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larsjuhljensen's library [54 articles]

最近录入 larsjuhljensen's 文献库.
  • Visualizing Spatiotemporal Dynamics of Multicellular Cell-Cycle Progression
    Cell, Vol. 132, No. 3. (8 February 2008), pp. 487-498.
    by Asako Sakaue-Sawano, Hiroshi Kurokawa, Toshifumi Morimura, Aki Hanyu, Hiroshi Hama, Hatsuki Osawa, Saori Kashiwagi, Kiyoko Fukami, Takaki Miyata, Hiroyuki Miyoshi, Takeshi Imamura, Masaharu Ogawa, Hisao Masai, Atsushi Miyawaki
    posted to cell-cycle imaging regulation by larsjuhljensen on 2008-04-06 15:38:33 as read along with 3 people jyuh NicMag yavanna
  • Scoring functions for computational algorithms applicable to the design of spiked oligonucleotides
    Nucl. Acids Res., Vol. 26, No. 3. (1 February 1998), pp. 697-702.
    by Lj Jensen, Kv Andersen, A Svendsen, T Kretzschmar
    posted to degenerate-primers mutagenesis by larsjuhljensen on 2008-03-24 15:20:21 as read along with 1 person P2324548
  • Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima.
    Nucleic Acids Res, Vol. 28, No. 3. (1 February 2000), pp. 706-709.
    by P Worning, LJ Jensen, KE Nelson, S Brunak, DW Ussery
    posted to dna-structure horizontal-transfer lateral-transfer periodicity by larsjuhljensen on 2008-03-24 15:19:04 as read along with 1 person karfunkel
  • Three views of microbial genomes.
    Res Microbiol, Vol. 150, No. 9-10. (c 1999), pp. 773-777.
    by LJ Jensen, C Friis, DW Ussery
    posted to dna-structure genome-visualization by larsjuhljensen on 2008-03-24 15:17:57 as read
  • A DNA structural atlas for Escherichia coli.
    J Mol Biol, Vol. 299, No. 4. (16 June 2000), pp. 907-930.
    by AG Pedersen, LJ Jensen, S Brunak, HH Staerfeldt, DW Ussery
    posted to dna-structure genome-visualization promoters by larsjuhljensen on 2008-03-24 15:17:06 as read
  • Visualization of pathogenicity regions in bacteria.
    Genetica, Vol. 108, No. 1. (2000), pp. 47-51.
    by C Friis, LJ Jensen, DW Ussery
    posted to genome-visualization by larsjuhljensen on 2008-03-24 15:16:21 as read
  • Automatic discovery of regulatory patterns in promoter regions based on whole cell expression data and functional annotation.
    Bioinformatics, Vol. 16, No. 4. (April 2000), pp. 326-333.
    by LJ Jensen, S Knudsen
    posted to expression function promoters by larsjuhljensen on 2008-03-24 15:15:40 as read
  • On the total number of genes and their length distribution in complete microbial genomes.
    Trends Genet, Vol. 17, No. 8. (August 2001), pp. 425-428.
    by M Skovgaard, LJ Jensen, S Brunak, D Ussery, A Krogh
    posted to annotation gene-finding by larsjuhljensen on 2008-03-24 15:14:52 as read along with 1 person knaseanka
  • Orphan protein function and its relation to glycosylation.
    Ernst Schering Res Found Workshop, No. 38. (2002), pp. 276-294.
    by R Gupta, LJ Jensen, S Brunak
    posted to function glycosylation machine-learning protein-features by larsjuhljensen on 2008-03-24 15:13:54 as read
  • Prediction of human protein function from post-translational modifications and localization features.
    J Mol Biol, Vol. 319, No. 5. (21 June 2002), pp. 1257-1265.
    by LJ Jensen, R Gupta, N Blom, D Devos, J Tamames, C Kesmir, H Nielsen, HH Staerfeldt, K Rapacki, C Workman, CA Andersen, S Knudsen, A Krogh, A Valencia, S Brunak
    posted to function machine-learning protein-features by larsjuhljensen on 2008-03-24 15:12:47 as read along with 3 people lyongu Iddo eweaver
  • A new non-linear normalization method for reducing variability in DNA microarray experiments.
    Genome Biol, Vol. 3, No. 9. (30 August 2002)
    by C Workman, LJ Jensen, H Jarmer, R Berka, L Gautier, HB Nielser, HH Saxild, C Nielsen, S Brunak, S Knudsen
    posted to expression microarrays normalization by larsjuhljensen on 2008-03-24 15:11:59 as read
  • Prediction of novel archaeal enzymes from sequence-derived features.
    Protein Sci, Vol. 11, No. 12. (December 2002), pp. 2894-2898.
    by LJ Jensen, M Skovgaard, S Brunak
    posted to function machine-learning protein-features by larsjuhljensen on 2008-03-24 15:10:47 as read
  • Prediction of human protein function according to Gene Ontology categories
    Bioinformatics, Vol. 19, No. 5. (22 March 2003), pp. 635-642.
    by LJ Jensen, R Gupta, HH Staerfeldt, S Brunak
    posted to function machine-learning protein-features by larsjuhljensen on 2008-03-24 15:09:56 as read along with 1 person sgoetz
  • Analysis of two large functionally uncharacterized regions in the Methanopyrus kandleri AV19 genome.
