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marck's library [167 articles]

最近录入 marck's 文献库.
  • Organization of Physical Interactomes as Uncovered by Network Schemas
    PLoS Comput Biol, Vol. 4, No. 10. (24 October 2008), e1000203.
    by Eric Banks, Elena Nabieva, Bernard Chazelle, Mona Singh
    posted to protein-interaction-network by marck on 2008-10-28 00:57:09 as ** along with 3 people roys grahamc chad_davis
  • An integrated system for studying residue coevolution in proteins
    Bioinformatics, Vol. 24, No. 2. (15 January 2008), pp. 290-292.
    by Kevin Y Yip, Prianka Patel, Philip M Kim, Donald M Engelman, Drew Mcdermott, Mark Gerstein
    posted to cma by marck on 2008-10-28 00:55:46 as ** along with 4 people and 1 group sobolevnrm chrys friendpine ca3295 baker-group
  • Evolution and Selection in Yeast Promoters: Analyzing the Combined Effect of Diverse Transcription Factor Binding Sites
    PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e7.
    by Daniela Raijman, Ron Shamir, Amos Tanay
    posted to transcription_regulation evolution by marck on 2008-10-28 00:51:51 as ** along with 8 people and 1 group xili03 aalibes sebastien_vigneau lusk Garamonfok nklee maximilianh emptyhb BioinfoCIPF
  • Energy-dependent fitness: A quantitative model for the evolution of yeast transcription factor binding sites
    Proceedings of the National Academy of Sciences, Vol. 105, No. 34. (2008), pp. 12376-12381.
    by Ville Mustonen, Justin Kinney, Curtis G Callan, Michael Lässig
    posted to interaction-specificity by marck on 2008-10-26 12:20:38 as ** along with 4 people emptyhb bmajoros bpcusack zwang
  • The structure of the yeast plasma membrane SNARE complex reveals destabilizing water-filled cavities.
    The Journal of biological chemistry, Vol. 283, No. 2. (11 January 2008), pp. 1113-1119.
    by P Strop, SE Kaiser, M Vrljic, AT Brunger
    posted to snare by marck on 2008-10-25 10:30:26 as **
  • Surface Sites for Engineering Allosteric Control in Proteins
    Science, Vol. 322, No. 5900. (17 October 2008), pp. 438-442.
    by Jeeyeon Lee, Madhusudan Natarajan, Vishal C Nashine, Michael Socolich, Tina Vo, William P Russ, Stephen J Benkovic, Rama Ranganathan
    posted to cma by marck on 2008-10-25 09:15:52 as ** along with 5 people and 3 groups lflorez cactus i000 barry paulschlesinger structural_bioinformatics McCammon Bioinformatics
  • Cytokine-Induced Signaling Networks Prioritize Dynamic Range over Signal Strength
    Cell, Vol. 135, No. 2. (17 October 2008), pp. 343-354.
    by K Janes, H Reinhardt, M Yaffe
    posted to network-analysis by marck on 2008-10-18 05:25:53 as ** along with 4 people rdiaz sg45653 jjray renatomilani
  • Remeasuring the Double Helix
    Science, Vol. 322, No. 5900. (17 October 2008), pp. 446-449.
    by Rebecca S Mathew-Fenn, Rhiju Das, Pehr A Harbury
    posted to transcription_regulation by marck on 2008-10-17 03:33:41 as ** along with 3 people and 1 group melting kshundyak samjlord moernerlab
  • Higher-Order Cellular Information Processing with Synthetic RNA Devices
    Science, Vol. 322, No. 5900. (17 October 2008), pp. 456-460.
    by Maung N Win, Christina D Smolke
    posted to synthetic-biology by marck on 2008-10-17 03:11:13 as ** along with 4 people lflorez grahamc alexknight erel10
  • Phosphorylation Networks Regulating JNK Activity in Diverse Genetic Backgrounds
    Science, Vol. 322, No. 5900. (17 October 2008), pp. 453-456.
