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lna's library [429 articles]

最近录入 lna's 文献库.
  • Optimal isotope labelling for NMR protein structure determinations
    Nature, Vol. 440, No. 7080., pp. 52-57.
    by Masatsune Kainosho, Takuya Torizawa, Yuki Iwashita, Tsutomu Terauchi, Akira M Ono, Peter Gã¼ntert
    posted to assignment by lna on 2008-09-03 16:02:08 as **
  • Object-oriented design patterns in Fortran 90/95: mazev1, mazev2 and mazev3
    Computer Physics Communications, Vol. 178, No. 8. (15 April 2008), pp. 611-620.
    by Viktor K Decyk, Henry J Gardner
    posted to fortran by lna on 2008-07-16 10:16:19 as ** along with 1 person peterheng
  • Diagnostic chemical shift markers for loop conformation and substrate and cofactor binding in dihydrofolate reductase complexes.
    Protein Sci, Vol. 12, No. 10. (October 2003), pp. 2230-2238.
    by MJ Osborne, RP Venkitakrishnan, HJ Dyson, PE Wright
    posted to dhfr by lna on 2008-06-27 15:33:28 as ** along with 1 person dgruiz
  • Cell-free translation reconstituted with purified components.
    Nature biotechnology, Vol. 19, No. 8. (August 2001), pp. 751-755.
    by Y Shimizu, A Inoue, Y Tomari, T Suzuki, T Yokogawa, K Nishikawa, T Ueda
    posted to dhfr by lna on 2008-06-27 15:23:30 as **
  • High-throughput analysis of protein NMR spectra
    Progress in Nuclear Magnetic Resonance Spectroscopy, Vol. 46, No. 2-3. (30 May 2005), pp. 109-129.
    by Daniel Malmodin, Martin Billeter
    posted to assignment by lna on 2008-05-09 14:31:17 as **
  • MONTE: An automated Monte Carlo based approach to nuclear magnetic resonance assignment of proteins
    Journal of Biomolecular NMR, Vol. 25, No. 1. (January 2003), pp. 1-9.
    by Kevin T Hitchens, Jonathan A Lukin, Yiping Zhan, Scott A Mccallum, Gordon S Rule
    posted to assignment by lna on 2008-05-09 12:34:40 as **
  • Automated sequence-specific NMR assignment of homologous proteins using the program GARANT
    Journal of Biomolecular NMR, Vol. 7, No. 3. (1 May 1996), pp. 207-213.
    by Christian Bartels, Martin Billeter, Peter Güntert, Kurt Wüthrich
    posted to assignment garant by lna on 2008-05-08 09:23:03 as **
  • Distribution of chemical shifts in 1H nuclear magnetic resonance spectra of proteins
    Journal of Magnetic Resonance (1969), Vol. 76, No. 1. (January 1988), pp. 87-99.
    by Karl-Heinz Groß, Hans R Kalbitzer
    posted to assignment garant by lna on 2008-05-08 09:08:02 as **
  • A high quality nuclear magnetic resonance solution structure of peptide deformylase from Escherichia coli: Application of an automated assignment strategy using GARANT
    Journal of Biomolecular NMR, Vol. 13, No. 4. (1 April 1999), pp. 311-324.
    by John F O'Connell, Kellyann D Pryor, Stephan K Grant, Barbara Leiting
    posted to assignment garant by lna on 2008-05-07 08:58:28 as **
  • Protein NMR Structure Determination with Automated NOE Assignment Using the New Software CANDID and the Torsion Angle Dynamics Algorithm DYANA
    Journal of Molecular Biology, Vol. 319, No. 1. (24 May 2002), pp. 209-227.
    by Torsten Herrmann, Peter Güntert, Kurt Wüthrich
    posted to assignment cyana by lna on 2008-04-30 10:25:09 as **
  • Automated structure determination of proteins by NMR spectroscopy
    Progress in Nuclear Magnetic Resonance Spectroscopy, Vol. 44, No. 1-2. (16 April 2004), pp. 33-96.
    by Wolfram Gronwald, Hans R Kalbitzer
    posted to assignment by lna on 2008-04-30 08:44:18 as **
  • Automated combined assignment of NOESY spectra and three-dimensional protein structure determination.
    Journal of biomolecular NMR, Vol. 10, No. 4. (December 1997), pp. 351-362.
    by C Mumenthaler, P Güntert, W Braun, K Wüthrich
    posted to assignment by lna on 2008-04-22 11:07:45 as **
  • Fully automated sequence-specific resonance assignments of hetero- nuclear protein spectra.
