007), pp. 815-819.
    by Anthony R Borneman, Tara A Gianoulis, Zhengdong D Zhang, Haiyuan Yu, Joel Rozowsky, Michael R Seringhaus, Lu Y Wang, Mark Gerstein, Michael Snyder
    posted to transcription yeast by mikaelhuss on 2008-01-17 06:16:31 as ** along with 16 people and 2 groups anka nklee aalibes chad_davis dpollard djkt lusk cjeans sujaikumar zwang GustavoLacerda Jporci maximilianh cisevol njcitulike emptyhb EisenLab cis-regulatory-evolution
  • Expression profiling in primates reveals a rapid evolution of human transcription factors
    Nature, Vol. 440, No. 7081. (March 2006), pp. 242-245.
    by Yoav Gilad, Alicia Oshlack, Gordon K Smyth, Terence P Speed, Kevin P White
    posted to transcription by mikaelhuss on 2008-01-17 06:15:47 as ** along with 15 people and 4 groups stevanspringer ccots eckart_bindewald dchughes tabu nirfriedman nickluscombe ranb johncumbers djkt nicg JeffR100 candypmcg emarker emptyhb FAB-lab G4ID EBI-regulation Genetics-of-Gambling
  • The role of chromatin during transcription.
    Cell, Vol. 128, No. 4. (23 February 2007), pp. 707-719.
    by B Li, M Carey, JL Workman
    posted to chromatin histone-modifications by mikaelhuss on 2008-01-17 06:15:20 as ** along with 5 people brant jyuh dchughes olympos RookieNo1
  • Protein-protein interaction networks and biology—what's the connection?
    Nature Biotechnology, Vol. 26, No. 1., pp. 69-72.
    by Luke Hakes, John W Pinney, David L Robertson, Simon C Lovell
    posted to network ppi by mikaelhuss on 2008-01-09 08:56:06 as ** along with 14 people and 1 group paolomarcatili Yanno jyuh tmmurali jfr balicea dullhunk neils cjeans nedwards biehl shikin mclarenv Yumyai GeneGo
  • Generation of induced pluripotent stem cells without Myc from mouse and human fibroblasts.
    Nat Biotechnol (30 November 2007)
    by Masato Nakagawa, Michiyo Koyanagi, Koji Tanabe, Kazutoshi Takahashi, Tomoko Ichisaka, Takashi Aoi, Keisuke Okita, Yuji Mochiduki, Nanako Takizawa, Shinya Yamanaka
    posted to stem_cells by mikaelhuss on 2008-01-09 06:50:30 as ** along with 4 people and 1 group jyuh balicea wsjames shayashi Oxford Virology
  • Is evolvability evolvable?
    Nat Rev Genet (4 December 2007)
    by Massimo Pigliucci
    posted to evolution evolvability modularity robustness by mikaelhuss on 2008-01-03 06:56:31 as ** along with 7 people rebeccamancy zwang bootsy nosada17 qwermish mingzhi renatomilani
  • Evolution of complex modular biological networks
    (18 Dec 2007)
    by Arend Hintze, Christoph Adami
    posted to evolution metabolism modularity robustness by mikaelhuss on 2008-01-03 02:47:57 as **** along with 2 people Koh maralena
  • Constructing an enzyme-centric view of metabolism -- Horne et al. 20 (13): 2050 -- Bioinformatics
    posted to enzyme_centric_graph by mikaelhuss on 2007-12-28 09:55:04 as **
  • Comparison of Modularization Methods in Application to Different Biological Networks
    Data Mining and Bioinformatics (2006), pp. 185-195.
    by Zhuo Wang, Xin-Guang Zhu, Yazhu Chen, Yixue Li, Lei Liu
    posted to enzyme_centric_graph by mikaelhuss on 2007-12-28 09:54:35 as **
  • Exploring photosynthesis evolution by comparative analysis of metabolic networks between chloroplasts and photosynthetic bacteria
    posted to enzyme_centric_graph by mikaelhuss on 2007-12-28 09:54:14 as **
  • A flexible view of metabolic network
    BMC Systems Biology, Vol. 1, No. Suppl 1. (2007)
    by Ko Y Lo, Andrew Dalby
    posted to enzyme_centric_graph by mikaelhuss on 2007-12-28 09:52:57 as **
  • A map of human cancer signaling
    posted to data-integration network by mikaelhuss on 2007-12-19 09:57:37 as **
  • Modeling the regulatory network of histone acetylation in Saccharomyces cerevisiae
    posted to acetylation histone-modifications network by mikaelhuss on 2007-12-19 09:54:31 as **
  • Identification of tissue-specific cis-regulatory modules based on interactions between transcription factors
    BMC Bioinformatics, Vol. 8 (09 November 2007), 437.
