mcphee's library [132 articles]

Finding needles in haystacks is harder with neutrality

Genetic Programming and Evolvable Machines, Vol. 7, No. 2. (June 2006), pp. 131-144.

by M Collins

posted to boolean cartesian-gp evolution evolutionary-computation genetic-programming neutrality by mcphee on 2007-09-11 10:21:54 as along with 1 person mjoach

Refactoring Workbook

(2003)

by William C Wake

posted to agile-development object-oriented refactoring software-design by mcphee on 2005-10-17 15:43:17 as along with 2 people hayashi emerson

Blindbuilder: A New Encoding to Evolve Lego-Like Structures

Genetic Programming (2006), pp. 61-72.

by Alexandre Devert, Nicolas Bredeche, Marc Schoenauer

posted to construction design development evolution evolutionary-computation lego by mcphee on 2008-02-25 16:05:06 as along with 1 person and 1 group dlobo GEB

The four Rs of RNA-directed evolution

Nat Genet, Vol. 36, No. 1. (January 2004), pp. 19-25.

by Alan Herbert

posted to biology evolution genetics reverse-transcription transposable-elements transposons by mcphee on 2008-01-01 18:39:22 as

The Geographic Mosaic of Coevolution (Interspecific Interactions)

(15 June 2005)

by John N Thompson

posted to coevolution evolution evolutionary-computation geography locality by mcphee on 2007-11-02 13:17:15 as along with 1 person and 1 group cmm FAB-lab

Evolution of a Polyphenism by Genetic Accommodation

Science, Vol. 311, No. 5761. (3 February 2006), pp. 650-652.

by Yuichiro Suzuki, Frederik H Nijhout

posted to biology evolution genetics plasticity by mcphee on 2007-09-20 09:36:01 as along with 1 person and 1 group stevanspringer FAB-lab

Genetic Transposition in Tree-Adjoining Grammar Guided Genetic Programming: The Duplication Operator

Genetic Programming (2005), pp. 108-119.

by Nguyen X Hoai, Robert I Mckay, Daryl Essam, Hoang T Hao

posted to evolution evolutionary-computation genetic-programming genetics grammar transposable-elements transposons by mcphee on 2007-09-17 15:38:28 as along with 1 person lop

GP and Bloat: Absorbing boundaries and spatial structures

(2006), pp. 1-12.

by Peter A Whigham, G Dick

edited by The L Pham, Hai K Le, Xuan H Nguyen

posted to bloat cellular evolution evolutionary-computation genetic-algorithms genetic-programming geography gp locality spatially-structured by mcphee on 2007-09-17 12:18:49 as

Designing an Evolutionary Strategizing Machine for Game Playing and Beyond

Systems, Man and Cybernetics, Part C: Applications and Reviews, IEEE Transactions on, Vol. 37, No. 4. (2007), pp. 583-593.

by M Sipper, Y Azaria, A Hauptman, Y Shichel

posted to evolution evolutionary-computation game human-competitive strategy by mcphee on 2007-09-13 14:55:17 as

Evolutionary morphogenesis for multi-cellular systems

Genetic Programming and Evolvable Machines, Vol. 8, No. 1. (March 2007), pp. 61-96.

by Roggen, Daniel, Federici, Diego, Floreano, Dario

posted to development evolution evolutionary-computation heirarchical structures by mcphee on 2007-09-11 10:28:29 as along with 1 person and 1 group dlobo GEB

Integrating generative growth and evolutionary computation for form exploration

Genetic Programming and Evolvable Machines, Vol. 8, No. 2. (June 2007), pp. 163-186.

by Oreilly, Una-May, Hemberg, Martin

posted to development evolution evolutionary-computation plasticity by mcphee on 2007-09-11 10:26:10 as

Motility, mixing, and multicellularity

Genetic Programming and Evolvable Machines, Vol. 8, No. 2. (June 2007), pp. 115-129.

by Solari, Cristian, Kessler, John, Goldstein, Raymond

posted to development evolution evolutionary-computation geography heirarchical locality structures by mcphee on 2007-09-11 10:25:15 as

