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marcius's Sali [22 articles]

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  • Structural Modeling of Protein Interactions by Analogy: Application to PSD-95
    PLoS Computational Biology, Vol. preprint, No. 2006. (1 October 2006)
    by Dmitry Korkin, Fred P Davis, Frank Alber, Tinh Luong, Min-Yi Shen, Vladan Lucic, Mary B Kennedy, Andrej Sali
    posted to algorithms comparative_docking comparative_modeling protein_domains protein_interactions by marcius on 2006-10-22 12:12:40 as ** along with 1 person and 2 groups bicko BioinfoCIPF SGU-CIPF
  • Localization of protein-binding sites within families of proteins.
    Protein Sci, Vol. 14, No. 9. (September 2005), pp. 2350-2360.
    by D Korkin, FP Davis, A Sali
    posted to bioinformatics comparative_docking protein_interactions by marcius on 2006-10-22 12:11:09 as ** along with 4 people and 4 groups barry tjimenez bicko wilbur structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Derivation of rules for comparative protein modeling from a database of protein structure alignments.
    Protein Sci, Vol. 3, No. 9. (September 1994), pp. 1582-1596.
    by A Sali, JP Overington
    posted to bioinformatics biophysics comparative_modeling structure_prediction by marcius on 2006-04-08 07:26:12 as ** along with 2 people and 4 groups ana bicko structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • A structural perspective on protein-protein interactions.
    Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 313-324.
    by RB Russell, F Alber, P Aloy, FP Davis, D Korkin, M Pichaud, M Topf, A Sali
    posted to protein_interactions review by marcius on 2005-10-22 02:57:26 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • Comparative protein modelling by satisfaction of spatial restraints.
    J Mol Biol, Vol. 234, No. 3. (December 1993), pp. 779-815.
    by A Sali, TL Blundell
    posted to comparative_modeling by marcius on 2005-10-22 02:57:26 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • PIBASE: a comprehensive database of structurally defined protein interfaces.
    Bioinformatics, Vol. 21, No. 9. (May 2005), pp. 1901-1907.
    by FP Davis, A Sali
    posted to databases protein_interactions by marcius on 2005-10-22 02:57:26 as ** along with 2 groups BioinfoCIPF SGU-CIPF
  • The C-type lectin fold as an evolutionary solution for massive sequence variation
    Nature Structural & Molecular Biology, Vol. 12, No. 10. (18 September 2005), pp. 886-892.
    by Stephen A Mcmahon, Jason L Miller, Jeffrey A Lawton, Donald E Kerkow, Asher Hodes, Marc A Marti-Renom, Sergei Doulatov, Eswar Narayanan, Andrej Sali, Jeff F Miller, Partho Ghosh
    posted to computational_biology evolution immunology protein_function protein_structure by marcius on 2005-10-21 09:26:57 as read along with 2 people and 4 groups stevanspringer ana structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Urokinase-type plasminogen activator is a preferred substrate of the human epithelium serine protease tryptase epsilon/PRSS22.
    Blood, Vol. 105, No. 10. (15 May 2005), pp. 3893-3901.
    by S Yasuda, N Morokawa, GW Wong, A Rossi, MS Madhusudhan, A Sali, YS Askew, R Adachi, GA Silverman, SA Krilis, RL Stevens
    posted to biology proteases protein_structure by marcius on 2005-10-20 23:16:59 as * along with 2 groups BioinfoCIPF SGU-CIPF
  • Comparative protein structure modeling of genes and genomes.
    Annu Rev Biophys Biomol Struct, Vol. 29 (2000), pp. 291-325.
    by MA Marti-Renom, AC Stuart, A Fiser, R Sánchez, F Melo, A Sali
    posted to bioinformatics protein_folding protein_structure review by marcius on 2005-10-20 21:46:52 as read along with 12 people and 2 groups aalibes nigham chad_davis ttjoseph ffranca duartemolha dgront ruvido insectopalo min013 IrinaMoreira granujilla BioinfoCIPF SGU-CIPF
  • Vanilloid receptor-related osmotically activated channel (VR-OAC), a candidate vertebrate osmoreceptor.
    Cell, Vol. 103, No. 3. (27 October 2000), pp. 525-535.
    by W Liedtke, Y Choe, MA Marti-Renom, AM Bell, CS Denis, A Sali, AJ Hudspeth, JM Friedman, S Heller
    posted to biology genes mechano_receptors by marcius on 2005-10-20 21:46:29 as read along with 2 groups BioinfoCIPF SGU-CIPF
  • Protein structure modeling for structural genomics.
    Nat Struct Biol, Vol. 7 Suppl (November 2000), pp. 986-990.
    by R Sánchez, U Pieper, F Melo, N Eswar, MA Marti-Renom, MS Madhusudhan, N Mirkovic, A Sali
    posted to evolution protein_folding protein_structure review structural_genomics by marcius on 2005-10-20 21:45:38 as read along with 2 people and 2 groups penka dgront BioinfoCIPF SGU-CIPF
  • DBAli: a database of protein structure alignments.