    Journal of biomolecular NMR, Vol. 27, No. 1. (September 2003), pp. 69-79.
    by D Malmodin, CH Papavoine, M Billeter
    posted to assignment by lna on 2008-04-21 11:12:00 as **
  • Influence of the completeness of chemical shift assignments on NMR structures obtained with automated NOE assignment.
    Journal of structural and functional genomics, Vol. 4, No. 2-3. (2003), pp. 179-189.
    by J Jee, P Güntert
    posted to assignment by lna on 2008-04-21 09:38:53 as **
  • Automated analysis of protein NMR assignments and structures.
    Chemical reviews, Vol. 104, No. 8. (August 2004), pp. 3541-3556.
    by MC Baran, YJ Huang, HN Moseley, GT Montelione
    posted to assignment by lna on 2008-04-17 14:05:30 as **
  • Automated analysis of NMR assignments and structures for proteins.
    Current opinion in structural biology, Vol. 9, No. 5. (October 1999), pp. 635-642.
    by HN Moseley, GT Montelione
    posted to assignment by lna on 2008-04-17 13:51:58 as **
  • Torsion angle dynamics for NMR structure calculation with the new program DYANA.
    J Mol Biol, Vol. 273, No. 1. (17 October 1997), pp. 283-298.
    by P Güntert, C Mumenthaler, K Wüthrich
    posted to cyana by lna on 2008-04-16 15:47:30 as ** along with 1 person BragilMassoud
  • Automated protein structure determination from NMR spectra.
    Journal of the American Chemical Society, Vol. 128, No. 40. (11 October 2006), pp. 13112-13122.
    by B López-Méndez, P Güntert
    posted to cyana by lna on 2008-04-16 15:12:38 as **
  • Structural identification of the pathway of long-range communication in an allosteric enzyme
    Proceedings of the National Academy of Sciences, Vol. 105, No. 6. (12 February 2008), pp. 1832-1837.
    by Prafull S Gandhi, Zhiwei Chen, Scott F Mathews, Enrico Di Cera
    posted to allostery pathways by lna on 2008-02-13 12:05:17 as ** along with 2 people and 1 group cactus sobolevnrm baker-group
  • Atom Depth as a Descriptor of the Protein Interior
    Biophys. J., Vol. 84, No. 4. (1 April 2003), pp. 2553-2561.
    by Alessandro Pintar, Oliviero Carugo, Sandor Pongor
    posted to h-bonds by lna on 2008-02-06 12:18:11 as ** along with 1 person kaarsinogen
  • Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features.
    Biopolymers, Vol. 22, No. 12. (December 1983), pp. 2577-2637.
    by W Kabsch, C Sander
    posted to h-bonds by lna on 2008-02-06 12:15:04 as ** along with 15 people kaarsinogen chad_davis wouterboomsma penka ffranca dgront choonpeng leelarcombe rabio gisle medic0747 martainn chgjb mschofie marti
  • Atom depth in protein structure and function.
    Trends Biochem Sci, Vol. 28, No. 11. (November 2003), pp. 593-597.
    by A Pintar, O Carugo, S Pongor
    posted to h-bonds by lna on 2007-12-19 13:19:53 as ** along with 1 person and 2 groups barry structural_bioinformatics Bioinformatics
  • Patterns and networks of hydrogen-bonds in the hydration structure of human lysozyme
    Chemical Physics Letters, Vol. 410, No. 1-3. (10 July 2005), pp. 31-35.
    by Tsuyoshi Yokomizo, Junich Higo, Masayoshi Nakasako
    posted to h-bonds lysozyme md by lna on 2007-12-18 14:15:30 as **
  • Structural determinants of protein dynamics: analysis of 15N NMR relaxation measurements for main-chain and side-chain nuclei of hen egg white lysozyme.
    Biochemistry, Vol. 34, No. 12. (28 March 1995), pp. 4041-4055.
    by M Buck, J Boyd, C Redfield, DA MacKenzie, DJ Jeenes, DB Archer, CM Dobson
    posted to dynamics lysozyme by lna on 2007-08-27 10:39:36 as ** along with 1 person allmensch
  • Structure-based analysis of protein dynamics: comparison of theoretical results for hen lysozyme with X-ray diffraction and NMR relaxation data.