How many Good Programs are there? How Long are they?

by WB Langdon

posted to bloat evolutionary-computation genetic-programming langdon by mcphee on 2007-09-10 10:42:18 as along with 1 person scis0000001

Explicit Control of Diversity and Effective Variation Distance in Linear Genetic Programming

Vol. 2278 (March-May 2002), pp. 38-50.

by Markus Brameier, Wolfgang Banzhaf

edited by Evelyne Lutton, James A Foster, Julian Miller, Conor Ryan, Andrea GB Tettamanzi

posted to diversity genetic genetic-programming linear-gp programming variance variation by mcphee on 2006-05-25 20:35:54 as

An Analysis of Diversity in Genetic Programming

by Steven M Gustafson

posted to behaviors causality crossover diversity genetic genetic-programming programming sampling semantics structures subtree by mcphee on 2006-05-25 20:31:53 as

Is Increased Diversity in Genetic Programming Beneficial? An Analysis of Lineage Selection

by Edmund K Burke, Steven Gustafson, Graham Kendall, Natalio Krasnogor

posted to behaviors causality crossover diversity genetic genetic-programming programming sampling semantics structures subtree by mcphee on 2006-05-25 20:25:05 as

Sampling of Unique Structures and Behaviours in Genetic Programming

Vol. 3003 (April 2004), pp. 279-288.

by S Gustafson, EK Burke, G Kendall

edited by M Keijzer, Others

posted to behaviors causality crossover genetic genetic-programming programming sampling semantics structures subtree by mcphee on 2006-05-25 20:19:15 as

Automatic Meaning Discovery Using Google

(21 December 2004)

by Rudi Cilibrasi, Paul MB Vitanyi

posted to artificial-intelligence google knowledge language linguistics meaning web by mcphee on 2006-01-03 20:24:00 as along with 24 people and 6 groups kolenchery mercutio sourada samth korakot parmentierf mafwood A_Olympia mortimer ranford RobotAdam macartisan ingo stavros ctl umbra joelh sugarexpletive simons ngdelamo AlisonBabeu scorreia_pro votis anton-tayanovskyy NU-PRL Philosophy_of_Information UoY-CS-AIG Blog_and_Wiki_Research AI NETS-UAM

Evolving Turing Complete Representations

(2003)

by John Woodward

posted to analysis evolutionary-computation genetic-programming gp by mcphee on 2005-11-11 19:32:58 as

Effective Fitness as an Alternative Paradigm for Evolutionary Computation II: Examples and Applications

Genetic Programming and Evolvable Machines, Vol. 2, No. 1. (March 2001), pp. 7-32.

by CR Stephens, Mora M Vargas

posted to evolutionary-computation hiff-schema-gecco-05 schema-theory by mcphee on 2005-04-15 07:45:37 as

Effective Fitness as an Alternative Paradigm for Evolutionary Computation I: General Formalism

Genetic Programming and Evolvable Machines, Vol. 1, No. 4. (October 2000), pp. 363-378.

by CR Stephens, Mora M Vargas

posted to evolutionary-computation hiff-schema-gecco-05 schema-theory by mcphee on 2005-04-15 07:44:45 as

Visualizing Tree Structures in Genetic Programming

Genetic Programming and Evolvable Machines, Vol. 6 (2005)

