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maryee's library [78 articles]

最近录入 maryee's 文献库.
  • Yeast two-hybrid contributions to interactome mapping
    Current Opinion in Biotechnology, Vol. 17, No. 4. (August 2006), pp. 387-393.
    by Jodi R Parrish, Keith D Gulyas, Jr Finley
    posted to accelerating_mapping interactome by maryee on 2007-01-04 17:14:50 as ***** along with 6 people and 2 groups dchughes eukfn nm grahamc cmor bethbromley G4ID Genetics-of-Gambling
  • Assessing reliability of gene clusters from gene expression data.
    Funct Integr Genomics, Vol. 1, No. 3. (November 2000), pp. 156-173.
    by K Zhang, H Zhao
    posted to microarray treetest by maryee on 2006-12-05 22:53:27 as ****
  • The elusive yeast interactome.
    Genome Biol, Vol. 7, No. 6. (2006)
    by J Goll, P Uetz
    posted to accelerating_mapping interactome by maryee on 2006-11-21 19:51:26 as ** along with 3 people chad_davis eukfn Evangelia
  • A Crossed Random Effects Model for Unbalanced Data with Applications in Cross-Sectional and Longitudinal Research
    Journal of Educational Statistics, Vol. 18, No. 4. (1993), pp. 321-349.
    by Stephen W Raudenbush
    posted to mixedeffectsmodel by maryee on 2006-10-25 00:11:34 as **
  • Learning to predict protein-protein interactions from protein sequences.
    Bioinformatics, Vol. 19, No. 15. (12 October 2003), pp. 1875-1881.
    by SM Gomez, WS Noble, A Rzhetsky
    posted to interactome by maryee on 2006-10-18 15:21:14 as ** along with 4 people grahamc cjeans wilbur Pao-Yang
  • Correlated sequence-signatures as markers of protein-protein interaction.
    J Mol Biol, Vol. 311, No. 4. (24 August 2001), pp. 681-692.
    by E Sprinzak, H Margalit
    posted to interactome by maryee on 2006-10-17 04:19:38 as ** along with 8 people bicko chad_davis dyermd grahamc cjeans lilith wilbur Rhys
  • Pvclust: an R package for assessing the uncertainty in hierarchical clustering.
    Bioinformatics, Vol. 22, No. 12. (15 June 2006), pp. 1540-1542.
    by R Suzuki, H Shimodaira
    posted to microarray treetest by maryee on 2006-09-08 18:12:05 as ** along with 5 people jfr wnpx josepe ghattem elfar
  • A Gene-Coexpression Network for Global Discovery of Conserved Genetic Modules
    Science, Vol. 302, No. 5643. (10 October 2003), pp. 249-255.
    by Joshua M Stuart, Eran Segal, Daphne Koller, Stuart K Kim
    posted to microarray treetest by maryee on 2006-09-08 16:45:30 as ** along with 13 people and 5 groups dragonrez textoris lfriedl balajis nuke2005 tardigrade opheliav wnpx neveaire macle raylim lp2 karfunkel kdl Biostatistics Computational-Genomics Bioinformatics Neuroscience
  • Coexpression analysis of human genes across many microarray data sets.
    Genome Res, Vol. 14, No. 6. (June 2004), pp. 1085-1094.
    by HK Lee, AK Hsu, J Sajdak, J Qin, P Pavlidis
    posted to microarray treetest by maryee on 2006-09-08 16:43:50 as ** along with 11 people and 2 groups nedwards jo_davies gpalidwor giovanni jeremymiller hawkeyehammer grahamc macavity1g raylim sgoetz wilbur GeschwindLab Indigene
  • A systematic statistical linear modeling approach to oligonucleotide array experiments
    Mathematical Biosciences, Vol. 176, No. 1. (March 2002), pp. 35-51.
    by Tzu-Ming Chu, Bruce Weir, Russ Wolfinger
    posted to microarray treetest by maryee on 2006-09-08 01:10:21 as ** along with 1 person bertelsen
  • Assessing Gene Significance from cDNA Microarray Expression Data via Mixed Models
    J Comput Biol., Vol. 8, No. 6. (2001), pp. 625-637.
    by Wolfinger
    posted to microarray treetest by maryee on 2006-09-08 01:08:27 as **
  • Application of a priori established gene sets to discover biologically important differential expression in microarray data
    PNAS, Vol. 102, No. 43. (25 October 2005), pp. 15278-15279.
    by Andrea Bild, Phillip G Febbo
    posted to microarray treetest by maryee on 2006-08-22 06:09:26 as ** along with 3 people and 1 group srp33 ealloza jdiggans BioinfoCIPF
  • Linear models and empirical bayes methods for assessing differential expression in microarray experiments.