    by Chris Bakal, Rune Linding, Flora Llense, Elleard Heffern, Enrique Martin-Blanco, Tony Pawson, Norbert Perrimon
    posted to systems-biology genetic-interaction by marck on 2008-10-17 03:05:32 as ** along with 4 people lptolik renatomilani zwang neils
  • Conservation and Rewiring of Functional Modules Revealed by an Epistasis Map in Fission Yeast
    Science (25 September 2008), 1162609.
    by Assen Roguev, Sourav Bandyopadhyay, Martin Zofall, Ke Zhang, Tamas Fischer, Sean R Collins, Hongjing Qu, Michael Shales, Han-Oh Park, Jacqueline Hayles, Kwang-Lae Hoe, Dong-Uk Kim, Trey Ideker, Shiv I Grewal, Jonathan S Weissman, Nevan J Krogan
    posted to genetic-interaction experiment-large-scale by marck on 2008-10-17 03:01:59 as ** along with 9 people lflorez roys sjung tmmurali zwang caseybrown emptyhb bpcusack brembs
  • GENETICS: It's the Sequence, Stupid!
    Science, Vol. 322, No. 5900. (17 October 2008), pp. 380-381.
    by Hilary A Coller, Leonid Kruglyak
    posted to transcription_regulation by marck on 2008-10-17 02:40:00 as ** along with 8 people and 4 groups Zephyrus cisevol isimpson dlobo bpcusack reyez djkt ptrobajo Roswell Cancer Crosstalk cis-regulatory-evolution BergmanLab GEB
  • BIOCHEMISTRY: Not Comparable, But Complementary
    Science, Vol. 322, No. 5898. (3 October 2008), pp. 56-57.
    by Lars J Jensen, Peer Bork
    posted to network-analysis protein-interaction-network protein-interaction by marck on 2008-10-03 07:50:20 as ***** along with 3 people lfriedl dullhunk larsjuhljensen
  • Phylogenetic profiles reveal evolutionary relationships within the “twilight zone” of sequence similarity
    Proceedings of the National Academy of Sciences, Vol. 105, No. 36. (2008), pp. 13474-13479.
    by Gue S Chang, Yoojin Hong, Kyung D Ko, Gaurav Bhardwaj, Edward C Holmes, Randen L Patterson, Damian B van Rossum
    posted to blast by marck on 2008-09-13 01:17:06 as ** along with 1 person bpcusack
  • Cascading failure and robustness in metabolic networks.
    Proceedings of the National Academy of Sciences of the United States of America (2 September 2008)
    by Ashley G G Smart, Luis A N A Amaral, Julio M M Ottino
    posted to network-analysis by marck on 2008-09-13 01:16:28 as ** along with 1 person yas
  • Built-in loops allow versatility in domain–domain interactions: Lessons from self-interacting domains
    Proceedings of the National Academy of Sciences, Vol. 105, No. 36. (2008), pp. 13292-13297.
    by Eyal Akiva, Zohar Itzhaki, Hanah Margalit
    posted to domain-interaction by marck on 2008-09-13 01:14:54 as ** along with 3 people winterschlaefer icq242500260 zwang
  • Multiple sequence alignment with the Clustal series of programs.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3497-3500.
    by R Chenna, H Sugawara, T Koike, R Lopez, TJ Gibson, DG Higgins, JD Thompson
    posted to msa by marck on 2008-08-30 09:37:29 as ** along with 5 people and 1 group miguel chad_davis beatrizfernandez raylim xingxu Microbial-Ecology
  • Clustal W and Clustal X version 2.0
    Bioinformatics, Vol. 23, No. 21. (1 November 2007), pp. 2947-2948.
    by MA Larkin, G Blackshields, NP Brown, R Chenna, PA Mcgettigan, H Mcwilliam, F Valentin, IM Wallace, A Wilm, R Lopez, JD Thompson, TJ Gibson, DG Higgins
    posted to msa by marck on 2008-08-30 09:37:14 as ** along with 9 people druvus treangen jwm cassj lisa1 ryanraaum bmaust alanrw mschofie
  • What are artificial neural networks?