by David J Ward, Stephen L Long, Jason M Daida, Adam M Hilss

posted to bloat evolutionary-computation genetic-programming visualization by mcphee on 2005-03-14 22:37:56 as along with 722 people and 133 groups andrealira pchia Zephyrus songpku rwilliamson motchy rpbharti MariaChiaraP dconnelly maburkitt eisenmaj davidchavalarias 6rheology amydash dcastro boellernadja nafets sbaete steveut pathari alexispaz fghjorth tanneama000 ricckli iarmac laurabailey wolfe275 tkravitz pulsus-morbi Gaetan EsepBib jakobl ablam tbolt427 kungcc wartaalman austin Langster ezaydens Scis0000002 Axis jeanbean melody jsenn christiankissig psique scarcelan balicea danzinde gi0rgi0ne Stepstep abdulpur nlauzier mirweis christian_librarian skumagai nkishan squirmelia carterb Corbasson IanBrown malkav30 sarahmccrum gkvas freddan jago giolakat kndiaye gvandyk1 wongmld Neeperando duckysherwood yungyuc murb midshipman ranger vrich taenneken pdessus Repton nikko LTrottier mfloris hrwiltse scottkb ThomasKluge fernand0 dperkel egh jyuh samth sora florine ladygoat hopm hellige parmentierf ssn mortimer tinkha V plaugg ansobol mjaz berthelemy eldan pdlug zephoria carloscabanillas Janos bkliethermes nazareno elsantosneto januadiaboli yaroslavvb jurijmlotman geomblog srl bigga treycausey CSG chandrashekar denns matzke sherrivokey sona cassj lijil hlovise coolger incites bigmagpie alicetiara yorgos johannsen cavlec smbrower viller jenmy mlzafron tymmail sedging davidr macowell eimaj42jdp Flit BenWillems agallet hawesie sngourlay jolilius rmagf acer ville garyfeng danifazzio willwade gantlord melanieramage mgregg cwb neteler carneym crispinb rdlong lillekatt davemack agarza carsonr imcdnzl tjimenez Tolik lna dmikurube szityu michmill mamadoudiao kaniko applebyb joni2am P2324548 jpbenda Vaccine tadm mkwalker anar grzegorz japple planetoid okarsligil stormybriggs UWerplab nbr inbetweener pafmon stina pgastrein xiruela kutabar jfr xamde kliether mleis jshahin cmunson lfriedl sharonhoward ccots terraces czlamer brent_lance subhradeep jjray Jellyfish cmmorel bayesian 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langec tuaba os252 JonathanFeinberg jingliu dvoigt hywel tshr dgront isorhiza foistudy jenine donade kmcolo fisherp voiklis insilico fitzgeraldsteele junoda sumeetonweb familydoc craigtalbert dmitri83 dmboyer martint RalphPutnam atsu-kan hlwoodcock reta gogabr smmurphy rafabravo dabhishe JennaW hisashim cjones chuggins Sulpicus ranb alikocho hiromark gane5h l-alex rdiaz pilho ueberweise wangsd echinotrix ak Odi bezbozhnik todchambers perceptron wasteland93 yizheng stephane-jean mahlow mbaric mtr anon_pl dir289 lanubile fcalefato dpeeler QFRMC xwenlong johncumbers kgronemyer keitokita hkl pervane mpennell kedmond mfisk brusilovsky gregflanders hgamboa pgeymueller last5laps jbrown nathanielvirgo rwm101 ChristianGraf marohn davetown101 barbz79it naturecure edgarbc muellerkind fugitive joshuashen aviad_work crusher lucbelanger lauragonzalez Manhal gagliol ashandanj lns cblock trungdong lechristophe ealloza s-adachi rsabouni dhingra corcoted Shii vrv fmiyamae livingthingdan kaz229 Haggan knowlengr aniak krzywy tg Rootfruit ricklillie gracev lrsantos babyone eenauk long pereicoco lieselot yeqiwei amcmorl redelings nojhan mkharito rocarvaj stoev tdpessem briansludwig ttsutsumi wenniehu elsiatcase perhapstoopink