    Stat Appl Genet Mol Biol, Vol. 3, No. 1. (2004)
    by GK Smyth
    posted to microarray by maryee on 2006-07-17 00:56:34 as ** along with 5 people RMGraze mayercd justescaped ugengma heliopais
  • Use of within-array replicate spots for assessing differential expression in microarray experiments.
    Bioinformatics (18 January 2005)
    by Gordon K K Smyth, Joëlle Michaud, Hamish S S Scott
    posted to microarray by maryee on 2006-07-17 00:54:55 as ** along with 2 people mdimmic Dax42
  • Correspondence analysis of microarray time-course data in case-control design.
    J Biomed Inform, Vol. 37, No. 5. (October 2004), pp. 358-365.
    by Q Tan, K Brusgaard, TA Kruse, E Oakeley, B Hemmings, H Beck-Nielsen, L Hansen, M Gaster
    posted to microarray tb by maryee on 2006-07-14 00:17:41 as ****
  • A new closed multiple testing procedure for hierarchical families of hypotheses
    Journal of Statistical Planning and Inference, Vol. 46, No. 3. (15 August 1995), pp. 265-275.
    by Dror M Rom, Burt Holland
    posted to microarray by maryee on 2006-06-15 01:40:04 as **
  • The Control of the False Discovery Rate in Multiple Testing under Dependency
    Annals of Statistics (2001)
    by Y Benjamini, D Yekutieli
    posted to microarray by maryee on 2006-06-15 01:27:15 as **
  • Identifying differentially expressed genes using false discovery rate controlling procedures.
    Bioinformatics, Vol. 19, No. 3. (12 February 2003), pp. 368-375.
    by A Reiner, D Yekutieli, Y Benjamini
    posted to microarray by maryee on 2006-06-15 01:25:35 as ** along with 3 people RMGraze talponer shikin
  • Markov modelling of immunological and virological states in HIV-1 infected patients.
    Biom J, Vol. 47, No. 6. (December 2005), pp. 834-846.
    by E Mathieu, P Loup, P Dellamonica, JP Daures
    posted to hai by maryee on 2006-06-14 20:24:21 as **
  • notes Microarray analysis and tumor classification.
    N Engl J Med, Vol. 354, No. 23. (8 June 2006), pp. 2463-2472.
    by J Quackenbush
    posted to microarray by maryee on 2006-06-14 15:22:26 as ** along with 1 person and 1 group jeremymiller GeschwindLab
  • Clustering microarray gene expression data using weighted Chinese restaurant process.
    Bioinformatics (9 June 2006)
    by Zhaohui Qin
    posted to microarray by maryee on 2006-06-14 15:21:23 as ** along with 3 people jfr archroad bayes
  • Visualization methods for statistical analysis of microarray clusters.
    BMC Bioinformatics, Vol. 6 (2005)
    by MA Hibbs, NC Dirksen, K Li, OG Troyanskaya
    posted to microarray by maryee on 2006-06-14 15:19:49 as ** along with 4 people jyuh jfr smbaxtersf waszak
  • Towards precise classification of cancers based on robust gene functional expression profiles
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Zheng Guo, Tianwen Zhang, Xia Li, Qi Wang, Jianzhen Xu, Hui Yu, Jing Zhu, Haiyun Wang, Chenguang Wang, Eric Topol, Qing Wang, Shaoqi Rao
    posted to microarray by maryee on 2006-06-14 15:11:37 as ** along with 3 people jfr eckart_bindewald macavity1g
  • Mathematical modeling of the interrelationship of CD4 lymphocyte count and viral load changes induced by the protease inhibitor indinavir.
    Antimicrob Agents Chemother, Vol. 42, No. 2. (February 1998), pp. 358-361.
    by GL Drusano, DS Stein
    posted to hai by maryee on 2006-06-13 04:32:04 as **
  • Cost-effectiveness of screening for HIV in the era of highly active antiretroviral therapy.
    N Engl J Med, Vol. 352, No. 6. (10 February 2005), pp. 570-585.
    by GD Sanders, AM Bayoumi, V Sundaram, SP Bilir, CP Neukermans, CE Rydzak, LR Douglass, LC Lazzeroni, M Holodniy, DK Owens
    posted to hai by maryee on 2006-06-07 18:08:14 as **
  • Cluster analysis and display of genome-wide expression patterns.
