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margaritis's library [184 articles]

最近录入 margaritis's 文献库.
  • Evolvability and hierarchy in rewired bacterial gene networks
    Nature, Vol. 452, No. 7189. (17 April 2008), pp. 840-845.
    by Mark Isalan, Caroline Lemerle, Konstantinos Michalodimitrakis, Carsten Horn, Pedro Beltrao, Emanuele Raineri, Mireia Garriga-Canut, Luis Serrano
    posted to transcription regulation gene-networks gene-expression gene-circuits evolvability by margaritis on 2008-05-09 13:23:46 as ** along with 13 people and 3 groups AbnerCYH hryk cactus dbikard Garamonfok caseybrown biehl aalibes tmmurali dullhunk neils cmzmasek josedavid SynBioSys Centre de Recherches Interdisciplinaires GEB
  • Colored extrinsic fluctuations and stochastic gene expression
    Mol Syst Biol, Vol. 4 (6 May 2008)
    by Vahid Shahrezaei, Julien F Ollivier, Peter S Swain
    posted to theory stochastic_simulations stochasticity noise fluctuations extrinsic by margaritis on 2008-05-07 11:47:21 as ** along with 1 person jjray
  • Transient heterogeneity in extracellular protease production by Bacillus subtilis
    Mol Syst Biol, Vol. 4 (15 April 2008)
    by Jan-Willem Veening, Oleg A Igoshin, Robyn T Eijlander, Reindert Nijland, Leendert W Hamoen, Oscar P Kuipers
    posted to multistability experiment bsubtilis bistability by margaritis on 2008-05-07 11:44:37 as ** along with 2 people brianb balabu
  • Hierarchical structure and the prediction of missing links in networks
    Nature, Vol. 453, No. 7191., pp. 98-101.
    by Aaron Clauset, Cristopher Moore, MEJ Newman
    posted to networks hierarchical complexity by margaritis on 2008-05-06 11:15:32 as ** along with 24 people pbull jago Ema gtgt15 hryk nedwards i-stevenson pinney elsantosneto markusd eyliu craigwilson06 jyuh gagliol bryanhughes akshat tmmurali cactus AbnerCYH tny briordan deanmalmgren soramame_0518 jjray
  • Intrinsic noise, dissipation cost, and robustness of cellular networks: The underlying energy landscape of MAPK signal transduction
    Proceedings of the National Academy of Sciences (17 April 2008), 0708708105.
    by Saul Lapidus, Bo Han, Jin Wang
    posted to stochasticity regulatory_network potential noise by margaritis on 2008-04-25 15:01:52 as ** along with 4 people cactus ddcttrl biehl jjray
  • Incorrect nucleotide insertion at the active site of a G:A mismatch catalyzed by DNA polymerase beta
    Proceedings of the National Academy of Sciences, Vol. 105, No. 15. (15 April 2008), pp. 5670-5674.
    by Ping Lin, Vinod K Batra, Lars C Pedersen, William A Beard, Samuel H Wilson, Lee G Pedersen
    posted to dnap error_rate fidelity by margaritis on 2008-04-16 15:49:44 as **
  • Poised Polymerases: On Your Mark...Get Set...Go!
    Molecular Cell, Vol. 30, No. 1. (11 April 2008), pp. 7-10.
    by David H Price
    posted to elongation regulation review transcription by margaritis on 2008-04-16 15:33:22 as **
  • DNA REPLICATION FIDELITY
    Annual Review of Biochemistry, Vol. 69, No. 1. (2000), pp. 497-529.
    by Thomas A Kunkel, Katarzyna Bebenek
    posted to fidelity proofreading replication by margaritis on 2008-04-14 18:37:53 as **
  • Applied force reveals mechanistic and energetic details of transcription termination.
