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margaritis's transcription [35 articles]

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  • RNA Polymerase Elongation Factors
    Annual Review of Microbiology, Vol. 62, No. 1. (2008)
    by Jeffrey W Roberts, Smita Shankar, Joshua J Filter
    posted to elongation regulation review transcription by margaritis on 2008-08-26 16:13:40 as **
  • The transcriptional cycle of HIV-1 in real-time and live cells.
    J Cell Biol, Vol. 179, No. 2. (22 October 2007), pp. 291-304.
    by S Boireau, P Maiuri, E Basyuk, M de la Mata, A Knezevich, B Pradet-Balade, V Bäcker, A Kornblihtt, A Marcello, E Bertrand
    posted to elongation experiment pauses transcription by margaritis on 2008-07-10 17:01:41 as ** along with 2 people sebastien_vigneau RedmondSmyth
  • Identification In Vivo of Different Rate-Limiting Steps Associated with Transcriptional Activators in the Presence and Absence of a GAGA Element
    Mol. Cell. Biol., Vol. 25, No. 9. (1 May 2005), pp. 3543-3552.
    by Yunyuan V Wang, Hongbing Tang, David S Gilmour
    posted to initiation pause promoter-proximal transcription by margaritis on 2008-07-03 12:14:14 as **
  • Transient Reversal of RNA Polymerase II Active Site Closing Controls Fidelity of Transcription Elongation
    Molecular Cell, Vol. 30, No. 5. (5 June 2008), pp. 557-566.
    by Maria L Kireeva, Yuri A Nedialkov, Gina H Cremona, Yuri A Purtov, Lucyna Lubkowska, Francisco Malagon, Zachary F Burton, Jeffrey N Strathern, Mikhail Kashlev
    posted to fidelity transcription by margaritis on 2008-06-05 17:49:40 as **
  • Evolvability and hierarchy in rewired bacterial gene networks
    Nature, Vol. 452, No. 7189. (17 April 2008), pp. 840-845.
    by Mark Isalan, Caroline Lemerle, Konstantinos Michalodimitrakis, Carsten Horn, Pedro Beltrao, Emanuele Raineri, Mireia Garriga-Canut, Luis Serrano
    posted to evolvability gene-circuits gene-expression gene-networks regulation transcription by margaritis on 2008-05-09 13:23:46 as ** along with 18 people and 4 groups aalibes tmmurali dullhunk neils cmzmasek AbnerCYH josedavid biehl caseybrown Garamonfok austin hryk dbikard cactus chad_davis michaelbarton aheilbut zwang GEB Centre de Recherches Interdisciplinaires SynBioSys BergmanLab
  • Poised Polymerases: On Your Mark...Get Set...Go!
    Molecular Cell, Vol. 30, No. 1. (11 April 2008), pp. 7-10.
    by David H Price
    posted to elongation regulation review transcription by margaritis on 2008-04-16 15:33:22 as **
  • Applied force reveals mechanistic and energetic details of transcription termination.
    Cell, Vol. 132, No. 6. (21 March 2008), pp. 971-982.
    by MH Larson, WJ Greenleaf, R Landick, SM Block
    posted to single-molecule termination transcription by margaritis on 2008-04-14 13:47:45 as ** along with 1 person and 1 group samjlord moernerlab
  • Transcriptional control of noise in gene expression
    Proceedings of the National Academy of Sciences (19 March 2008), 0707904105.
    by Alvaro Sanchez, Jane Kondev
    posted to noise regulation stochasticity theory transcription by margaritis on 2008-04-07 10:58:23 as ** along with 7 people jjray balabu lambda ddcttrl austin sbottani inesdesantiago
  • Transcription Regulation Through Promoter-Proximal Pausing of RNA Polymerase II
    Science, Vol. 319, No. 5871. (28 March 2008), pp. 1791-1792.
    by Leighton J Core, John T Lis
    posted to pause pauses regulation transcription by margaritis on 2008-03-28 12:37:15 as ** along with 2 people and 1 group skoch3 biomcgary Koch_Lab
  • A chromatin landmark and transcription initiation at most promoters in human cells.
    Cell, Vol. 130, No. 1. (13 July 2007), pp. 77-88.
    by MG Guenther, SS Levine, LA Boyer, R Jaenisch, RA Young
    posted to elongation initiation regulation transcription by margaritis on 2008-03-19 18:20:03 as ** along with 1 person inesdesantiago
  • The nuclear envelope and transcriptional control
    Nature Reviews Genetics, Vol. 8, No. 7. (05 June 2007), pp. 507-517.
    by Asifa Akhtar, Susan M Gasser
    posted to control dna regulation transcription by margaritis on 2008-03-18 11:35:26 as ** along with 2 people and 2 groups dchughes ajgentles G4ID Genetics-of-Gambling
  • RNA polymerase is poised for activation across the genome
    Nature Genetics, Vol. 39, No. 12. (11 November 2007), pp. 1507-1511.
