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macavity1g's library [61 articles]

最近录入 macavity1g's 文献库.
  • Group testing for pathway analysis improves comparability of different microarray data sets.
    Bioinformatics (7 August 2006)
    by Theodora Manoli, Norbert Gretz, Hermann-Josef J Gröne, Marc Kenzelmann, Roland Eils, Benedikt Brors
    posted to microarray by macavity1g on 2008-02-19 03:32:01 as *** along with 4 people and 1 group jfr ealloza jdiggans ptrobajo BioinfoCIPF
  • Module-based outcome prediction using breast cancer compendia.
    PLoS ONE, Vol. 2, No. 10. (2007)
    by MH van Vliet, CN Klijn, LF Wessels, MJ Reinders
    posted to no-tag by macavity1g on 2008-01-14 03:44:18 as *** along with 2 people jfr ptrobajo
  • GOSim - An R-package for computation of information theoretic GO similarities between terms and gene products
    BMC Bioinformatics, Vol. 8 (22 May 2007), 166.
    by Holger Froehlich, Nora Speer, Annemarie Poustka, Tim Beissbarth
    posted to go microarray by macavity1g on 2007-05-29 03:52:29 as *** along with 4 people jyuh jfr sgoetz RamuAnandakrishnan
  • Coexpression analysis of human genes across many microarray data sets.
    Genome Res, Vol. 14, No. 6. (June 2004), pp. 1085-1094.
    by HK Lee, AK Hsu, J Sajdak, J Qin, P Pavlidis
    posted to go microarray by macavity1g on 2007-04-30 19:24:25 as *** along with 11 people and 2 groups nedwards jo_davies maryee gpalidwor giovanni jeremymiller hawkeyehammer grahamc raylim sgoetz wilbur GeschwindLab Indigene
  • An information-theoretic definition of similarity
    (1998), pp. 296-304.
    by Dekang Lin
    posted to no-tag by macavity1g on 2007-04-30 19:20:54 as *** along with 22 people and 16 groups CitoJam camster dbk sourada korakot LeightonP frednicolier parmentierf JacquesC mortimer mote lwilliams jelsas jtextori barry ingo gangli garyfeng okarsligil onlyme gaudan Tronhus streptomyces NU-PRL Philosophy_of_Information UoY-CS-AIG dbk-lab Blog_and_Wiki_Research structural_bioinformatics tulip ReadingLab ASR ISI NLP SLA Bioinformatics LanguageAndBrain AI
  • Semantic Similarity Based on Corpus Statistics and Lexical Taxonomy
    by Jay J Jiang, David W Conrath
    posted to no-tag by macavity1g on 2007-04-30 19:18:46 as *** along with 1 person styliani
  • Correlation between gene expression and GO semantic similarity.
    IEEE/ACM Trans Comput Biol Bioinform, Vol. 2, No. 4. (c 2005), pp. 330-338.
    by JL Sevilla, V Segura, A Podhorski, E Guruceaga, JM Mato, LA Martínez-Cruz, FJ Corrales, A Rubio
    posted to go by macavity1g on 2007-04-30 19:15:30 as ***
  • A new measure for functional similarity of gene products based on Gene Ontology
    BMC Bioinformatics, Vol. 7 (15 June 2006), 302.
    by Andreas Schlicker, Francisco S Domingues, Jorg Rahnenfuhrer, Thomas Lengauer
    posted to go by macavity1g on 2007-04-30 19:10:22 as *** along with 5 people and 1 group bsamal yas CitoJam gaudan iris_2001 T_lab
  • Ontological analysis of gene expression data: current tools, limitations, and open problems.