    Cell, Vol. 132, No. 6. (21 March 2008), pp. 971-982.
    by MH Larson, WJ Greenleaf, R Landick, SM Block
    posted to single-molecule termination transcription by margaritis on 2008-04-14 13:47:45 as **
  • Transcriptional control of noise in gene expression
    Proceedings of the National Academy of Sciences (19 March 2008), 0707904105.
    by Alvaro Sanchez, Jane Kondev
    posted to noise regulation stochasticity theory transcription by margaritis on 2008-04-07 10:58:23 as ** along with 4 people ddcttrl jjray balabu lambda
  • Stochasticity and Cell Fate
    Science, Vol. 320, No. 5872. (4 April 2008), pp. 65-68.
    by Richard Losick, Claude Desplan
    posted to bistability cell_fate review stochasticity by margaritis on 2008-04-07 10:48:31 as ** along with 4 people and 1 group balabu paulschlesinger davidlott josedavid GEB
  • Transcription Regulation Through Promoter-Proximal Pausing of RNA Polymerase II
    Science, Vol. 319, No. 5871. (28 March 2008), pp. 1791-1792.
    by Leighton J Core, John T Lis
    posted to pause pauses regulation transcription by margaritis on 2008-03-28 12:37:15 as ** along with 2 people and 1 group skoch3 biomcgary Koch_Lab
  • Purely stochastic binary decisions in cell signaling models without underlying deterministic bistabilities
    Proceedings of the National Academy of Sciences, Vol. 104, No. 48. (27 November 2007), pp. 18958-18963.
    by Maxim N Artyomov, Jayajit Das, Mehran Kardar, Arup K Chakraborty
    posted to bistability desicion_making noise by margaritis on 2008-03-27 18:28:45 as ** along with 1 person balabu
  • Stochastic switching as a survival strategy in fluctuating environments
    Nat Genet, Vol. 40, No. 4. (April 2008), pp. 471-475.
    by Murat Acar, Jerome T Mettetal, Alexander van Oudenaarden
    posted to bistability noise stochasticity by margaritis on 2008-03-27 17:42:20 as ** along with 10 people and 1 group brianb A_Olympia operon jjray gokhan dbikard bootsy qwermish fjvico osilander GEB
  • Transient-mediated fate determination in a transcriptional circuit of HIV
    Nat Genet, Vol. 40, No. 4. (April 2008), pp. 466-470.
    by Leor S Weinberger, Roy D Dar, Michael L Simpson
    posted to bistability hiv noise by margaritis on 2008-03-27 17:41:48 as ** along with 1 person balabu
  • Stripping Bacillus: ComK auto-stimulation is responsible for the bistable response in competence development
    Molecular Microbiology, Vol. 56, No. 3. (May 2005), pp. 604-614.
    by Wiep K Smits, Caroline C Eschevins, Kim A Susanna, Sierd Bron, Oscar P Kuipers, Leendert W Hamoen
    posted to autoregulation bistability bsubtilis competence by margaritis on 2008-03-25 17:28:50 as **
  • Phenotypic variation in bacteria: the role of feedback regulation
    Nature Reviews Microbiology, Vol. 4, No. 4., pp. 259-271.
    by Wiep K Smits, Oscar P Kuipers, Jan-Willem Veening
    posted to bacteria bistability noise by margaritis on 2008-03-25 17:25:01 as ** along with 4 people and 1 group madhadron nickluscombe comb timflutre EBI-regulation
  • Bistability in the Bacillus subtilis K-state (competence) system requires a positive feedback loop
    Molecular Microbiology, Vol. 56, No. 3. (May 2005), pp. 615-624.
    by Hedia Maamar, David Dubnau
    posted to bistability bsubtilis competence by margaritis on 2008-03-25 17:17:39 as **
  • Bistability and biofilm formation in Bacillus subtilis.
    Mol Microbiol, Vol. 67, No. 2. (20 December 2007), pp. 254-263.
    by Yunrong Chai, Frances Chu, Roberto Kolter, Richard Losick
    posted to biofilm bistability bsubtilis by margaritis on 2008-03-25 16:28:00 as ** along with 1 person madhadron
  • Phosphatases modulate the bistable sporulation gene expression pattern in Bacillus subtilis
    Molecular Microbiology, Vol. 56, No. 6. (June 2005), pp. 1481-1494.