    by Ginger W Muse, Daniel A Gilchrist, Sergei Nechaev, Ruchir Shah, Joel S Parker, Sherry F Grissom, Julia Zeitlinger, Karen Adelman
    posted to elongation pauses regulation rnap transcription by margaritis on 2008-03-03 12:30:01 as read along with 4 people and 1 group rschulz skoch3 caseybrown mikaelhuss Koch_Lab
  • Concurrent Fast and Slow Cycling of a Transcriptional Activator at an Endogenous Promoter
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 466-469.
    by Tatiana S Karpova, Min J Kim, Corentin Spriet, Kip Nalley, Timothy J Stasevich, Zoulika Kherrouche, Laurent Heliot, James G Mcnally
    posted to binding dna promoter transcription transcription-factor by margaritis on 2008-01-30 10:55:28 as ***** along with 3 people djkt cjeans caseybrown
  • Analysis of Promoter Targets for Escherichia coli Transcription Elongation Factor GreA In Vivo and In Vitro
    J. Bacteriol., Vol. 189, No. 24. (15 December 2007), pp. 8772-8785.
    by Ekaterina Stepanova, Jookyung Lee, Maria Ozerova, Ekaterina Semenova, Kirill Datsenko, Barry L Wanner, Konstantin Severinov, Sergei Borukhov
    posted to backtracking grea pauses transcription by margaritis on 2008-01-25 18:40:14 as **** along with 1 person operon
  • Fluctuations, pauses and backtracking in DNA transcription
    Biophys. J. (24 August 2007), biophysj.107.105767.
    by Margaritis Voliotis, Netta Cohen, Carmen Molina-Paris, Tanniemola Liverpool
    posted to backtracking fluctuations noise stochasticity transcription by margaritis on 2008-01-09 11:22:22 as ****
  • Single-molecule tracking of mRNA exiting from RNA polymerase II.
    Proc Natl Acad Sci U S A (28 December 2007)
    by Joanna Andrecka, Robert Lewis, Florian Brückner, Elisabeth Lehmann, Patrick Cramer, Jens Michaelis
    posted to mrnap polymerase rnap transcription by margaritis on 2008-01-09 11:21:50 as **** along with 1 person yusdi
  • Merging the RNA and DNA worlds
    Nat Struct Mol Biol, Vol. 14, No. 12. (December 2007), pp. 1122-1123.
    by Irina Artsimovitch, Dmitry G Vassylyev
    posted to pol_ii rnap transcription by margaritis on 2007-12-05 18:08:10 as **
  • Mechanism of transcriptional stalling at cisplatin-damaged DNA
    Nat Struct Mol Biol, Vol. 14, No. 12. (December 2007), pp. 1127-1133.
    by Gerke E Damsma, Aaron Alt, Florian Brueckner, Thomas Carell, Patrick Cramer
    posted to pause rnap stalling transcription by margaritis on 2007-12-05 17:50:07 as **
  • Bacterial RNA polymerases: the wholo story.
    Curr Opin Struct Biol, Vol. 13, No. 1. (February 2003), pp. 31-39.
    by KS Murakami, SA Darst
    posted to rnap transcription by margaritis on 2007-12-04 18:15:47 as *** along with 1 person cassj
  • The Active Site of RNA Polymerase II Participates in Transcript Cleavage Within Arrested Ternary Complexes
    Proceedings of the National Academy of Sciences, Vol. 91, No. 17. (16 August 1994), pp. 8057-8061.
    by Md Rudd, Mg Izban, Ds Luse
    posted to cleavage pol_ii transcription by margaritis on 2007-10-09 18:17:29 as **
  • RNA polymerase marching backward.
    Science, Vol. 259, No. 5097. (12 February 1993), pp. 944-945.
    by GA Kassavetis, EP Geiduschek
    posted to backtracking proofreading transcription by margaritis on 2007-10-09 18:04:06 as **
  • Fidelity of RNA polymerase II transcription controlled by elongation factor TFIIS
    Proceedings of the National Academy of Sciences, Vol. 93, No. 24. (26 November 1996), pp. 13677-13682.
    by Choonju Jeon, Kan Agarwal
    posted to cleavage pol_ii proofreading tfiis transcription by margaritis on 2007-10-09 17:04:57 as **
  • Spontaneous Cleavage of RNA in Ternary Complexes of Escherichia coli RNA Polymerase and Its Significance for the Mechanism of Transcription
    Proceedings of the National Academy of Sciences, Vol. 88, No. 18. (15 September 1991), pp. 7983-7987.
    by Ck Surratt, Sc Milan, Mj Chamberlin
    posted to cleavage ecoli proofreading rnap transcription by margaritis on 2007-10-09 16:19:18 as **
  • An RNA polymerase mutant with reduced accuracy of chain elongation.