    Proc Natl Acad Sci U S A, Vol. 95, No. 25. (8 December 1998), pp. 14863-14868.
    by MB Eisen, PT Spellman, PO Brown, D Botstein
    posted to microarray by maryee on 2006-06-07 04:48:26 as ** along with 18 people and 3 groups jo_davies macowell ggrot miguel textoris okarsligil pcahan1 lfriedl balajis nuke2005 lyongu wnpx nirfriedman dquest karfunkel dps kintoki kentz kdl Bioinformatics BUiGEM
  • PGC-1alpha-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes.
    Nat Genet, Vol. 34, No. 3. (July 2003), pp. 267-273.
    by VK Mootha, CM Lindgren, KF Eriksson, A Subramanian, S Sihag, J Lehar, P Puigserver, E Carlsson, M Ridderstråle, E Laurila, N Houstis, MJ Daly, N Patterson, JP Mesirov, TR Golub, P Tamayo, B Spiegelman, ES Lander, JN Hirschhorn, D Altshuler, LC Groop
    posted to microarray by maryee on 2006-06-04 01:12:10 as ** along with 6 people and 2 groups heliopais magusina dragonrez ealloza giovanni shikin BioinfoCIPF GeschwindLab
  • From the Cover: Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    PNAS, Vol. 102, No. 43. (25 October 2005), pp. 15545-15550.
    by Aravind Subramanian, Pablo Tamayo, Vamsi K Mootha, Sayan Mukherjee, Benjamin L Ebert, Michael A Gillette, Amanda Paulovich, Scott L Pomeroy, Todd R Golub, Eric S Lander, Jill P Mesirov
    posted to microarray by maryee on 2006-06-04 01:09:12 as ** along with 18 people and 4 groups srp33 dragonrez jfr balajis xwbcn hpiwowar aviad_work ealloza jdiggans jeremymiller frohike hawkeyehammer schuylrp natstreet heliopais shikin waghsk roys Bioinformatics BioinfoCIPF GeschwindLab Indigene
  • Using the Gene Ontology for Microarray Data Mining: A Comparison of Methods and Application to Age Effects in Human Prefrontal Cortex
    Neurochemical Research, Vol. 29, No. 6. (June 2004)
    by Paul
    posted to microarray by maryee on 2006-06-04 01:07:25 as **
  • A network-based analysis of systemic inflammation in humans
    Nature (31 August 2005)
    by Steve E Calvano, Wenzhong Xiao, Daniel R Richards, Ramon M Felciano, Henry V Baker, Raymond J Cho, Richard O Chen, Bernard H Brownstein, Perren J Cobb, Kevin S Tschoeke, Carol Miller-Graziano, Lyle L Moldawer, Michael N Mindrinos, Ronald W Davis, Ronald G Tompkins, Stephen F Lowry, Inflammation
    posted to microarray by maryee on 2006-06-04 00:58:34 as ** along with 11 people and 1 group jyuh textoris tuck VCKALIA nknii juliajumeau lhonigberg noano grahamc massivemayhem karfunkel TCR_Signaling
  • An integrative genomics approach to the reconstruction of gene networks in segregating populations.
    Cytogenet Genome Res, Vol. 105, No. 2-4. (2004), pp. 363-374.
    by J Zhu, PY Lum, J Lamb, D GuhaThakurta, SW Edwards, R Thieringer, JP Berger, MS Wu, J Thompson, AB Sachs, EE Schadt
    posted to microarray by maryee on 2006-06-04 00:57:51 as ** along with 3 people brant balicea jo_davies
  • Oncogenic pathway signatures in human cancers as a guide to targeted therapies
    Nature (06 November 2005)
    by Andrea H Bild, Guang Yao, Jeffrey T Chang, Quanli Wang, Anil Potti, Dawn Chasse, Mary-Beth Joshi, David Harpole, Johnathan M Lancaster, Andrew Berchuck, John A Olson, Jeffrey R Marks, Holly K Dressman, Mike West, Joseph R Nevins
    posted to microarray by maryee on 2006-06-04 00:56:25 as ** along with 11 people srp33 Yanno jyuh kentsis mfenner ajeffs tuck eckart_bindewald frohike Ao_Li2007 waghsk
  • Quantifying the relationship between co-expression, co-regulation and gene function.
    BMC Bioinformatics, Vol. 5 (25 February 2004)
    by DJ Allocco, IS Kohane, AJ Butte
    posted to microarray by maryee on 2006-06-04 00:54:42 as ** along with 1 person gpalidwor
  • Systematic survey reveals general applicability of "guilt-by-association" within gene coexpression networks.