    Proteins, Vol. 37, No. 4. (1 December 1999), pp. 654-667.
    by T Haliloglu, I Bahar
    posted to dynamics gnm lysozyme by lna on 2007-08-27 10:36:41 as ** along with 2 people apaydin allmensch
  • Close agreement between the orientation dependence of hydrogen bonds observed in protein structures and quantum mechanical calculations
    PNAS, Vol. 101, No. 18. (4 May 2004), pp. 6946-6951.
    by Alexandre V Morozov, Tanja Kortemme, Kiril Tsemekhman, David Baker
    posted to h-bonds by lna on 2007-08-15 13:43:42 as **** along with 1 person dgront
  • Temperature-dependence of protein hydrogen bond properties as studied by high-resolution NMR.
    J Mol Biol, Vol. 317, No. 5. (12 April 2002), pp. 739-752.
    by F Cordier, S Grzesiek
    posted to h-bonds by lna on 2007-07-24 14:11:25 as **
  • An empirical approach to protein conformation stability and flexibility.
    Biopolymers, Vol. 22, No. 1. (January 1983), pp. 49-58.
    by TE Creighton
    posted to hydrophobicity by lna on 2007-07-24 14:09:24 as **
  • Integral equation study of hydrophobic interaction: a comparison between the simple point charge model for water and a Lennard-Jones model for solvent.
    J Chem Phys, Vol. 126, No. 14. (14 April 2007)
    by T Sumi, H Sekino
    posted to hydrophobicity by lna on 2007-07-24 12:22:20 as **
  • A fast method for the determination of fractional contributions to solvation in proteins.
    Protein Sci, Vol. 15, No. 11. (November 2006), pp. 2525-2533.
    by D Talavera, A Morreale, T Meyer, A Hospital, C Ferrer-Costa, JL Gelpi, X de la Cruz, R Soliva, FJ Luque, M Orozco
    posted to hydrophobicity by lna on 2007-07-20 14:59:26 as **
  • On the heat-capacity change of pairwise hydrophobic interactions.
    J Chem Phys, Vol. 123, No. 3. (15 July 2005)
    by G Graziano
    posted to hydrophobicity by lna on 2007-07-20 13:24:59 as **
  • Aliphatics vs. aromatics hydration thermodynamics.
    Biophys Chem, Vol. 110, No. 3. (1 August 2004), pp. 249-258.
    by G Graziano
    posted to hydrophobicity by lna on 2007-07-20 13:05:08 as **
  • Molecular lipophilicity in protein modeling and drug design.
    Curr Med Chem, Vol. 14, No. 4. (2007), pp. 393-415.
    by RG Efremov, AO Chugunov, TV Pyrkov, JP Priestle, AS Arseniev, E Jacoby
    posted to hydrophobicity by lna on 2007-07-20 12:57:21 as **
  • Water clustering and percolation in low hydration DNA shells.
    J Phys Chem B, Vol. 111, No. 12. (29 March 2007), pp. 3258-3266.
    by I Brovchenko, A Krukau, A Oleinikova, AK Mazur
    posted to hydrophobicity by lna on 2007-07-20 09:24:42 as **
  • Protein dynamics in a family of laboratory evolved thermophilic enzymes.
    J Mol Biol, Vol. 327, No. 3. (28 March 2003), pp. 745-757.
    by PL Wintrode, D Zhang, N Vaidehi, FH Arnold, WA Goddard
    posted to praktikum by lna on 2007-07-16 10:20:25 as **
  • An analysis of core deformations in protein superfamilies.
    Biophys J, Vol. 88, No. 2. (February 2005), pp. 1291-1299.
    by A Leo-Macias, P Lopez-Romero, D Lupyan, D Zerbino, AR Ortiz
    posted to praktikum by lna on 2007-07-16 10:05:02 as ** along with 7 people and 2 groups apaydin ana barry dimka aqeel insectopalo edvin structural_bioinformatics Bioinformatics
  • Improvement of comparative model accuracy by free-energy optimization along principal components of natural structural variation.
    Proc Natl Acad Sci U S A, Vol. 101, No. 43. (26 October 2004), pp. 15346-15351.
    by B Qian, AR Ortiz, D Baker
    posted to praktikum by lna on 2007-07-16 09:22:35 as ** along with 4 people and 4 groups ana barry marcius dgront structural_bioinformatics Bioinformatics BioinfoCIPF SGU-CIPF
  • Core deformations in protein families: a physical perspective.
    Biophys Chem, Vol. 115, No. 2-3. (1 April 2005), pp. 125-128.
    by A Leo-Macias, P Lopez-Romero, D Lupyan, D Zerbino, AR Ortiz
    posted to praktikum by lna on 2007-07-16 09:19:35 as ** along with 3 people and 2 groups ana dimka edvin structural_bioinformatics Bioinformatics
  • Propagation of dynamic changes in barnase upon binding of barstar: an NMR and computational study.
