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margaritis's library [191 articles]

最近录入 margaritis's 文献库:按阅读优先等级排序.
  • Concurrent Fast and Slow Cycling of a Transcriptional Activator at an Endogenous Promoter
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 466-469.
    by Tatiana S Karpova, Min J Kim, Corentin Spriet, Kip Nalley, Timothy J Stasevich, Zoulika Kherrouche, Laurent Heliot, James G Mcnally
    posted to binding dna promoter transcription transcription-factor by margaritis on 2008-01-30 10:55:28 as ***** along with 3 people djkt cjeans caseybrown
  • The Frequency Dependence of Osmo-Adaptation in Saccharomyces cerevisiae
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 482-484.
    by Jerome T Mettetal, Dale Muzzey, Carlos Gomez-Uribe, Alexander van Oudenaarden
    posted to gene-circuits gene-expression gene-networks gene-regulation negative_feedback by margaritis on 2008-01-30 10:54:02 as ***** along with 5 people brianb bayesian cjeans cactus biomcgary
  • Effects of Molecular Memory and Bursting on Fluctuations in Gene Expression
    Science, Vol. 319, No. 5861. (18 January 2008), pp. 339-343.
    by Juan M Pedraza, Johan Paulsson
    posted to bursting fluctuations gene-expression noise stochasticity by margaritis on 2008-01-18 11:07:20 as ***** along with 7 people ddcttrl balicea cjeans heliopais roys sb_journal_club rschulz
  • Dynamical quorum sensing: Population density encoded in cellular dynamics
    Proceedings of the National Academy of Sciences, Vol. 104, No. 47. (20 November 2007), pp. 18377-18381.
    by Silvia De Monte, Francesco D'ovidio, Sune Dano, Preben G Sorensen
    posted to fluctuations population_density quorum_sensing by margaritis on 2007-11-21 11:04:41 as *****
  • Dissecting Timing Variability in Yeast Meiosis
    Cell, Vol. 131, No. 3. (2 November 2007), pp. 544-556.
    by Iftach Nachman, Aviv Regev, Sharad Ramanathan
    posted to experiment fluctuations meiosis noise stochasticity yeast by margaritis on 2007-11-07 17:36:48 as ***** along with 2 people and 1 group dpollard balabu EisenLab
  • RNA polymerase II transcription in living color
    Nature Structural & Molecular Biology, Vol. 14, No. 9., pp. 788-790.
    by Angus I Lamond, Jason R Swedlow
    posted to news_and_views pause rnap transcription by margaritis on 2007-09-07 11:23:09 as *****
  • In vivo dynamics of RNA polymerase II transcription.
    Nat Struct Mol Biol (5 August 2007)
    by Xavier Darzacq, Yaron Shav-Tal, Valeria de Turris, Yehuda Brody, Shailesh M M Shenoy, Robert D D Phair, Robert H H Singer
    posted to experiment in-vivo pause rnap transcription by margaritis on 2007-09-07 11:21:53 as ***** along with 5 people and 3 groups jjray dpollard dchughes madhadron cwbrown EisenLab G4ID Genetics-of-Gambling
  • Combinatorial promoter design for engineering noisy gene expression
    PNAS (24 July 2007), 0608451104.
    by Kevin F Murphy, Gabor Balazsi, James J Collins
    posted to experiment fluctuations gene-expression noise stochasticity yeast by margaritis on 2007-08-01 12:17:17 as ***** along with 1 person jjray
  • Analysis of Promoter Targets for Escherichia coli Transcription Elongation Factor GreA In Vivo and In Vitro
    J. Bacteriol., Vol. 189, No. 24. (15 December 2007), pp. 8772-8785.
    by Ekaterina Stepanova, Jookyung Lee, Maria Ozerova, Ekaterina Semenova, Kirill Datsenko, Barry L Wanner, Konstantin Severinov, Sergei Borukhov
    posted to backtracking grea pauses transcription by margaritis on 2008-01-25 18:40:14 as **** along with 1 person operon
  • Fluctuations, pauses and backtracking in DNA transcription
    Biophys. J. (24 August 2007), biophysj.107.105767.
    by Margaritis Voliotis, Netta Cohen, Carmen Molina-Paris, Tanniemola Liverpool
    posted to backtracking fluctuations noise stochasticity transcription by margaritis on 2008-01-09 11:22:22 as ****
  • Single-molecule tracking of mRNA exiting from RNA polymerase II.