    Bioinformatics, Vol. 21, No. 18. (15 September 2005), pp. 3587-3595.
    by P Khatri, S Drăghici
    posted to go by macavity1g on 2007-04-30 19:09:22 as *** along with 7 people Cortel dragonrez Garamonfok sgoetz heliopais kristen yggdrasil
  • GO::TermFinder-open source software for accessing Gene Ontology information and finding significantly enriched Gene Ontology terms associated with a list of genes
    Bioinformatics, Vol. 20, No. 18., 3710.
    by Elizabeth I Boyle, Shuai Weng, Jeremy Gollub, Heng Jin, David Botstein, Michael M Cherry, Gavin Sherlock
    posted to go by macavity1g on 2007-04-30 19:07:21 as *** along with 2 people cjeans kintoki
  • Using GOstats to test gene lists for GO term association
    Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 257-258.
    by Falcon, , Gentleman,
    posted to go by macavity1g on 2007-04-30 19:06:12 as *** along with 2 people jyuh mcgannd
  • GO PaD: the Gene Ontology Partition Database.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by G Alterovitz, M Xiang, M Mohan, MF Ramoni
    posted to go by macavity1g on 2007-04-30 19:02:10 as *** along with 1 person jfr
  • A robust hybrid between genetic algorithm and support vector machine for extracting an optimal feature gene subset.
    Genomics, Vol. 85, No. 1. (January 2005), pp. 16-23.
    by L Li, W Jiang, X Li, KL Moser, Z Guo, L Du, Q Wang, EJ Topol, Q Wang, S Rao
    posted to geneticalgorithm microarray by macavity1g on 2007-03-14 22:08:37 as ***
  • Finding the Optimal Gene Order in Displaying Microarray Data
    by Seung K Lee, Yong H Kim, Byung R Moon
    posted to geneticalgorithm microarray by macavity1g on 2007-03-14 22:01:43 as ***
  • A parallel genetic algorithm for single class pattern classification and its application for gene expression profiling in Streptomyces coelicolor.
    BMC Genomics, Vol. 8 (13 February 2007), 49.
    by Cuong C To, Jiri Vohradsky
    posted to geneticalgorithm microarray by macavity1g on 2007-03-14 21:57:30 as **** along with 2 people sdvillal atbrew
  • Towards precise classification of cancers based on robust gene functional expression profiles
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Zheng Guo, Tianwen Zhang, Xia Li, Qi Wang, Jianzhen Xu, Hui Yu, Jing Zhu, Haiyun Wang, Chenguang Wang, Eric Topol, Qing Wang, Shaoqi Rao
    posted to go microarray by macavity1g on 2007-03-12 01:54:14 as **** along with 3 people jfr maryee eckart_bindewald
  • Using the principle of entropy maximization to infer genetic interaction networks from gene expression patterns.
    Proc Natl Acad Sci U S A (30 November 2006)
    by Timothy R R Lezon, Jayanth R R Banavar, Marek Cieplak, Amos Maritan, Nina V V Fedoroff
    posted to entropy microarray by macavity1g on 2007-03-12 01:50:53 as **** along with 4 people jfr aswin hmk iris_2001
  • Inference of disease-related molecular logic from systems-based microarray analysis.
    PLoS Comput Biol, Vol. 2, No. 6. (16 June 2006)
    by V Varadan, D Anastassiou
    posted to entropy microarray by macavity1g on 2007-03-12 01:50:30 as **** along with 4 people jfr wnpx Ao_Li2007 hani_goodarzi
  • An entropy-based gene selection method for cancer classification using microarray data.
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by X Liu, A Krishnan, A Mondry
    posted to entropy microarray by macavity1g on 2007-03-12 01:49:31 as **** along with 1 person jfr
  • The `subsequent artificial neural network' (SANN) approach might bring more classificatory power to ANN-based DNA microarray analyses
    Bioinformatics, Vol. 20, No. 18., 3544.
    by Roland Linder, Dawn Dew, Holger Sudhoff, Dirk Theegarten, Klaus Remberger, Siegfried J Poppl, Mathias Wagner
    posted to microarray neuralnetwork by macavity1g on 2007-03-12 01:48:09 as ***
  • Neural network analysis of lymphoma microarray data: prognosis and diagnosis near-perfect.
    BMC Bioinformatics, Vol. 4, No. 1. (10 April 2003)
    by MC O'Neill, L Song
    posted to microarray neuralnetwork by macavity1g on 2007-03-12 01:47:36 as *** along with 1 person and 1 group waltsb PBRC_HGL
  • Molecular classification of human cancers using a 92-gene real-time quantitative polymerase chain reaction assay.