    J Mol Biol, Vol. 367, No. 4. (6 April 2007), pp. 1079-1092.
    by A Zhuravleva, DM Korzhnev, SB Nolde, LE Kay, AS Arseniev, M Billeter, VY Orekhov
    posted to newexamples by lna on 2007-05-31 09:07:11 as ** along with 1 person jlh64
  • Functional residues serve a dominant role in mediating the cooperativity of the protein ensemble.
    Proc Natl Acad Sci U S A, Vol. 104, No. 11. (13 March 2007), pp. 4347-4352.
    by T Liu, ST Whitten, VJ Hilser
    posted to eglinc newexamples by lna on 2007-04-24 10:52:20 as ** along with 2 people choonpeng mingzhi
  • Conserved quantitative stability/flexibility relationships (QSFR) in an orthologous RNase H pair.
    Proteins, Vol. 62, No. 1. (1 January 2006), pp. 130-143.
    by DR Livesay, DJ Jacobs
    posted to dcm flexibility by lna on 2007-04-18 09:27:12 as ** along with 1 person radestock
  • Computational redesign of protein-protein interaction specificity.
    Nat Struct Mol Biol, Vol. 11, No. 4. (April 2004), pp. 371-379.
    by T Kortemme, LA Joachimiak, AN Bullock, AD Schuler, BL Stoddard, D Baker
    posted to h-bonds by lna on 2007-04-16 14:56:01 as ** along with 6 people jwm bicko ruvido cjeans tale jteyra
  • Computational design of protein-protein interactions.
    Curr Opin Chem Biol, Vol. 8, No. 1. (February 2004), pp. 91-97.
    by T Kortemme, D Baker
    posted to h-bonds by lna on 2007-04-16 14:55:46 as ** along with 5 people jwm bicko hmk cjeans jteyra
  • An orientation-dependent hydrogen bonding potential improves prediction of specificity and structure for proteins and protein-protein complexes.
    J Mol Biol, Vol. 326, No. 4. (28 February 2003), pp. 1239-1259.
    by T Kortemme, AV Morozov, D Baker
    posted to h-bonds by lna on 2007-04-16 14:53:25 as ** along with 2 people and 1 group dgront skoddet Nielsen group
  • Computational design of a new hydrogen bond network and at least a 300-fold specificity switch at a protein-protein interface.
    J Mol Biol, Vol. 361, No. 1. (4 August 2006), pp. 195-208.
    by LA Joachimiak, T Kortemme, BL Stoddard, D Baker
    posted to h-bonds by lna on 2007-04-16 14:51:38 as ** along with 2 people jwm bicko
  • A simple physical model for binding energy hot spots in protein-protein complexes.
    Proc Natl Acad Sci U S A, Vol. 99, No. 22. (29 October 2002), pp. 14116-14121.
    by T Kortemme, D Baker
    posted to h-bonds by lna on 2007-04-16 14:44:17 as ** along with 5 people and 1 group jwm bicko cjeans hmk skoddet Nielsen group
  • A flexible approach for understanding protein stability.
    FEBS Lett, Vol. 576, No. 3. (22 October 2004), pp. 468-476.
    by DR Livesay, S Dallakyan, GG Wood, DJ Jacobs
    posted to dcm flexibility by lna on 2007-04-12 14:35:48 as ** along with 3 people and 1 group radestock aqeel Einat structural_bioinformatics
  • Elucidating protein thermodynamics from the three-dimensional structure of the native state using network rigidity.
    Biophys J, Vol. 88, No. 2. (February 2005), pp. 903-915.
    by DJ Jacobs, S Dallakyan
    posted to dcm networks by lna on 2007-04-12 14:28:19 as **
  • Elucidating quantitative stability/flexibility relationships within thioredoxin and its fragments using a distance constraint model.
    J Mol Biol, Vol. 358, No. 3. (5 May 2006), pp. 882-904.
    by DJ Jacobs, DR Livesay, J Hules, ML Tasayco
    posted to dcm flexibility by lna on 2007-04-12 14:19:04 as **
  • Relationships between protein structure and dynamics from a database of NMR-derived backbone order parameters.
    J Mol Biol, Vol. 295, No. 4. (28 January 2000), pp. 963-978.
    by JL Goodman, MD Pagel, MJ Stone
    posted to dynamics by lna on 2007-04-12 10:42:28 as ** along with 1 person apaydin
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