    BMC Bioinformatics, Vol. 6 (2005)
    by CJ Wolfe, IS Kohane, AJ Butte
    posted to microarray by maryee on 2006-06-04 00:54:05 as ** along with 1 person balajis
  • Discovering statistically significant pathways in expression profiling studies.
    Proc Natl Acad Sci U S A, Vol. 102, No. 38. (20 September 2005), pp. 13544-13549.
    by L Tian, SA Greenberg, SW Kong, J Altschuler, IS Kohane, PJ Park
    posted to microarray by maryee on 2006-06-04 00:53:18 as ** along with 5 people and 1 group srp33 dragonrez ealloza frohike justescaped BioinfoCIPF
  • Using functional domain composition and support vector machines for prediction of protein subcellular location.
    J Biol Chem, Vol. 277, No. 48. (29 November 2002), pp. 45765-45769.
    by KC Chou, YD Cai
    posted to interactome by maryee on 2006-05-07 19:00:29 as **
  • Predicting protein--protein interactions from primary structure.
    Bioinformatics, Vol. 17, No. 5. (May 2001), pp. 455-460.
    by JR Bock, DA Gough
    posted to interactome by maryee on 2006-05-07 18:51:17 as ** along with 5 people wilbur iris_2001 leelarcombe cjeans Evangelia
  • A protein interaction map of Drosophila melanogaster.
    Science, Vol. 302, No. 5651. (5 December 2003), pp. 1727-1736.
    by L Giot, JS Bader, C Brouwer, A Chaudhuri, B Kuang, Y Li, YL Hao, CE Ooi, B Godwin, E Vitols, G Vijayadamodar, P Pochart, H Machineni, M Welsh, Y Kong, B Zerhusen, R Malcolm, Z Varrone, A Collis, M Minto, S Burgess, L McDaniel, E Stimpson, F Spriggs, J Williams, K Neurath, N Ioime, M Agee, E Voss, K Furtak, R Renzulli, N Aanensen, S Carrolla, E Bickelhaupt, Y Lazovatsky, A DaSilva, J Zhong, CA Stanyon, RL Finley, KP White, M Braverman, T Jarvie, S Gold, M Leach, J Knight, RA Shimkets, MP McKenna, J Chant, JM Rothberg
    posted to no-tag by maryee on 2006-05-02 04:22:01 as ** along with 10 people and 2 groups antonkratz dragonrez shivaram lfriedl nuke2005 lyongu sesejun xico memming eukfn kdl WetBiology
  • A Drosophila protein-interaction map centered on cell-cycle regulators.
    Genome Biol, Vol. 5, No. 12. (2004)
    by CA Stanyon, G Liu, BA Mangiola, N Patel, L Giot, B Kuang, H Zhang, J Zhong, RL Finley
    posted to no-tag by maryee on 2006-05-02 04:20:08 as ** along with 2 people sesejun eukfn
  • Analysis of the human protein interactome and comparison with yeast, worm and fly interaction datasets.
    Nature Genetics, Vol. 38, No. 3., pp. 285-293.
    by Gandhi
    posted to no-tag by maryee on 2006-04-26 00:21:53 as ** along with 1 person grahamc
  • C. elegans ORFeome version 1.1: experimental verification of the genome annotation and resource for proteome-scale protein expression.
    Nat Genet, Vol. 34, No. 1. (May 2003), pp. 35-41.
    by J Reboul, P Vaglio, JF Rual, P Lamesch, M Martinez, CM Armstrong, S Li, L Jacotot, N Bertin, R Janky, T Moore, JR Hudson, JL Hartley, MA Brasch, J Vandenhaute, S Boulton, GA Endress, S Jenna, E Chevet, V Papasotiropoulos, PP Tolias, J Ptacek, M Snyder, R Huang, MR Chance, H Lee, L Doucette-Stamm, DE Hill, M Vidal
    posted to no-tag by maryee on 2006-04-25 22:30:47 as ** along with 1 person and 1 group kaspermunch Bioinformatics
  • WormBase: a comprehensive data resource for Caenorhabditis biology and genomics.