atbrew fsteeg digitaldust CDivin whshen andersok fpalm brembs ragha mgran thomaswuebben justaubrey macfreek lilalia azygmunt ddineen miguelbezerra jdiggans sjgaller huminfly thjt shenshei erikwdavis jsvoboda ceegrs2 jared jijkoun slafont mdifranc GregorSuhr jmurdoch mattlee jvrantwijk ible fruminator mkowa fellow tzmtzm samjlord abbyworld aozkan giorgis fluomouse Tellima RiccardoAlbertoni annmarie37 ciriol sstoerge gengh goingsomewhere ruddyconsult MichaelGaebler nco71 Vezhnick fabianhemmert shangnan Fahland lossius adriancooke baikanamako elisaformist jsanpedro oceanflynn imaginaryunit bobturner grahamc nascardaughter shariffdinah ibschwartz srfairclough joepickrell bouchard islandrru hohkhkh1 alchemyst mlewcio irwink henriksdal cychang padraic trshepherd tarjeiha josemblazquez pitzelberger hukkinen toppi sjc garancher_gougeon_reyotero nmaisonneuve powell digamberjuwekar cmcleod grieth isys1186 aartaki polyparadigm rodney portalqm bangb cdm jeanfou CareyNadell teh zwang shivakmr prerona michaelmampaey mick39 dagmar bellia akom kevin7 friveroll khm zetetic karipuf leechuck hp2oo1 jenda_z ngrandy andreacapocci ghunter Maderlock shizhao dayadvham monientiedt rebeccamancy calamar c-gobert baniel jborn dmschneid tale chrisatcite mloewer hanxiansheng rlai jasonbobe ggorjan zeppe AlisonBabeu eprzekwa J_Raff fornstar yodha Akimasa technical oilpalm spacely j0nes TCgroup ingedwar Oktoplus stonest cwr jladell rbmoura Leize adjih carpi omidf2 msampson olaf markusd paulschlesinger qwermish librain pkrrules thehajime PeterRabbit paulvb cvq peefeeyatko kinestetika lynleypage truongducthang metaspencer dodger042 jpassoth krokicki tibbitts brianlimyl vogmae doylem hayko gjhuang ashko buggle bemike cvarnam umurthy21 andregermanoregert Katje tgyork 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WAND sims_phd_cohort_2005 ASR digital_youth Librarians biodiversity_conservation Global_biodiversity_model InformationRetrieval Wikipedia AssistiveTechnology Bioinformatics mathgamespatterns MACLab folksonomy Neuroscience VisionLab Personal-Information-Management CMS Stoc_Proc_Ecology_WG LanguageAndBrain BrainTheory dtl hdm id vds-arg ALF DPR EvolutionaryComputation STS infovis 2ndFloor fammed-publichealth AI eni Biofluid FAB-lab DSS NeuralNetworks mobilecomputing tmig_psycho RETA SITCRC CDG cliamte_change folk_epistemology instaar_graduate_students Projet_ENSIMAG climate_change BUiGEM social_navigation Macroelectronics ARC04 The_Truants QFRMC_ConsumerCredit Plant-Tissue-Simulation METRIK Metaheuristics Boydian_Society eLearning BioinfoCIPF Nutritional_Polymorphisms CaltechCMP SEGAL Optimization location SNE kickOffTUG-Robocup NanoMechanicsofMetals_MPIMF Georouting Child_Support Software-Architecture ParkinsonLab_at_MaRS moernerlab ilps livingthing HUCO-627-W07 elearning_research PLE-TEL-project Femtochemistry_LMU ediadem ENSSIBVeille memoir ILK ColDyn ImatiGESemantic AGH-IISG PRC_SEA TCD-NDS102-Project CAOS Adaptive-Web Microbial-Ecology Flexible_ICT-supported_learning Social_Software_ws_07-08 DialogueResearchGroup AM-VideoGames-Gender dIEMoSIRIS microbiology_nijmegen Europe_GPE ZnO_project ADMiRes Health_Sciences_Librarians Desgin-by-Contract MITCCI Kopelman_Group DarkMarkGroup VivesMinions PostureMobility compneur Philosophy of physics PsychStatsBanter Video based Animation for People