    Proc Natl Acad Sci U S A (28 December 2007)
    by Joanna Andrecka, Robert Lewis, Florian Brückner, Elisabeth Lehmann, Patrick Cramer, Jens Michaelis
    posted to mrnap polymerase rnap transcription by margaritis on 2008-01-09 11:21:50 as **** along with 1 person yusdi
  • How gene order is influenced by the biophysics of transcription regulation
    PNAS (20 August 2007), 0700672104.
    by Grigory Kolesov, Zeba Wunderlich, Olga N Laikova, Mikhail S Gelfand, Leonid A Mirny
    posted to dna genome organisation transcription-factor by margaritis on 2007-09-04 14:42:14 as **** along with 6 people jjray madhadron zwang Jporci maximilianh lambda
  • Bistability in bacteria
    Molecular Microbiology, Vol. 61, No. 3. (August 2006), pp. 564-572.
    by Dubnau, David, Losick, Richard
    posted to bacteria bistability bsubtilis competence by margaritis on 2008-03-25 15:22:50 as *** along with 1 person balabu
  • Gene expression dynamics in the macrophage exhibit criticality
    Proceedings of the National Academy of Sciences, Vol. 105, No. 6. (12 February 2008), pp. 1897-1900.
    by Matti Nykter, Nathan D Price, Maximino Aldana, Stephen A Ramsey, Stuart A Kauffman, Leroy E Hood, Olli Yli-Harja, Ilya Shmulevich
    posted to adaptability criticality gene-expression robustness by margaritis on 2008-02-15 09:35:50 as ***
  • Bacterial RNA polymerases: the wholo story.
    Curr Opin Struct Biol, Vol. 13, No. 1. (February 2003), pp. 31-39.
    by KS Murakami, SA Darst
    posted to rnap transcription by margaritis on 2007-12-04 18:15:47 as *** along with 1 person cassj
  • Molecular level stochastic model for competence cycles in Bacillus subtilis
    Proceedings of the National Academy of Sciences, Vol. 104, No. 45. (6 November 2007), pp. 17582-17587.
    by Daniel Schultz, Ben, Jose N Onuchic, Peter G Wolynes
    posted to bsubtilis competence fluctuations noise stochasticity by margaritis on 2007-11-07 17:44:50 as *** along with 3 people jjray balabu lshaw
  • Transcriptional fidelity and proofreading in Archaea and implications for the mechanism of TFS-induced RNA cleavage
    Molecular Microbiology, Vol. 52, No. 4. (2004), pp. 1133-1143.
    by Udo Lange, Winfried Hausner
    posted to archaea_pol backtracking cleavage proofreading tfs by margaritis on 2007-10-09 17:36:16 as ***
  • Symmetry and Stochastic Gene Regulation
    Physical Review Letters, Vol. 99, No. 10. (2007)
    by Alexandre F Ramos, José EM Hornos
    posted to fluctuations gene-expression noise stochasticity theory by margaritis on 2007-10-05 12:40:56 as ***
  • Synchrony Dynamics During Initiation, Failure, and Rescue of the Segmentation Clock
    Science, Vol. 317, No. 5846. (28 September 2007), pp. 1911-1915.
    by Ingmar H Riedel-Kruse, Claudia Muller, Andrew C Oates
    posted to development fluctuations gene-networks noise robustness by margaritis on 2007-10-05 12:19:37 as *** along with 2 people balabu heliopais
  • Enzymatic capture of an extrahelical thymine in the search for uracil in DNA
    Nature (19 August 2007)
    by Jared B Parker, Mario A Bianchet, Daniel J Krosky, Joshua I Friedman, Mario L Amzel, James T Stivers
    posted to dna proofreading uracil by margaritis on 2007-10-04 13:51:17 as ***
  • Intrinsic Transcript Cleavage Activity of RNA Polymerase
    Proceedings of the National Academy of Sciences, Vol. 92, No. 10. (9 May 1995), pp. 4596-4600.