    Nature Biotechnology, Vol. 26, No. 2., pp. 195-197.
    by Anders Krogh
    posted to kdd ann by marck on 2008-08-16 02:00:47 as ** along with 12 people Yanno jyuh dullhunk zwang cabbagezs asddd sci91078 jfr adacier ale mjoach bertelsen
  • Model-based prediction of sequence alignment quality
    Bioinformatics (4 August 2008), btn414.
    by Virpi Ahola, Tero Aittokallio, Mauno Vihinen, Esa Uusipaikka
    posted to msa by marck on 2008-08-06 07:21:25 as ** along with 1 person nuin
  • Powerful fusion: PSI-BLAST and consensus sequences
    Bioinformatics (4 August 2008), btn384.
    by Dariusz Przybylski, Burkhard Rost
    posted to psi-blast by marck on 2008-08-06 07:16:22 as **
  • VADAR: a web server for quantitative evaluation of protein structure quality
    Nucl. Acids Res., Vol. 31, No. 13. (1 July 2003), pp. 3316-3319.
    by Leigh Willard, Anuj Ranjan, Haiyan Zhang, Hassan Monzavi, Robert F Boyko, Brian D Sykes, David S Wishart
    posted to structure webserver by marck on 2008-08-04 08:35:54 as **
  • Cytoprophet: A Cytoscape plug-in for protein and domain interaction networks inference
    Bioinformatics (24 July 2008), btn380.
    by Faruck Morcos, Charles Lamanna, Marcin Sikora, Jesus Izaguirre
    posted to domain-interaction by marck on 2008-07-30 09:27:31 as ** along with 4 people jyuh grahamc phoenixzxl natstreet
  • Assembly reflects evolution of protein complexes
    Nature (18 June 2008)
    by Emmanuel D Levy, Elisabetta B Erba, Carol V Robinson, Sarah A Teichmann
    posted to complex-assembly evolution protein-interaction-theory by marck on 2008-07-19 06:18:51 as ** along with 8 people chad_davis psique paulschlesinger neils jwm zwang faion phoenixzxl
  • Dichotomies between computational and mathematical models
    Nature Biotechnology, Vol. 26, No. 7., pp. 737-738.
    by Anthony C Hunt, Glen EP Ropella, Sunwoo Park, Jesse Engelberg
    posted to math by marck on 2008-07-19 03:55:40 as **
  • The Origins of Specificity in Polyketide Synthase Protein Interactions
    PLoS Computational Biology, Vol. 3, No. 9. (1 September 2007), e186.
    by Mukund Thattai, Yoram Burak, Boris I Shraiman
    posted to protein-interaction-theory specificity by marck on 2008-07-15 00:59:03 as ** along with 2 people zwang phoenixzxl
  • Design of Multi-Specificity in Protein Interfaces
    PLoS Computational Biology, Vol. 3, No. 8. (1 August 2007), e164.
    by Elisabeth L Humphris, Tanja Kortemme
    posted to interaction-specificity protein-engineering protein-protein-interface by marck on 2008-07-11 04:00:01 as ** along with 7 people and 3 groups msuarezdiez jwm bicko Einat dpollard Scis0000002 phoenixzxl structural_bioinformatics Bioinformatics EisenLab
  • Genetic-linkage mapping of complex hereditary disorders to a whole-genome molecular-interaction network.
    Genome research (16 April 2008)
    by Ivan Iossifov, Tian Zheng, Miron Baron, T Conrad C Gilliam, Andrey Rzhetsky
    posted to genetic-interaction integrated by marck on 2008-07-11 03:59:29 as ** along with 1 person jyuh
  • Evaluating conformational changes in protein structures binding RNA.