    by Jan-Willem Veening, Leendert W Hamoen, Oscar P Kuipers
    posted to bsubtilis noise sporulation by margaritis on 2008-03-25 16:27:19 as **
  • Bistability in bacteria
    Molecular Microbiology, Vol. 61, No. 3. (August 2006), pp. 564-572.
    by Dubnau, David, Losick, Richard
    posted to bacteria bistability bsubtilis competence by margaritis on 2008-03-25 15:22:50 as *** along with 1 person balabu
  • Basal expression rate of comK sets a switching-window into the K-state of Bacillus subtilis
    Molecular Microbiology, Vol. 63, No. 6. (March 2007), pp. 1806-1816.
    by Leisner, Madeleine, Stingl, Kerstin, Radler, O Joachim, Maier, Berenike
    posted to bsubtilis competence by margaritis on 2008-03-25 14:42:41 as **
  • A chromatin landmark and transcription initiation at most promoters in human cells.
    Cell, Vol. 130, No. 1. (13 July 2007), pp. 77-88.
    by MG Guenther, SS Levine, LA Boyer, R Jaenisch, RA Young
    posted to elongation initiation regulation transcription by margaritis on 2008-03-19 18:20:03 as **
  • Nonequilibrium mechanics of active cytoskeletal networks.
    Science, Vol. 315, No. 5810. (19 January 2007), pp. 370-373.
    by D Mizuno, C Tardin, CF Schmidt, FC Mackintosh
    posted to active networks by margaritis on 2008-03-18 14:08:16 as ** along with 1 person shigepong
  • Interchromosomal Interactions and Olfactory Receptor Choice
    Cell, Vol. 126, No. 2. (28 July 2006), pp. 403-413.
    by Stavros Lomvardas, Gilad Barnea, David J Pisapia, Monica Mendelsohn, Jennifer Kirkland, Richard Axel
    posted to desicion_making olfactory_genes by margaritis on 2008-03-18 12:04:28 as ** along with 1 person maximilianh
  • The nuclear envelope and transcriptional control
    Nature Reviews Genetics, Vol. 8, No. 7. (05 June 2007), pp. 507-517.
    by Asifa Akhtar, Susan M Gasser
    posted to control dna regulation transcription by margaritis on 2008-03-18 11:35:26 as ** along with 2 people and 2 groups dchughes ajgentles G4ID Genetics-of-Gambling
  • Dynamic genome architecture in the nuclear space: regulation of gene expression in three dimensions
    Nat Rev Genet, Vol. 8, No. 2. (February 2007), pp. 104-115.
    by Christian Lanctot, Thierry Cheutin, Marion Cremer, Giacomo Cavalli, Thomas Cremer
    posted to chromosomes dna organisation by margaritis on 2008-03-18 11:33:25 as ** along with 5 people and 3 groups dchughes emilyhare tenpils massivemayhem mdimon EisenLab G4ID Genetics-of-Gambling
  • RNA polymerase is poised for activation across the genome
    Nature Genetics, Vol. 39, No. 12. (11 November 2007), pp. 1507-1511.
    by Ginger W Muse, Daniel A Gilchrist, Sergei Nechaev, Ruchir Shah, Joel S Parker, Sherry F Grissom, Julia Zeitlinger, Karen Adelman
    posted to elongation pauses regulation rnap transcription by margaritis on 2008-03-03 12:30:01 as read along with 3 people and 1 group caseybrown skoch3 rschulz Koch_Lab
  • RNA polymerase stalling at developmental control genes in the Drosophila melanogaster embryo
    Nature Genetics, Vol. 39, No. 12. (11 November 2007), pp. 1512-1516.
    by Julia Zeitlinger, Alexander Stark, Manolis Kellis, Joung-Woo Hong, Sergei Nechaev, Karen Adelman, Michael Levine, Richard A Young
    posted to elongation pauses rnap by margaritis on 2008-03-03 12:28:16 as read along with 3 people caseybrown Stew rschulz
  • Modular cell biology: retroactivity and insulation
    Mol Syst Biol, Vol. 4 (12 February 2008)
    by Domitilla Del Vecchio, Alexander J Ninfa, Eduardo D Sontag
    posted to control_theory gene-expression gene-networks by margaritis on 2008-02-22 11:05:41 as ** along with 3 people austin rsantana pmendes
  • Gene expression dynamics in the macrophage exhibit criticality
    Proceedings of the National Academy of Sciences, Vol. 105, No. 6. (12 February 2008), pp. 1897-1900.