    by M Orlova, J Newlands, A Das, A Goldfarb, S Borukhov
    posted to proofreading rnap by margaritis on 2007-09-11 16:59:16 as ***
  • GreA Protein: A Transcription Elongation Factor from Escherichia coli
    Proceedings of the National Academy of Sciences, Vol. 89, No. 19. (1 October 1992), pp. 8899-8902.
    by S Borukhov, A Polyakov, V Nikiforov, A Goldfarb
    posted to proofreading rnap by margaritis on 2007-09-11 16:56:25 as ***
  • Transcriptional Fidelity and Proofreading by RNA Polymerase II
    Cell, Vol. 93, No. 4. (15 May 1998), pp. 627-637.
    by Matthew J Thomas, Angelina A Platas, Diane K Hawley
    posted to pol_ii proofreading by margaritis on 2007-09-11 16:55:58 as ***
  • Multiple RNA polymerase conformations and GreA: control of the fidelity of transcription
    Science, Vol. 262, No. 5135. (5 November 1993), pp. 867-873.
    by Da Erie, O Hajiseyedjavadi, Mc Young, Ph von Hippel
    posted to gre proofreading rnap by margaritis on 2007-09-11 16:51:26 as ***
  • Living with Noisy Genes: How Cells unction Reliably with Inherent Variability in Gene Expression
    Annual Review of Biophysics and Biomolecular Structure, Vol. 36, No. 1., 413.
    by Maheshri
    posted to fluctuations noise review stochasticity by margaritis on 2007-09-07 13:33:15 as ***
  • Physics of transport and traffic phenomena in biology: from molecular motors and cells to organisms
    Physics of Life Reviews, Vol. 2, No. 4. (December 2005), pp. 318-352.
    by Debashish Chowdhury, Andreas Schadschneider, Katsuhiro Nishinari
    posted to traffic_model by margaritis on 2007-09-06 16:29:20 as *** along with 1 person rahulthadani
  • A hybrid multiscale Monte Carlo algorithm (HyMSMC) to cope with disparity in time scales and species populations in intracellular networks
    BMC Bioinformatics, Vol. 8 (24 May 2007), 175.
    by Asawari Samant, Babatunde A Ogunnaike, Dionisios G Vlachos
    posted to fluctuations noise stochasticity stochastic_simulations theory by margaritis on 2007-08-31 18:02:40 as ***
  • Stress Management: How Cells Take Control of Their Transposons
    Molecular Cell, Vol. 27, No. 2. (20 July 2007), pp. 180-181.
    by Hirotaka Ebina, Henry L Levin
    posted to news_and_views by margaritis on 2007-08-01 11:21:52 as *** along with 1 person dchughes
  • A Chromatin Landmark and Transcription Initiation at Most Promoters in Human Cells
    Cell, Vol. 130, No. 1. (13 July 2007), pp. 77-88.
    by Matthew G Guenther, Stuart S Levine, Laurie A Boyer, Rudolf Jaenisch, Richard A Young
    posted to chromatin elongation initiation transcription by margaritis on 2007-07-26 19:11:09 as *** along with 1 person cabbagezs
  • Noise in Gene Expression Determines Cell Fate in Bacillus subtilis.
    Science (14 June 2007)
    by Hédia Maamar, Arjun Raj, David Dubnau
    posted to bsubtilis experiment fluctuations noise stochasticity by margaritis on 2007-07-09 18:06:07 as *** along with 4 people jjray sebastien_vigneau cjeans cabbagezs
  • Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations.