    Proteins, Vol. 70, No. 4. (March 2008), pp. 1518-1526.
    by JJ Ellis, S Jones
    posted to rna-protein-interactions by marck on 2008-07-10 05:49:56 as **
  • Bioinformatic method for protein thermal stabilization by structural entropy optimization -- Bae et al., 10.1073/pnas.0800938105 -- Proceedings of the National Academy of Sciences
    posted to protein-engineering structure by marck on 2008-07-09 02:18:30 as **
  • Setting the standard in synthetic biology
    Nat Biotech, Vol. 26, No. 7. (July 2008), pp. 771-774.
    by Adam Arkin
    posted to synthetic-biology by marck on 2008-07-09 02:15:29 as ** along with 5 people Vincent_Rouilly jyuh dbikard grahamc austin
  • Refinement and standardization of synthetic biological parts and devices
    Nat Biotech, Vol. 26, No. 7. (July 2008), pp. 787-793.
    by Barry Canton, Anna Labno, Drew Endy
    posted to synthetic-biology by marck on 2008-07-09 02:15:07 as ** along with 3 people jyuh austin grahamc
  • Extracting Sequence Motifs and the Phylogenetic Features of SNARE-Dependent Membrane Traffic
    Traffic, Vol. 7, No. 8. (August 2006), pp. 1104-1118.
    by Yoshizawa, C Akiyasu, Kawashima, Shuichi, Okuda, Shujiro, Fujita, Masashi, Itoh, Masumi, Moriya, Yuki, Hattori, Masahiro, Kanehisa, Minoru
    posted to coiled-coil snare by marck on 2008-07-07 01:39:59 as **
  • Bimolecular fluorescence complementation (BiFC) analysis of protein interactions in Caenorhabditis elegans.
    Methods (San Diego, Calif.) (26 June 2008)
    by Susan M M Hiatt, Y John J Shyu, Holli M M Duren, Chang-Deng D Hu
    posted to interactions-experiment __bifc by marck on 2008-07-07 01:34:15 as ** along with 2 people and 1 group jyuh tharris C. elegans / WormBase
  • Quantitative Measurements of Protein Interactions in a Crowded Cellular Environment
    Anal. Chem. (3 July 2008)
    by Edwin Li, Jesse Placone, Mikhail Merzlyakov, Kalina Hristova
    posted to interactions-experiment by marck on 2008-07-05 05:45:01 as ** along with 1 person brianb
  • Increasing the reliability of protein interactomes.
    Drug discovery today (30 June 2008)
    by Hon Nian N Chua, Limsoon Wong
    posted to protein-interaction-network by marck on 2008-07-05 02:46:54 as ** along with 2 people jyuh zimbo1
  • Phylogenetic Signal in the Eukaryotic Tree of Life
    Science, Vol. 321, No. 5885. (4 July 2008), pp. 121-123.
    by Michael J Sanderson
    posted to phylogenetic by marck on 2008-07-04 03:52:27 as ** along with 7 people and 3 groups caseybrown dchughes stajich gulsacan jlgreen aprasad djkt Berkeley Mycology Green Lab iSEEM
  • Protein multiple sequence alignment.
    Methods in molecular biology (Clifton, N.J.), Vol. 484 (2008), pp. 379-413.
    by CB Do, K Katoh
    posted to msa by marck on 2008-07-03 10:58:56 as **
  • Ykt6p Is a Multifunctional Yeast R-SNARE That Is Required for Multiple Membrane Transport Pathways to the Vacuole
    Mol. Biol. Cell, Vol. 14, No. 5. (1 May 2003), pp. 1868-1881.
    by Youngseok Kweon, Anca Rothe, Elizabeth Conibear, Tom H Stevens
    posted to snare by marck on 2008-07-02 06:10:13 as **
  • Functions of SNAREs in intracellular membrane fusion and lipid bilayer mixing
    J Cell Sci, Vol. 118, No. 17. (1 September 2005), pp. 3819-3828.