    by Xueping Yu, Jimmy Lin, Donald J Zack, Jiang Qian
    posted to regulation tissue_specificity transcription by mikaelhuss on 2007-12-14 06:12:36 as ** along with 7 people bootsy jyuh chad_davis nklee maximilianh idonaldson njcitulike
  • Automated data integration for developmental biological research -- Zhong and Sternberg 134 (18): 3227 -- Development
    posted to chip data-integration by mikaelhuss on 2007-12-11 05:11:29 as **
  • A mathematical tool for exploring the dynamics of biological networks -- Barbano et al. 104 (49): 19169 -- Proceedings of the National Academy of Sciences
    posted to dimensionality_reduction statistics by mikaelhuss on 2007-12-05 03:43:38 as **
  • PLoS ONE: Indexing Strategies for Rapid Searches of Short Words in Genome Sequences
    posted to dna indexing search by mikaelhuss on 2007-12-04 04:07:11 as ** along with 1 person lp2
  • PLoS ONE: Proteomic Shifts in Embryonic Stem Cells with Gene Dose Modifications Suggest the Presence of Balancer Proteins in Protein Regulatory Networks
    posted to balancer protein stem_cells by mikaelhuss on 2007-12-04 03:54:05 as **
  • Inference of combinatorial regulation in yeast transcriptional networks: A case study of sporulation -- Wang et al. 102 (6): 1998 -- Proceedings of the National Academy of Sciences
    posted to regulation transcription by mikaelhuss on 2007-11-08 05:00:13 as **
  • Executable cell biology : Article : Nature Biotechnology
    posted to modeling sysbio by mikaelhuss on 2007-11-08 04:23:12 as **
  • The Importance of Bottlenecks in Protein Networks: Correlation with Gene Essentiality and Expression Dynamics
    posted to betweenness_centrality hubs ppi by mikaelhuss on 2007-09-27 03:50:25 as read
  • The Oct4 and Nanog transcription network regulates pluripotency in mouse embryonic stem cells
    Nature Genetics, Vol. 38, No. 4. (05 March 2006), pp. 431-440.
    by Yuin-Han Loh, Qiang Wu, Joon-Lin Chew, Vinsensius B Vega, Weiwei Zhang, Xi Chen, Guillaume Bourque, Joshy George, Bernard Leong, Jun Liu, Kee-Yew Wong, Ken W Sung, Charlie WH Lee, Xiao-Dong Zhao, Kuo-Ping Chiu, Leonard Lipovich, Vladimir A Kuznetsov, Paul Robson, Lawrence W Stanton, Chia-Lin Wei, Yijun Ruan, Bing Lim, Huck-Hui Ng
    posted to stem_cells transcription by mikaelhuss on 2007-09-26 07:16:42 as **** along with 9 people MllePapillon jyuh cmmorel gpalidwor brixtonmc vega eukfn idonaldson tdmckee
  • Prediction of genomic functional elements
    posted to bioinformatics prediction by mikaelhuss on 2007-09-26 07:10:02 as **
  • Transcriptional regulatory elements in the human genome
    posted to review transcription by mikaelhuss on 2007-09-26 07:09:51 as *****
  • Core transcriptional regulatory circuitry in human embryonic stem cells.