    Biophys J, Vol. 81, No. 6. (December 2001), pp. 3116-3136.
    by TB Kepler, TC Elston
    posted to fluctuations noise stochasticity theory by margaritis on 2007-05-01 16:44:54 as *** along with 2 people monod jjray
  • Phenotypic Consequences of Promoter-Mediated Transcriptional Noise
    Molecular Cell, Vol. 24, No. 6. (28 December 2006), pp. 853-865.
    by William J Blake, Gabor Balazsi, Michael A Kohanski, Farren J Isaacs, Kevin F Murphy, Yina Kuang, Charles R Cantor, David R Walt, James J Collins
    posted to bursting experiment noise phenotype promoter stochasticity by margaritis on 2007-03-27 13:41:53 as *** along with 3 people and 1 group emilyhare dbikard timflutre EisenLab
  • Coherence and Timing of Cell Cycle Start Examined at Single-Cell Resolution
    Molecular Cell, Vol. 21 (2006), pp. 3-14.
    by Bean
    posted to yeast single-cell gene-expression by margaritis on 2007-01-10 12:25:47 as ***
  • Identification In Vivo of Different Rate-Limiting Steps Associated with Transcriptional Activators in the Presence and Absence of a GAGA Element
    Mol. Cell. Biol., Vol. 25, No. 9. (1 May 2005), pp. 3543-3552.
    by Yunyuan V Wang, Hongbing Tang, David S Gilmour
    posted to transcription promoter-proximal pause initiation by margaritis on 2008-07-03 12:14:14 as **
  • CELL-CELL COMMUNICATION IN GRAM-POSITIVE BACTERIA
    Annual Review of Microbiology, Vol. 51, No. 1. (1997), pp. 527-564.
    by Gary M Dunny, Bettina AB Leonard
    posted to cell_singalling bacteria by margaritis on 2008-06-25 17:23:08 as **
  • Listening in on bacteria: acyl-homoserine lactone signalling
    Nat Rev Mol Cell Biol, Vol. 3, No. 9. (2002), pp. 685-695.
    by Clay Fuqua, Peter E Greenberg
    posted to cell_singalling bacteria by margaritis on 2008-06-25 16:54:49 as **
  • BIOCHEMISTRY: How Enzymes Work
    Science, Vol. 320, No. 5882. (13 June 2008), pp. 1428-1429.
    by Dagmar Ringe, Gregory A Petsko
    posted to enzymes catalysis_mechanism active_site by margaritis on 2008-06-13 12:03:55 as ** along with 4 people reyez balicea dullhunk paulschlesinger
  • Cooperativity and Specificity in Enzyme Kinetics: A Single-Molecule Time-based Perspective
    Biophys. J. (25 April 2008), biophysj.108.131771.
    by Hong Qian
    posted to rate_reactions kinetic_proofreading by margaritis on 2008-06-12 15:59:59 as ** along with 1 person paulschlesinger
  • Stochastic spineless expression creates the retinal mosaic for colour vision
    Nature, Vol. 440, No. 7081., pp. 174-180.
    by Mathias F Wernet, Esteban O Mazzoni, Arzu Ãelik, Dianne M Duncan, Ian Duncan, Claude Desplan
    posted to vision stochasticity gene-expression development by margaritis on 2008-06-10 15:30:40 as **
  • Transient Reversal of RNA Polymerase II Active Site Closing Controls Fidelity of Transcription Elongation
    Molecular Cell, Vol. 30, No. 5. (5 June 2008), pp. 557-566.
    by Maria L Kireeva, Yuri A Nedialkov, Gina H Cremona, Yuri A Purtov, Lucyna Lubkowska, Francisco Malagon, Zachary F Burton, Jeffrey N Strathern, Mikhail Kashlev
    posted to transcription fidelity by margaritis on 2008-06-05 17:49:40 as **
  • Evolvability and hierarchy in rewired bacterial gene networks
    Nature, Vol. 452, No. 7189. (17 April 2008), pp. 840-845.