    by Christian Ungermann, Dieter Langosch
    posted to snare by marck on 2008-07-02 06:09:44 as **
  • Yeast Golgi SNARE interactions are promiscuous
    J Cell Sci, Vol. 113, No. 1. (1 January 2000), pp. 145-152.
    by MM Tsui, DK Banfield
    posted to snare specificity by marck on 2008-07-02 06:09:21 as **
  • i-SNAREs: inhibitory SNAREs that fine-tune the specificity of membrane fusion
    J. Cell Biol., Vol. 164, No. 1. (5 January 2004), pp. 79-88.
    by Oleg Varlamov, Allen Volchuk, Vahid Rahimian, Claudia A Doege, Fabienne Paumet, William S Eng, Nancy Arango, Francesco Parlati, Mariella Ravazzola, Lelio Orci, Thomas H Sollner, James E Rothman
    posted to snare by marck on 2008-07-02 06:06:14 as **
  • What is the role of SNARE proteins in membrane fusion?
    Am J Physiol Cell Physiol, Vol. 285, No. 2. (1 August 2003), pp. C237-249.
    by Joseph G Duman, John G Forte
    posted to snare by marck on 2008-07-02 06:05:43 as **
  • SNARE Interactions Are Not Selective. IMPLICATIONS FOR MEMBRANE FUSION SPECIFICITY
    J. Biol. Chem., Vol. 274, No. 9. (26 February 1999), pp. 5649-5653.
    by Bin Yang, Lino Gonzalez, Rytis Prekeris, Martin Steegmaier, Raj J Advani, Richard H Scheller
    posted to snare specificity by marck on 2008-07-02 05:42:19 as **
  • Mixed and Non-cognate SNARE Complexes. CHARACTERIZATION OF ASSEMBLY AND BIOPHYSICAL PROPERTIES
    J. Biol. Chem., Vol. 274, No. 22. (28 May 1999), pp. 15440-15446.
    by Dirk Fasshauer, Wolfram Antonin, Martin Margittai, Stefan Pabst, Reinhard Jahn
    posted to snare specificity by marck on 2008-07-02 05:39:14 as **
  • Human disease: Joining the dots from SNPs to proteins
    Nat Rev Genet, Vol. 9, No. 7. (July 2008), pp. 496-496.
    by Louisa Flintoft
    posted to snp by marck on 2008-07-02 03:43:21 as ** along with 1 person cabbagesofdoom
  • Co-Evolving Motions at Protein−Protein Interfaces of Two-Component Signaling Systems Identified by Covariance Analysis
    Biochemistry (28 June 2008)
    by Hendrik Szurmant, Benjamin G Bobay, Robert A White, Daniel M Sullivan, Richele J Thompson, Terence Hwa, James A Hoch, John Cavanagh
    posted to cma by marck on 2008-07-02 03:42:48 as ** along with 4 people raik neils paulschlesinger pansapiens
  • Global investigation of protein-protein interactions in yeast Saccharomyces cerevisiae using re-occurring short polypeptide sequences.
    Nucleic acids research (27 June 2008)
    by S Pitre, C North, M Alamgir, M Jessulat, A Chan, X Luo, J R R Green, M Dumontier, F Dehne, A Golshani
    posted to ppi-prediction by marck on 2008-07-02 03:41:15 as **
  • Identifying functional modules in protein-protein interaction networks: an integrated exact approach.
    Bioinformatics (Oxford, England), Vol. 24, No. 13. (1 July 2008)
    by MT Dittrich, GW Klau, A Rosenwald, T Dandekar, T Müller
    posted to network-analysis by marck on 2008-07-02 03:39:54 as ** along with 2 people bootsy jyuh
  • Selectional and Mutational Scope of Peptides Sequestering the Jun-Fos Coiled-Coil Domain.
    Journal of molecular biology (17 May 2008)
    by Urs B B Hagemann, Jody M M Mason, Kristian M M Müller, Katja M M Arndt
    posted to bzip coiled-coil by marck on 2008-07-02 03:38:03 as ** along with 2 people kgutwin kevinchannon
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