    by Matti Nykter, Nathan D Price, Maximino Aldana, Stephen A Ramsey, Stuart A Kauffman, Leroy E Hood, Olli Yli-Harja, Ilya Shmulevich
    posted to adaptability criticality gene-expression robustness by margaritis on 2008-02-15 09:35:50 as ***
  • Concurrent Fast and Slow Cycling of a Transcriptional Activator at an Endogenous Promoter
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 466-469.
    by Tatiana S Karpova, Min J Kim, Corentin Spriet, Kip Nalley, Timothy J Stasevich, Zoulika Kherrouche, Laurent Heliot, James G Mcnally
    posted to binding dna promoter transcription transcription-factor by margaritis on 2008-01-30 10:55:28 as ***** along with 3 people djkt cjeans caseybrown
  • The Frequency Dependence of Osmo-Adaptation in Saccharomyces cerevisiae
    Science, Vol. 319, No. 5862. (25 January 2008), pp. 482-484.
    by Jerome T Mettetal, Dale Muzzey, Carlos Gomez-Uribe, Alexander van Oudenaarden
    posted to gene-circuits gene-expression gene-networks gene-regulation negative_feedback by margaritis on 2008-01-30 10:54:02 as ***** along with 5 people brianb bayesian cjeans cactus biomcgary
  • Analysis of Promoter Targets for Escherichia coli Transcription Elongation Factor GreA In Vivo and In Vitro
    J. Bacteriol., Vol. 189, No. 24. (15 December 2007), pp. 8772-8785.
    by Ekaterina Stepanova, Jookyung Lee, Maria Ozerova, Ekaterina Semenova, Kirill Datsenko, Barry L Wanner, Konstantin Severinov, Sergei Borukhov
    posted to backtracking grea pauses transcription by margaritis on 2008-01-25 18:40:14 as **** along with 1 person operon
  • Effects of Molecular Memory and Bursting on Fluctuations in Gene Expression
    Science, Vol. 319, No. 5861. (18 January 2008), pp. 339-343.
    by Juan M Pedraza, Johan Paulsson
    posted to bursting fluctuations gene-expression noise stochasticity by margaritis on 2008-01-18 11:07:20 as ***** along with 7 people ddcttrl balicea cjeans heliopais roys sb_journal_club rschulz
  • RNA-mediated epigenetic programming of a genome-rearrangement pathway
    Nature (28 November 2007)
    by Mariusz Nowacki, Vikram Vijayan, Yi Zhou, Klaas Schotanus, Thomas G Doak, Laura F Landweber
    posted to dna epigenetics rearrangement rna by margaritis on 2008-01-10 12:05:21 as ** along with 6 people balicea mtagaya sebastien_vigneau zwang rebeccamancy rschulz
  • Fluctuations, pauses and backtracking in DNA transcription
    Biophys. J. (24 August 2007), biophysj.107.105767.
    by Margaritis Voliotis, Netta Cohen, Carmen Molina-Paris, Tanniemola Liverpool
    posted to backtracking fluctuations noise stochasticity transcription by margaritis on 2008-01-09 11:22:22 as ****
  • Single-molecule tracking of mRNA exiting from RNA polymerase II.
    Proc Natl Acad Sci U S A (28 December 2007)
    by Joanna Andrecka, Robert Lewis, Florian Brückner, Elisabeth Lehmann, Patrick Cramer, Jens Michaelis
    posted to mrnap polymerase rnap transcription by margaritis on 2008-01-09 11:21:50 as **** along with 1 person yusdi
  • Stochastic gene expression out-of-steady-state in the cyanobacterial circadian clock
    Nature, Vol. 450, No. 7173. (20 December 2007), pp. 1249-1252.
    by Jeffrey R Chabot, Juan M Pedraza, Prashant Luitel, Alexander van Oudenaarden
    posted to experiment gene-expression noise stochasticity by margaritis on 2008-01-08 11:50:03 as ** along with 4 people austin balabu cactus kintoki
  • Coupling and coordination in gene expression processes: a systems biology view.