    Biochemistry, Vol. 25, No. 20. (7 October 1986), pp. 5920-5928.
    by A Blank, JA Gallant, RR Burgess, LA Loeb
    posted to error_rate experiment kinetic_proofreading proofreading transcription by margaritis on 2007-10-09 14:46:52 as read
  • Transcriptional proofreading in Escherichia coli.
    EMBO J, Vol. 8, No. 10. (October 1989), pp. 3153-3158.
    by RT Libby, JL Nelson, JM Calvo, JA Gallant
    posted to kinetic_proofreading proofreading transcription by margaritis on 2007-10-09 14:23:48 as **
  • RNA polymerase II transcription in living color
    Nature Structural & Molecular Biology, Vol. 14, No. 9., pp. 788-790.
    by Angus I Lamond, Jason R Swedlow
    posted to news_and_views pause rnap transcription by margaritis on 2007-09-07 11:23:09 as *****
  • In vivo dynamics of RNA polymerase II transcription.
    Nat Struct Mol Biol (5 August 2007)
    by Xavier Darzacq, Yaron Shav-Tal, Valeria de Turris, Yehuda Brody, Shailesh M M Shenoy, Robert D D Phair, Robert H H Singer
    posted to experiment in-vivo pause rnap transcription by margaritis on 2007-09-07 11:21:53 as ***** along with 5 people and 3 groups jjray dpollard dchughes madhadron cwbrown EisenLab G4ID Genetics-of-Gambling
  • A Chromatin Landmark and Transcription Initiation at Most Promoters in Human Cells
    Cell, Vol. 130, No. 1. (13 July 2007), pp. 77-88.
    by Matthew G Guenther, Stuart S Levine, Laurie A Boyer, Rudolf Jaenisch, Richard A Young
    posted to chromatin elongation initiation transcription by margaritis on 2007-07-26 19:11:09 as *** along with 1 person cabbagezs
  • Rapid spontaneous accessibility of nucleosomal DNA
    Nature Structural & Molecular Biology, Vol. 12, No. 1. (05 December 2004), 46.
    by Gu Li, Marcia Levitus, Carlos Bustamante, Jonathan Widom
    posted to dna nucleosomes transcription by margaritis on 2007-07-19 15:01:41 as **
  • Structural basis for substrate loading in bacterial RNA polymerase
    Nature (20 June 2007)
    by Dmitry G Vassylyev, Marina N Vassylyeva, Jinwei Zhang, Murali Palangat, Irina Artsimovitch, Robert Landick
    posted to elongation rnap structure transcription by margaritis on 2007-07-18 11:30:09 as ** along with 2 people zwang Jporci
  • Structural basis for transcription elongation by bacterial RNA polymerase
    Nature (20 June 2007)
    by Dmitry G Vassylyev, Marina N Vassylyeva, Anna Perederina, Tahir H Tahirov, Irina Artsimovitch
    posted to elongation rnap structure transcription by margaritis on 2007-07-18 11:29:56 as read along with 2 people zwang Jporci
  • REPLICATION AND TRANSCRIPTION: SHAPING THE LANDSCAPE OF THE GENOME
    Nat Rev Genet, Vol. 6, No. 9. (2005), pp. 669-677.
    by Lyubomira Chakalova, Emmanuel Debrand, Jennifer A Mitchell, Cameron S Osborne, Peter Fraser
    posted to review transcription by margaritis on 2007-06-11 15:07:22 as ** along with 4 people and 2 groups bala xico gloria xingxu WetBiology DictyosteliumGroup
  • Eukaryotic Transcription: What Does It Mean for a Gene to Be 'on'?
    Current Biology, Vol. 16, No. 10. (23 May 2006), pp. R371-R373.
    by Ido Golding, Edward C Cox
    posted to bursting fluctuations noise stochasticity transcription by margaritis on 2007-05-06 17:42:32 as read along with 1 person and 1 group cmm FAB-lab
  • Transcriptional Pulsing of a Developmental Gene
    Current Biology, Vol. 16, No. 10. (23 May 2006), pp. 1018-1025.
    by Jonathan R Chubb, Tatjana Trcek, Shailesh M Shenoy, Robert H Singer
    posted to bursting fluctuations gene-expression noise promoter stochasticity transcription by margaritis on 2007-03-08 21:00:34 as read along with 3 people and 1 group emilyhare qfwills jjray EisenLab
  • Transcriptional noise and the fidelity of initiation by RNA polymerase II
    Nature Structural & Molecular Biology, Vol. 14, No. 2., pp. 103-105.
    by Kevin Struhl
    posted to commentary transcription yeast by margaritis on 2007-03-02 16:52:17 as read along with 3 people and 2 groups dchughes uz_labu_laimi siebert G4ID Genetics-of-Gambling
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