    by Mark Isalan, Caroline Lemerle, Konstantinos Michalodimitrakis, Carsten Horn, Pedro Beltrao, Emanuele Raineri, Mireia Garriga-Canut, Luis Serrano
    posted to transcription regulation gene-networks gene-expression gene-circuits evolvability by margaritis on 2008-05-09 13:23:46 as ** along with 15 people and 4 groups michaelbarton austin AbnerCYH hryk cactus dbikard Garamonfok caseybrown biehl aalibes tmmurali dullhunk neils cmzmasek josedavid BergmanLab SynBioSys Centre de Recherches Interdisciplinaires GEB
  • Colored extrinsic fluctuations and stochastic gene expression
    Mol Syst Biol, Vol. 4 (6 May 2008)
    by Vahid Shahrezaei, Julien F Ollivier, Peter S Swain
    posted to theory stochastic_simulations stochasticity noise fluctuations extrinsic by margaritis on 2008-05-07 11:47:21 as ** along with 2 people Ema jjray
  • Transient heterogeneity in extracellular protease production by Bacillus subtilis
    Mol Syst Biol, Vol. 4 (15 April 2008)
    by Jan-Willem Veening, Oleg A Igoshin, Robyn T Eijlander, Reindert Nijland, Leendert W Hamoen, Oscar P Kuipers
    posted to multistability experiment bsubtilis bistability by margaritis on 2008-05-07 11:44:37 as ** along with 2 people brianb balabu
  • Hierarchical structure and the prediction of missing links in networks
    Nature, Vol. 453, No. 7191., pp. 98-101.
    by Aaron Clauset, Cristopher Moore, MEJ Newman
    posted to networks hierarchical complexity by margaritis on 2008-05-06 11:15:32 as ** along with 35 people sen_cheng jjray rds Borelli ptrobajo apwesolowski dpf cmmorel fbaroni balicea cmor kengg pbull jago Ema gtgt15 hryk nedwards i-stevenson pinney elsantosneto markusd eyliu craigwilson06 jyuh gagliol bryanhughes akshat tmmurali cactus AbnerCYH tny briordan deanmalmgren soramame_0518
  • Intrinsic noise, dissipation cost, and robustness of cellular networks: The underlying energy landscape of MAPK signal transduction
    Proceedings of the National Academy of Sciences (17 April 2008), 0708708105.
    by Saul Lapidus, Bo Han, Jin Wang
    posted to stochasticity regulatory_network potential noise by margaritis on 2008-04-25 15:01:52 as ** along with 4 people cactus ddcttrl biehl jjray
  • Incorrect nucleotide insertion at the active site of a G:A mismatch catalyzed by DNA polymerase beta
    Proceedings of the National Academy of Sciences, Vol. 105, No. 15. (15 April 2008), pp. 5670-5674.
    by Ping Lin, Vinod K Batra, Lars C Pedersen, William A Beard, Samuel H Wilson, Lee G Pedersen
    posted to dnap error_rate fidelity by margaritis on 2008-04-16 15:49:44 as **
  • Poised Polymerases: On Your Mark...Get Set...Go!
    Molecular Cell, Vol. 30, No. 1. (11 April 2008), pp. 7-10.
    by David H Price
    posted to elongation regulation review transcription by margaritis on 2008-04-16 15:33:22 as **
  • DNA REPLICATION FIDELITY
    Annual Review of Biochemistry, Vol. 69, No. 1. (2000), pp. 497-529.
    by Thomas A Kunkel, Katarzyna Bebenek
    posted to fidelity proofreading replication by margaritis on 2008-04-14 18:37:53 as **
  • Applied force reveals mechanistic and energetic details of transcription termination.
    Cell, Vol. 132, No. 6. (21 March 2008), pp. 971-982.
    by MH Larson, WJ Greenleaf, R Landick, SM Block
    posted to single-molecule termination transcription by margaritis on 2008-04-14 13:47:45 as **
  • Transcriptional control of noise in gene expression
    Proceedings of the National Academy of Sciences (19 March 2008), 0707904105.
    by Alvaro Sanchez, Jane Kondev
    posted to noise regulation stochasticity theory transcription by margaritis on 2008-04-07 10:58:23 as ** along with 6 people austin sbottani ddcttrl jjray balabu lambda
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