    Arch Pathol Lab Med, Vol. 130, No. 4. (April 2006), pp. 465-473.
    by XJ Ma, R Patel, X Wang, R Salunga, J Murage, R Desai, JT Tuggle, W Wang, S Chu, K Stecker, R Raja, H Robin, M Moore, D Baunoch, D Sgroi, M Erlander
    posted to geneticalgorithm microarray by macavity1g on 2007-03-12 01:46:52 as **** along with 1 person jfr
  • A systems approach to clinical oncology: Focus on breast cancer
    Proteome Science, Vol. 4, No. 1. (04 April 2006), 5.
    by Mark Abramovitz, Brian Leyland-Jones
    posted to breastcancer microarray by macavity1g on 2007-03-12 01:44:18 as ** along with 3 people and 3 groups karthikram mikeduncan dejori Neoscientists ic4 generif_paper
  • Integrated breast cancer genomics.
    Cancer Cell, Vol. 10, No. 6. (December 2006), pp. 453-454.
    by H Edgren, O Kallioniemi
    posted to breastcancer microarray by macavity1g on 2007-03-12 01:43:37 as ** along with 1 person Terkko
  • Gene expression profiling for prognosis using Cox regression.
    Stat Med, Vol. 23, No. 11. (15 June 2004), pp. 1767-1780.
    by Y Pawitan, J Bjöhle, S Wedren, K Humphreys, L Skoog, F Huang, L Amler, P Shaw, P Hall, J Bergh
    posted to breastcancer cox microarray regression by macavity1g on 2007-03-12 01:43:12 as ** along with 1 person rdiaz
  • Predicting the clinical status of human breast cancer by using gene expression profiles
    PNAS, Vol. 98, No. 20. (25 September 2001), pp. 11462-11467.
    by Mike West, Carrie Blanchette, Holly Dressman, Erich Huang, Seiichi Ishida, Rainer Spang, Harry Zuzan, John A Olson, Jeffrey R Marks, Joseph R Nevins
    posted to breastcancer microarray by macavity1g on 2007-03-12 01:42:43 as read along with 3 people jfr bedo jo_davies
  • Integration of HapMap-based SNP pattern analysis and gene expression profiling reveals common SNP profiles for cancer therapy outcome predictor genes.
    Cell Cycle, Vol. 5, No. 22. (November 2006), pp. 2613-2625.
    by GV Glinsky
    posted to breastcancer microarray snp by macavity1g on 2007-03-12 01:42:00 as *** along with 2 people jyuh jfr
  • How to best classify breast cancer: conventional and novel classifications (review).
    Int J Oncol, Vol. 27, No. 5. (November 2005), pp. 1307-1313.
    by E Charafe-Jauffret, C Ginestier, F Monville, S Fekairi, J Jacquemier, D Birnbaum, F Bertucci
    posted to breastcancer microarray by macavity1g on 2007-03-12 01:41:07 as ** along with 1 person jfr
  • Analysis of recursive gene selection approaches from microarray data.
    Bioinformatics, Vol. 21, No. 19. (1 October 2005), pp. 3741-3747.
    by F Li, Y Yang
    posted to breastcancer microarray svm by macavity1g on 2007-03-12 01:40:31 as *** along with 1 person Ayest
  • Are data from different gene expression microarray platforms comparable?
    Genomics, Vol. 83, No. 6. (June 2004), pp. 1164-1168.
    by AK Järvinen, S Hautaniemi, H Edgren, P Auvinen, J Saarela, OP Kallioniemi, O Monni
    posted to breastcancer microarray by macavity1g on 2007-03-12 01:39:00 as ** along with 1 person yoh
  • A gene-expression signature as a predictor of survival in breast cancer.
    N Engl J Med, Vol. 347, No. 25. (19 December 2002), pp. 1999-2009.
    by MJ van de Vijver, YD He, LJ van't Veer, H Dai, AA Hart, DW Voskuil, GJ Schreiber, JL Peterse, C Roberts, MJ Marton, M Parrish, D Atsma, A Witteveen, A Glas, L Delahaye, T van der Velde, H Bartelink, S Rodenhuis, ET Rutgers, SH Friend, R Bernards
    posted to breastcancer microarray by macavity1g on 2007-03-12 01:38:21 as ** along with 7 people and 1 group jfr tuck adelgiglio giovanni frohike Ao_Li2007 lyndon GeschwindLab
  • Identifying gene expression changes in breast cancer that distinguish early and late relapse among uncured patients.