Spontaneous evolution of modularity and network motifs.

Proc Natl Acad Sci U S A (20 September 2005)

by Nadav Kashtan, Uri Alon

posted to evolution evolutionary-computation modularity networks by mcphee on 2008-03-23 21:24:05 as along with 15 people and 6 groups carlk marimo monod Borelli alexg i41m cmm Peterfine javierFellow rgb mattjb rebeccamancy cwr phreeza stefanoallesina MathBio FAB-lab ComplexAdaptiveSystems pileWorks DSTO-CAS ColDyn

Representation and structural difficulty in genetic programming

Evolutionary Computation, IEEE Transactions on, Vol. 10, No. 2. (2006), pp. 157-166.

by Nguyen X Hoai, RI Mckay, D Essam

posted to evolution evolutionary-computation genetic-programming grammar modularity representation structures tag by mcphee on 2008-02-14 14:24:31 as along with 1 person lop

Building on Success in Genetic Programming: Adaptive Variation and Developmental Evaluation

Advances in Computation and Intelligence (2007), pp. 137-146.

by Tuan-Hao Hoang, Daryl Essam, Bob Mckay, Nguyen-Xuan Hoai

posted to development evolutionary-computation genetic-programming grammar tag by mcphee on 2008-02-14 11:52:36 as

Tree Adjoining Grammars, Language Bias, and Genetic Programming

Genetic Programming (2003), pp. 157-183.

by Nguyen Hoai, RI Mckay, HA Abbass

posted to evolution evolutionary-computation genetic-programming grammar tag by mcphee on 2008-02-14 11:50:07 as along with 1 person lop

Co-evolutionary modular neural networks for automatic problem decomposition

Evolutionary Computation, 2005. The 2005 IEEE Congress on, Vol. 3 (2005), pp. 2691-2698 Vol. 3.

by VR Khare, Xin Yao, B Sendhoff, Yaochu Jin, H Wersing

posted to co-evolution evolution evolutionary-computation modularity neural-networks problem-decomposition by mcphee on 2008-02-04 14:38:03 as

Environments Conducive to Evolution of Modularity

Parallel Problem Solving from Nature - PPSN IX (2006), pp. 603-612.

by Vineet Khare, Bernhard Sendhoff, Xin Yao

posted to dynamic-fitness evolution evolutionary-computation modularity by mcphee on 2008-02-04 14:35:46 as

The Push3 execution stack and the evolution of control

(2005), pp. 1689-1696.

by Lee Spector, Jon Klein, Maarten Keijzer

posted to evolutionary-computation genetic-programming models pushgp stack-based by mcphee on 2008-01-24 15:06:06 as

How to Choose Appropriate Function Sets for Gentic Programming

Genetic Programming (2004), pp. 198-207.

by Gang Wang, Terence Soule

posted to evolutionary-computation function-sets genetic-programming by mcphee on 2008-01-23 12:51:27 as

Generating Hard Satisfiable Formulas by Hiding Solutions Deceptively

JAIR

by Haixia Jia, Cristopher Moore, Doug Strain

posted to 3-sat instances logic problem satisfiability test-problems by mcphee on 2007-10-26 10:34:38 as

Functional genetic programming with combinators

(2006), pp. 110-127.

by Forrest Briggs, Melissa O'Neill

edited by The L Pham, Hai K Le, Xuan H Nguyen

posted to evolutionary-computation functional-programming genetic-programming typed type-system by mcphee on 2007-09-28 14:14:42 as

Covariant Genetic Dynamics

Evolutionary Computation, Vol. 15, No. 3. (2007), pp. 291-320.

by Chryssomalis Chryssomalakos, Christopher R Stephens

posted to dynamical-systems dynamics evolution evolutionary-computation genetics theory by mcphee on 2007-09-26 11:41:19 as

Landscapes and Effective Fitness

Comments on Theoretical Biology, Vol. 8, No. 4. (2003), pp. 389-431.

by Peter F Stadler, Christopher R Stephens

posted to effective-fitness evolution evolutionary-computation fitness landscape theory by mcphee on 2007-09-26 11:29:10 as along with 1 person kgage

Codon Bias and Mutability in HIV Sequences

Journal of Molecular Evolution, Vol. 48, No. 4. (5 April 1999), pp. 390-397.

by CR Stephens, H Waelbroeck

posted to bias biology codon evolution genetics sequences by mcphee on 2007-09-26 11:26:02 as

Renormalization group theory in the new millennium. IV

Physics Reports, Vol. 363, No. 4-6. (June 2002), pp. 219-222.