    Bioinformatics, Vol. 17, No. 8. (August 2001), pp. 746-747.
    by MA Marti-Renom, VA Ilyin, A Sali
    posted to bioinformatics databases protein_structure software by marcius on 2005-10-20 21:42:59 as read along with 1 person and 2 groups chad_davis BioinfoCIPF SGU-CIPF
  • EVA: continuous automatic evaluation of protein structure prediction servers.
    Bioinformatics, Vol. 17, No. 12. (December 2001), pp. 1242-1243.
    by VA Eyrich, MA Marti-Renom, D Przybylski, MS Madhusudhan, A Fiser, F Pazos, A Valencia, A Sali, B Rost
    posted to bioinformatics databases by marcius on 2005-10-20 21:35:29 as read along with 2 groups BioinfoCIPF SGU-CIPF
  • Reliability of assessment of protein structure prediction methods.
    Structure (Camb), Vol. 10, No. 3. (March 2002), pp. 435-440.
    by MA Marti-Renom, MS Madhusudhan, A Fiser, B Rost, A Sali
    posted to cafasp casp by marcius on 2005-10-20 21:34:30 as read along with 1 person and 2 groups dgront BioinfoCIPF SGU-CIPF
  • Use of single point mutations in domain I of beta 2-glycoprotein I to determine fine antigenic specificity of antiphospholipid autoantibodies.
    J Immunol, Vol. 169, No. 12. (15 December 2002), pp. 7097-7103.
    by GM Iverson, S Reddel, EJ Victoria, KA Cockerill, YX Wang, MA Marti-Renom, A Sali, DM Marquis, SA Krilis, MD Linnik
    posted to immunology protein_structure by marcius on 2005-10-20 21:33:55 as read along with 2 groups BioinfoCIPF SGU-CIPF
  • ModView, visualization of multiple protein sequences and structures.
    Bioinformatics, Vol. 19, No. 1. (January 2003), pp. 165-166.
    by VA Ilyin, U Pieper, AC Stuart, MA Marti-Renom, L McMahan, A Sali
    posted to bioinformatics software by marcius on 2005-10-20 21:33:25 as read along with 2 groups BioinfoCIPF SGU-CIPF
  • EVA: Evaluation of protein structure prediction servers.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3311-3315.
    by IY Koh, VA Eyrich, MA Marti-Renom, D Przybylski, MS Madhusudhan, N Eswar, O Graña, F Pazos, A Valencia, A Sali, B Rost
    posted to bioinformatics databases protein_structure by marcius on 2005-10-20 21:33:04 as read along with 2 people and 2 groups penka dgront BioinfoCIPF SGU-CIPF
  • Tools for comparative protein structure modeling and analysis.
    Nucleic Acids Res, Vol. 31, No. 13. (1 July 2003), pp. 3375-3380.
    by N Eswar, B John, N Mirkovic, A Fiser, VA Ilyin, U Pieper, AC Stuart, MA Marti-Renom, MS Madhusudhan, B Yerkovich, A Sali
    posted to software bioinformatics protein_structure by marcius on 2005-10-20 21:32:41 as read along with 2 people and 2 groups vavi chad_davis BioinfoCIPF SGU-CIPF
  • MODBASE, a database of annotated comparative protein structure models, and associated resources.
    Nucleic Acids Res, Vol. 32, No. Database issue. (1 January 2004)
    by U Pieper, N Eswar, H Braberg, MS Madhusudhan, FP Davis, AC Stuart, N Mirkovic, A Rossi, MA Marti-Renom, A Fiser, B Webb, D Greenblatt, CC Huang, TE Ferrin, A Sali
    posted to bioinformatics databases protein_structure by marcius on 2005-10-20 21:29:36 as read along with 2 people and 2 groups dgront blackbart BioinfoCIPF SGU-CIPF
  • Alignment of protein sequences by their profiles.
    Protein Sci, Vol. 13, No. 4. (April 2004), pp. 1071-1087.
    by MA Marti-Renom, MS Madhusudhan, A Sali
    posted to bioinformatics evolution by marcius on 2005-10-20 21:26:12 as read along with 4 people and 2 groups pjcite j3xucite zmasek granujilla BioinfoCIPF SGU-CIPF
  • Structure-based assessment of missense mutations in human BRCA1: implications for breast and ovarian cancer predisposition.
    Cancer Res, Vol. 64, No. 11. (1 June 2004), pp. 3790-3797.
    by N Mirkovic, MA Marti-Renom, BL Weber, A Sali, AN Monteiro
    posted to bioinformatics biology evolution genes by marcius on 2005-10-20 21:25:22 as read along with 2 groups BioinfoCIPF SGU-CIPF
  • Detecting remotely related proteins by their interactions and sequence similarity.
    Proc Natl Acad Sci U S A, Vol. 102, No. 20. (17 May 2005), pp. 7151-7156.
    by J Espadaler, R Aragüés, N Eswar, MA Marti-Renom, E Querol, FX Aviles, A Sali, B Oliva
    posted to bioinformatics by marcius on 2005-10-20 20:09:43 as read along with 1 person and 2 groups baldo BioinfoCIPF SGU-CIPF
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