    Nat Rev Genet (11 December 2007)
    by Suzanne Komili, Pamela A A Silver
    posted to eykaryotic gene-expression review by margaritis on 2008-01-08 11:21:48 as ** along with 6 people jyuh tmmurali bootsy cabbagezs Ema renatomilani
  • Merging the RNA and DNA worlds
    Nat Struct Mol Biol, Vol. 14, No. 12. (December 2007), pp. 1122-1123.
    by Irina Artsimovitch, Dmitry G Vassylyev
    posted to pol_ii rnap transcription by margaritis on 2007-12-05 18:08:10 as **
  • Mechanism of transcriptional stalling at cisplatin-damaged DNA
    Nat Struct Mol Biol, Vol. 14, No. 12. (December 2007), pp. 1127-1133.
    by Gerke E Damsma, Aaron Alt, Florian Brueckner, Thomas Carell, Patrick Cramer
    posted to pause rnap stalling transcription by margaritis on 2007-12-05 17:50:07 as **
  • Programming gene expression with combinatorial promoters
    Mol Syst Biol, Vol. 3 (13 November 2007)
    by Robert S Cox, Michael G Surette, Michael B Elowitz
    posted to gene-circuits gene-expression synthetic-biology systems_biology by margaritis on 2007-12-05 10:17:02 as ** along with 13 people and 2 groups Retchless tmmurali austin dpollard balicea kengg dbikard lusk cjeans zwang discreteonyxorb cabbagezs Ema EisenLab SynBioSys
  • Bacterial RNA polymerases: the wholo story.
    Curr Opin Struct Biol, Vol. 13, No. 1. (February 2003), pp. 31-39.
    by KS Murakami, SA Darst
    posted to rnap transcription by margaritis on 2007-12-04 18:15:47 as *** along with 1 person cassj
  • Dynamical quorum sensing: Population density encoded in cellular dynamics
    Proceedings of the National Academy of Sciences, Vol. 104, No. 47. (20 November 2007), pp. 18377-18381.
    by Silvia De Monte, Francesco D'ovidio, Sune Dano, Preben G Sorensen
    posted to fluctuations population_density quorum_sensing by margaritis on 2007-11-21 11:04:41 as *****
  • Molecular level stochastic model for competence cycles in Bacillus subtilis
    Proceedings of the National Academy of Sciences, Vol. 104, No. 45. (6 November 2007), pp. 17582-17587.
    by Daniel Schultz, Ben, Jose N Onuchic, Peter G Wolynes
    posted to bsubtilis competence fluctuations noise stochasticity by margaritis on 2007-11-07 17:44:50 as *** along with 3 people jjray balabu lshaw
  • Dissecting Timing Variability in Yeast Meiosis
    Cell, Vol. 131, No. 3. (2 November 2007), pp. 544-556.
    by Iftach Nachman, Aviv Regev, Sharad Ramanathan
    posted to experiment fluctuations meiosis noise stochasticity yeast by margaritis on 2007-11-07 17:36:48 as ***** along with 2 people and 1 group dpollard balabu EisenLab
  • Living with noisy genes: how cells function reliably with inherent variability in gene expression.
    Annu Rev Biophys Biomol Struct, Vol. 36 (2007), pp. 413-434.
    by N Maheshri, EK O'Shea
    posted to fluctuations noise review stochasticity by margaritis on 2007-11-01 14:16:52 as ** along with 2 people jjray madhadron
  • Back to the future: education for systems-level biologists
    Nature Reviews Molecular Cell Biology, Vol. 7, No. 11. (20 September 2006), pp. 829-832.
    by Ned Wingreen, David Botstein
    posted to systems_biology by margaritis on 2007-10-30 17:25:07 as **
  • Systems biology for beginners
    Nature Methods, Vol. 3, No. 12., pp. 964-965.
    by Daniel Evanko
    posted to systems_biology by margaritis on 2007-10-30 17:22:58 as ** along with 1 person balicea
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