    Nucleic Acids Res, Vol. 33, No. Database Issue. (1 January 2005)
    by Nansheng Chen, Todd W W Harris, Igor Antoshechkin, Carol Bastiani, Tamberlyn Bieri, Darin Blasiar, Keith Bradnam, Payan Canaran, Juancarlos Chan, Chao-Kung K Chen, Wen J J Chen, Fiona Cunningham, Paul Davis, Eimear Kenny, Ranjana Kishore, Daniel Lawson, Raymond Lee, Hans-Michael M Muller, Cecilia Nakamura, Shraddha Pai, Philip Ozersky, Andrei Petcherski, Anthony Rogers, Aniko Sabo, Erich M M Schwarz, Kimberly Van Auken, Qinghua Wang, Richard Durbin, John Spieth, Paul W W Sternberg, Lincoln D D Stein
    posted to no-tag by maryee on 2006-04-25 22:23:06 as ** along with 3 people rklancer nuke2005 GustavoLacerda
  • A Map of the Interactome Network of the Metazoan C. elegans
    Science, Vol. 303, No. 5657. (23 January 2004), pp. 540-543.
    by Siming Li, Christopher M Armstrong, Nicolas Bertin, Hui Ge, Stuart Milstein, Mike Boxem, Pierre-Olivier Vidalain, Jing-Dong J Han, Alban Chesneau, Tong Hao, Debra S Goldberg, Ning Li, Monica Martinez, Jean-Francois Rual, Philippe Lamesch, Lai Xu, Muneesh Tewari, Sharyl L Wong, Lan V Zhang, Gabriel F Berriz, Laurent Jacotot, Philippe Vaglio, Jerome Reboul, Tomoko Hirozane-Kishikawa, Qianru Li, Harrison W Gabel, Ahmed Elewa, Bridget Baumgartner, Debra J Rose, Haiyuan Yu, Stephanie Bosak, Reynaldo Sequerra, Andrew Fraser, Susan E Mango, William M Saxton, Susan Strome, Sander van den Heuvel, Fabio Piano, Jean Vandenhaute, Claude Sardet, Mark Gerstein, Lynn Doucette-Stamm, Kristin C Gunsalus, Wade J Harper, Michael E Cusick, Frederick P Roth, David E Hill, Marc Vidal
    posted to no-tag by maryee on 2006-04-25 22:16:14 as **
  • FDI and the Capital Intensity of Dirty Sectors: A Missing Piece of the Pollution Haven Puzzle
    Review of Development Economics, Vol. 9, No. 4. (November 2005), pp. 530-548.
    by Matthew A Cole, Robert J Elliott
    posted to no-tag by maryee on 2006-04-12 14:52:19 as **
  • Statistical properties of the volatility of price fluctuations
    Physical Review Letters, Vol. 60, No. 2.
    by Yanhui
    posted to finance volatility by maryee on 2006-03-20 20:19:55 as **
  • CDD: a curated Entrez database of conserved domain alignments.
    Nucleic Acids Res, Vol. 31, No. 1. (1 January 2003), pp. 383-387.
    by A Marchler-Bauer, JB Anderson, C DeWeese-Scott, ND Fedorova, LY Geer, S He, DI Hurwitz, JD Jackson, AR Jacobs, CJ Lanczycki, CA Liebert, C Liu, T Madej, GH Marchler, R Mazumder, AN Nikolskaya, AR Panchenko, BS Rao, BA Shoemaker, V Simonyan, JS Song, PA Thiessen, S Vasudevan, Y Wang, RA Yamashita, JJ Yin, SH Bryant
    posted to accelerating_mapping by maryee on 2006-03-19 17:05:31 as ** along with 2 people balajis cjeans
  • What do we learn from high-throughput protein interaction data?
    Expert Rev Proteomics, Vol. 1, No. 1. (June 2004), pp. 111-121.
    by B Titz, M Schlesner, P Uetz
    posted to interactome by maryee on 2006-03-04 23:55:21 as ** along with 3 people kuhn grahamc wilbur
  • Interactome: gateway into systems biology.
    Hum Mol Genet, Vol. 14 Spec No. 2 (15 October 2005)
    by ME Cusick, N Klitgord, M Vidal, DE Hill
    posted to interactome by maryee on 2006-02-17 16:38:24 as **** along with 8 people and 2 groups kuhn wnpx gandhih jdiggans braingrind grahamc dejori wilbur ic4 generif_paper
  • Intronic sequences flanking alternatively spliced exons are conserved between human and mouse.
    Genome Res, Vol. 13, No. 7. (July 2003), pp. 1631-1637.
    by R Sorek, G Ast
    posted to no-tag by maryee on 2006-02-14 04:56:25 as ***** along with 1 person radek
  • Conserved sequence elements associated with exon skipping.
    Nucleic Acids Res, Vol. 31, No. 7. (1 April 2003), pp. 1974-1983.
    by E Miriami, H Margalit, R Sperling
    posted to rna splicing by maryee on 2006-02-13 22:37:30 as ***
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