by Denjoe O'Connor, CR Stephens

posted to mathematics physics renormalization theory by mcphee on 2007-09-26 11:12:26 as

Renormalization group theory of crossovers

Physics Reports, Vol. 363, No. 4-6. (June 2002), pp. 425-545.

by Denjoe O'Connor, CR Stephens

posted to crossover evolution evolutionary-computation recombination renormalization theory by mcphee on 2007-09-26 11:04:46 as

Constraints on the evolution of adaptive phenotypic plasticity in plants

New Phytologist, Vol. 166, No. 1. (April 2005), pp. 49-60.

by Mark v van Kleunen, Markus Fischer

posted to biology evolution phenotyes plant plasticity by mcphee on 2007-09-26 10:51:50 as along with 1 person fischerb

Demonstrating the Evolution of Complex Genetic Representations: An Evolution of Artificial Plants

(2003)

by Marc Toussaint

posted to evolution evolutionary-computation plasticity representation by mcphee on 2007-09-26 10:50:48 as along with 1 person kekib

Genetics and evolution of phenotypic plasticity

ANN. REV. ECOL. SYST., Vol. 24 (1993), pp. 35-68.

by SM Scheiner

posted to biology evolution genetics plasticity by mcphee on 2007-09-26 10:50:02 as along with 1 person fischerb

Evolution of phenotypic plasticity: patterns of plasticity and the emergence of ecotypes

New Phytologist, Vol. 166, No. 1. (April 2005), pp. 101-118.

by Gerdien d de Jong

posted to evolution genetics plasticity variance variation by mcphee on 2007-09-20 10:05:56 as along with 1 person imouthesmp

Myths and legends of the Baldwin effect

(1996), pp. 135-142.

by Peter Turney

posted to baldwin-effect evolution evolutionary-computation learning by mcphee on 2007-09-13 14:49:33 as

Causality in Genetic Programming

(JanuaryMay-JanuarySeptember 1995), pp. 256-263.

by Justinian Rosca, Dana H Ballard

edited by L Eshelman

posted to causality crossover genetic programming semantics subtree by mcphee on 2006-05-25 20:15:21 as

Maintaining Diversity in Genetic Search

(1984), pp. 247-250.

by Michael L Mauldin

posted to diversity evolutionary-computation genetic-algorithms genetic-programming by mcphee on 2006-02-01 01:33:54 as

Analysis of single-node (building) blocks in genetic programming

(1999), pp. 217-241.

by Jason M Daida, Robert R Bertram, John A Polito, Stephen A Stanhope

posted to analysis building-blocks evolutionary-computation genetic-programming ummgpbb06 by mcphee on 2006-01-20 21:40:23 as

Cellular Genetic Algorithms

(1993)

by Darrell L Whitley

posted to cellular ecological-modelling evolutionary-computation g topography trivial-geography by mcphee on 2006-01-15 00:19:49 as

Automatic discovery of cross-family sequence features associated with protein function

BMC Bioinformatics, Vol. 7, No. 16. (2006)

by Markus Brameier, Josien Haan, Andrea Krings, Robert M Maccallum

posted to bioinformatics data-mining evolutionary-computation function genetic-programming protein ummbioinformatics by mcphee on 2006-01-13 17:52:11 as

How to Choose Appropriate Function Sets for Gentic Programming

by Gang Wang, Terence Soule

edited by Maarten Keijzer, Una-May O'Reilly, Simon M Lucas, Ernesto Costa, Terence Soule

posted to configuration evolutionary-computation genetic-programming by mcphee on 2005-11-21 02:20:03 as

Let's Get Ready to Rumble: Crossover Versus Mutation Head to Head

(18 May 2004)

by Kumara Sastry, David E Goldberg

posted to building-blocks evolutionary-computation genetic-algorithms by mcphee on 2005-05-03 18:14:21 as

The electric sheep

SIGEVOlution, Vol. 1, No. 2. (June 2006), pp. 10-16.

by Scott Draves

posted to art evolution evolutionary-computation by mcphee on 2008-02-28 09:21:38 as