    Bioinformatics, Vol. 22, No. 12. (15 June 2006), pp. 1477-1485.
    by P Broët, VA Kuznetsov, J Bergh, ET Liu, LD Miller
    posted to breastcancer microarray by macavity1g on 2007-03-12 01:37:48 as *** along with 1 person jfr
  • PACK: Profile Analysis using Clustering and Kurtosis to find molecular classifiers in cancer.
    Bioinformatics, Vol. 22, No. 18. (15 September 2006), pp. 2269-2275.
    by AE Teschendorff, A Naderi, NL Barbosa-Morais, C Caldas
    posted to breastcancer clustering kurtosis microarray by macavity1g on 2007-03-12 01:37:22 as **** along with 1 person jfr
  • A mouse stromal response to tumor invasion predicts prostate and breast cancer patient survival.
    PLoS ONE, Vol. 1 (2006)
    by M Bacac, P Provero, N Mayran, JC Stehle, C Fusco, I Stamenkovic
    posted to breastcancer microarray by macavity1g on 2007-03-12 01:36:37 as ** along with 2 people jfr Ao_Li2007
  • Computational exploration of the activated pathways associated with DNA damage response in breast cancer.
    Proteins, Vol. 65, No. 1. (1 October 2006), pp. 103-110.
    by L Wen, W Li, M Sobel, JA Feng
    posted to breastcancer microarray by macavity1g on 2007-03-12 01:35:40 as ** along with 1 person jfr
  • The molecular portraits of breast tumors are conserved across microarray platforms.
    BMC Genomics, Vol. 7 (2006)
    by Z Hu, C Fan, DS Oh, JS Marron, X He, BF Qaqish, C Livasy, LA Carey, E Reynolds, L Dressler, A Nobel, J Parker, MG Ewend, LR Sawyer, J Wu, Y Liu, R Nanda, M Tretiakova, A Ruiz Orrico, D Dreher, JP Palazzo, L Perreard, E Nelson, M Mone, H Hansen, M Mullins, JF Quackenbush, MJ Ellis, OI Olopade, PS Bernard, CM Perou
    posted to breastcancer microarray by macavity1g on 2007-03-12 01:34:04 as *** along with 1 person jfr
  • Cancer classification and prediction using logistic regression with Bayesian gene selection.
    J Biomed Inform, Vol. 37, No. 4. (August 2004), pp. 249-259.
    by X Zhou, KY Liu, ST Wong
    posted to breastcancer logisticregression microarray by macavity1g on 2007-03-12 01:33:37 as ** along with 1 person rdiaz
  • Prognostic meta-signature of breast cancer developed by two-stage mixture modeling of microarray data.
    BMC Genomics, Vol. 5, No. 1. (2004)
    by R Shen, D Ghosh, AM Chinnaiyan
    posted to breastcancer microarray by macavity1g on 2007-03-12 01:32:46 as ** along with 1 person Ao_Li2007
  • Predicting the prognosis of breast cancer by integrating clinical and microarray data with Bayesian networks.
    Bioinformatics, Vol. 22, No. 14. (15 July 2006)
    by O Gevaert, FD Smet, D Timmerman, Y Moreau, BD Moor
    posted to bayesian breastcancer microarray network by macavity1g on 2007-03-12 01:32:11 as ** along with 4 people jfr wnpx frohike welchr
  • Gene expression patterns of breast carcinomas distinguish tumor subclasses with clinical implications
    PNAS, Vol. 98, No. 19. (11 September 2001), pp. 10869-10874.
    by Therese Sorlie, Charles M Perou, Robert Tibshirani, Turid Aas, Stephanie Geisler, Hilde Johnsen, Trevor Hastie, Michael B Eisen, Matt van de Rijn, Stefanie S Jeffrey, Thor Thorsen, Hanne Quist, John C Matese, Patrick O Brown, David Botstein, Per E Lonning, Anne-Lise Borresen-Dale
    posted to breastcancer microarray by macavity1g on 2007-03-12 01:31:31 as ** along with 2 people jfr frohike
  • Nonparametric pathway-based regression models for analysis of genomic data.