    Cell, Vol. 122, No. 6. (23 September 2005), pp. 947-956.
    by LA Boyer, TI Lee, MF Cole, SE Johnstone, SS Levine, JP Zucker, MG Guenther, RM Kumar, HL Murray, RG Jenner, DK Gifford, DA Melton, R Jaenisch, RA Young
    posted to chip stem_cells transcription by mikaelhuss on 2007-09-26 02:36:49 as **** along with 12 people dquest provero brant rklancer kentsis tardigrade balicea tabu cconboy koller faisalm tdmckee
  • Genome-Wide Analysis of Protein-DNA Interactions - Annual Review of Genomics and Human Genetics, 7(1):81 - Abstract
    posted to chip review by mikaelhuss on 2007-09-26 02:34:43 as ***
  • Transcriptional Dynamics of the Embryonic Stem Cell Switch
    PLoS Computational Biology, Vol. 2, No. 9. (1 September 2006), e123.
    by Vijay Chickarmane, Carl Troein, Ulrike A Nuber, Herbert M Sauro, Carsten Peterson
    posted to stem_cells sysbio transcription by mikaelhuss on 2007-09-26 02:33:49 as *** along with 1 person tdmckee
  • A protein interaction network for pluripotency of embryonic stem cells : Article : Nature
    posted to ppi stem_cells by mikaelhuss on 2007-09-26 02:33:25 as ***
  • Excitability Constraints on Voltage-Gated Sodium Channels
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e177.
    by Elaine Angelino, Michael P Brenner
    posted to neuromodelling sodium by mikaelhuss on 2007-09-21 05:18:14 as **
  • Unveiling community structures in weighted networks
    posted to modularity network by mikaelhuss on 2007-09-20 07:04:57 as ***
  • Module identification in bipartite and directed networks
    posted to modularity network by mikaelhuss on 2007-09-20 07:04:14 as ****
  • Grammatical representations of macromolecular structure.
    J Comput Biol, Vol. 13, No. 5. (June 2006), pp. 1077-1100.
    by D Chiang, AK Joshi, DB Searls
    posted to biolinguistics macromolecules by mikaelhuss on 2007-09-10 15:09:00 as ***
  • Protein linguistics â a grammar for modular protein assembly?
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 1., pp. 68-73.
    by Mario Gimona
    posted to biolinguistics modularity protein by mikaelhuss on 2007-09-10 15:08:40 as ***
  • Universally Sloppy Parameter Sensitivities in Systems Biology Models
    PLoS Computational Biology, Vol. preprint, No. 2007. (1 August 2007), e189.eor.
    by Ryan N Gutenkunst, Joshua Waterfall, Fergal Casey, Kevin Brown, Christopher R Myers, James P Sethna
    posted to sensitivity sysbio by mikaelhuss on 2007-08-16 12:40:23 as **** along with 1 person ryanraaum
  • Automated Querying of Genome Databases
    PLoS Computational Biology, Vol. 3, No. 1. (1 January 2007), e1.
    by Peter Schattner
    posted to bioinformatics gene by mikaelhuss on 2007-07-21 18:05:33 as **** along with 3 people skhadar olympos kmdaily
  • Deciphering principles of transcription regulation in eukaryotic genomes
    Mol Syst Biol, Vol. 2, No. 1. (11 April 2006), pp. msb4100054-E1-msb4100054-E10.
    by Dat H Nguyen, Patrik D'Haeseleer
    posted to sysbio transcription by mikaelhuss on 2007-06-28 16:13:27 as **** along with 5 people and 2 groups isimpson okarsligil pau koller reidy Bioinformatics RNAtransport
  • MIT Press Journals - Neural Computation - 19(4):974 - Abstract
    posted to cpg by mikaelhuss on 2007-04-26 16:02:19 as **
  • Qualitative analysis for recurrent neural networks with linear threshold transfer functions
    Circuits and Systems I: Regular Papers, IEEE Transactions on [Circuits and Systems I: Fundamental Theory and Applications, IEEE Transactions on], Vol. 52, No. 5. (2005), pp. 1003-1012.
    by KC Tan, Huajin Tang, Weinian Zhang
    posted to multistability by mikaelhuss on 2007-04-20 16:17:06 as **
  • Multistability analysis of phase locking patterns in an excitatory coupled neural system
    Physical Review E, Vol. 60, No. 2. (1999), 2177.
    by Seon H Park, Seunghwan Kim, Hyeon-Bong Pyo, Sooyeul Lee
    posted to multistability by mikaelhuss on 2007-04-20 16:16:53 as **
  • Multistability of cognitive maps in the hippocampus of old rats.
    Nature, Vol. 388, No. 6639. (17 July 1997), pp. 272-275.
    by CA Barnes, MS Suster, J Shen, BL McNaughton
    posted to multistability by mikaelhuss on 2007-04-20 16:16:39 as **
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