    Biostatistics (13 June 2006)
    by Zhi Wei, Hongzhe Li
    posted to breastcancer microarray regression by macavity1g on 2007-03-12 01:31:11 as ** along with 3 people jfr waghsk ptrobajo
  • Gene expression profiling predicts clinical outcome of breast cancer.
    Nature, Vol. 415, No. 6871. (31 January 2002), pp. 530-536.
    by LJ van 't Veer, H Dai, MJ van de Vijver, YD He, AA Hart, M Mao, HL Peterse, K van der Kooy, MJ Marton, AT Witteveen, GJ Schreiber, RM Kerkhoven, C Roberts, PS Linsley, R Bernards, SH Friend
    posted to breastcancer microarray by macavity1g on 2007-03-12 01:30:04 as read along with 12 people and 1 group jo_davies nedwards jfr tuck bedo giovanni frohike Ao_Li2007 lyndon winterschlaefer Lara waghsk GeschwindLab
  • Singular value decomposition regression models for classification of tumors from microarray experiments.
    Pac Symp Biocomput (2002), pp. 18-29.
    by D Ghosh
    posted to breastcancer microarray by macavity1g on 2007-03-12 01:29:27 as **
  • Gene expression profiling identifies molecular subtypes of inflammatory breast cancer.
    Cancer Res, Vol. 65, No. 6. (15 March 2005), pp. 2170-2178.
    by F Bertucci, P Finetti, J Rougemont, E Charafe-Jauffret, N Cervera, C Tarpin, C Nguyen, L Xerri, R Houlgatte, J Jacquemier, P Viens, D Birnbaum
    posted to breastcancer microarray by macavity1g on 2007-03-12 01:29:07 as ** along with 1 person jfr
  • Gene signature evaluation as a prognostic tool: challenges in the design of the MINDACT trial.
    Nat Clin Pract Oncol, Vol. 3, No. 10. (October 2006), pp. 540-551.
    by J Bogaerts, F Cardoso, M Buyse, S Braga, S Loi, JA Harrison, J Bines, S Mook, N Decker, P Ravdin, P Therasse, E Rutgers, LJ van 't Veer, M Piccart,
    posted to breastcancer microarray by macavity1g on 2007-03-12 01:28:46 as ** along with 2 people Ao_Li2007 lyndon
  • Large scale data mining approach for gene-specific standardization of microarray gene expression data.
    Bioinformatics, Vol. 22, No. 23. (1 December 2006), pp. 2898-2904.
    by S Yoon, Y Yang, J Choi, J Seong
    posted to breastcancer microarray by macavity1g on 2007-03-12 01:28:09 as *** along with 3 people jyuh jfr shigepong
  • Molecular classification and molecular forecasting of breast cancer: ready for clinical application?
    J Clin Oncol, Vol. 23, No. 29. (10 October 2005), pp. 7350-7360.
    by JD Brenton, LA Carey, AA Ahmed, C Caldas
    posted to breastcancer microarray by macavity1g on 2007-03-12 01:27:42 as ** along with 1 person jfr
  • Classification of human breast cancer using gene expression profiling as a component of the survival predictor algorithm.
    Clin Cancer Res, Vol. 10, No. 7. (1 April 2004), pp. 2272-2283.
    by GV Glinsky, T Higashiyama, AB Glinskii
    posted to breastcancer microarray by macavity1g on 2007-03-12 01:27:15 as ** along with 3 people jfr Ao_Li2007 lyndon
  • Semantic similarity measures as tools for exploring the gene ontology.
    Pac Symp Biocomput (2003), pp. 601-612.
    by PW Lord, RD Stevens, A Brass, CA Goble
    posted to go microarray by macavity1g on 2007-03-12 01:25:36 as ** along with 8 people and 3 groups irenas andytseng CitoJam ejmeij gaudan josemblazquez sgoetz pmidford dbk-lab ilps LanguageModeling
  • Integrated analysis of gene expression by Association Rules Discovery.
    BMC Bioinformatics, Vol. 7 (2006)
    by P Carmona-Saez, M Chagoyen, A Rodriguez, O Trelles, JM Carazo, A Pascual-Montano
    posted to associationrules go microarray by macavity1g on 2007-03-12 01:24:56 as ** along with 2 people and 1 group oannes dps Regulomics_UCHSC
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