    BMC Genomics, Vol. 4, No. 1. (2 April 2003)
    by LJ Jensen, M Skovgaard, T Sicheritz-Pontén, MK Jørgensen, C Lundegaard, CC Pedersen, N Petersen, D Ussery
    posted to genome-visualization protein-features by larsjuhljensen on 2008-03-24 15:09:02 as read
  • Protein feature based identification of cell cycle regulated proteins in yeast.
    J Mol Biol, Vol. 329, No. 4. (13 June 2003), pp. 663-674.
    by U de Lichtenberg, TS Jensen, LJ Jensen, S Brunak
    posted to cell-cycle machine-learning protein-features by larsjuhljensen on 2008-03-24 15:07:48 as read
  • Functionality of system components: conservation of protein function in protein feature space.
    Genome Res, Vol. 13, No. 11. (November 2003), pp. 2444-2449.
    by LJ Jensen, DW Ussery, S Brunak
    posted to evolution function machine-learning orthology protein-features by larsjuhljensen on 2008-03-24 15:05:15 as read
  • Protein disorder prediction: implications for structural proteomics.
    Structure, Vol. 11, No. 11. (November 2003), pp. 1453-1459.
    by R Linding, LJ Jensen, F Diella, P Bork, TJ Gibson, RB Russell
    posted to disorder machine-learning proteins by larsjuhljensen on 2008-03-24 15:03:57 as read along with 1 person chad_davis
  • Feature-based prediction of non-classical and leaderless protein secretion.
    Protein Eng Des Sel, Vol. 17, No. 4. (April 2004), pp. 349-356.
    by JD Bendtsen, LJ Jensen, N Blom, G Von Heijne, S Brunak
    posted to machine-learning protein-features by larsjuhljensen on 2008-03-24 15:02:40 as read
  • Protein interaction networks from yeast to human.
    Curr Opin Struct Biol, Vol. 14, No. 3. (June 2004), pp. 292-299.
    by P Bork, LJ Jensen, C von Mering, AK Ramani, I Lee, EM Marcotte
    posted to interactions networks by larsjuhljensen on 2008-03-24 15:01:45 as read along with 8 people kuhn koller grahamc cjeans lpfernandes selrac Evangelia hevol
  • ArrayProspector: a web resource of functional associations inferred from microarray expression data.
    Nucleic Acids Res, Vol. 32, No. Web Server issue. (1 July 2004)
    by LJ Jensen, J Lagarde, C von Mering, P Bork
    posted to expression interactions networks by larsjuhljensen on 2008-03-24 15:00:52 as read along with 2 people and 2 groups okarsligil lfriedl kdl Bioinformatics
  • Analysis of genomic context: prediction of functional associations from conserved bidirectionally transcribed gene pairs
    Nat Biotech, Vol. 22, No. 7. (July 2004), pp. 911-917.
    by Jan O Korbel, Lars J Jensen, Christian von Mering, Peer Bork
    posted to function genomic-context interactions by larsjuhljensen on 2008-03-24 14:59:58 as read along with 4 people and 1 group bicko balajis nickluscombe olympos EBI-regulation
  • Comparison of computational methods for the identification of cell cycle-regulated genes.
    Bioinformatics, Vol. 21, No. 7. (1 April 2005), pp. 1164-1171.
    by U de Lichtenberg, LJ Jensen, A Fausbøll, TS Jensen, P Bork, S Brunak
    posted to cell-cycle expression regulation by larsjuhljensen on 2008-03-24 14:58:10 as read along with 2 people and 1 group nickluscombe phoenixzxl EBI-regulation
  • STRING: known and predicted protein-protein associations, integrated and transferred across organisms.
    Nucleic Acids Res, Vol. 33, No. Database issue. (1 January 2005)
    by C von Mering, LJ Jensen, B Snel, SD Hooper, M Krupp, M Foglierini, N Jouffre, MA Huynen, P Bork
    posted to interactions networks proteins by larsjuhljensen on 2008-03-24 14:57:15 as read along with 6 people and 2 groups kuhn lfriedl nickluscombe koller iris_2001 Evangelia kdl EBI-regulation
  • Dynamic complex formation during the yeast cell cycle.
    Science, Vol. 307, No. 5710. (4 February 2005), pp. 724-727.
    by U de Lichtenberg, LJ Jensen, S Brunak, P Bork
    posted to cell-cycle complexes degradation expression interactions networks phosphorylation regulation by larsjuhljensen on 2008-03-24 14:55:06 as read along with 9 people and 1 group mdimmic chad_davis balajis wnpx koller massivemayhem cjeans arne phoenixzxl dIEMoSIRIS
  • Re-analysis of data and its integration
    FEBS Letters, Vol. 579, No. 8. (21 March 2005), pp. 1802-1807.
    by Lars J Jensen, Lars M Steinmetz
    posted to expression interactions systems-biology by larsjuhljensen on 2008-03-24 14:53:55 as read along with 4 people and 1 group monocyte pcahan1 raiyar Carlton steinmetzlab
  • Systematic Association of Genes to Phenotypes by Genome and Literature Mining.
    PLoS Biol, Vol. 3, No. 5. (5 April 2005)
    by Jan O O Korbel, Tobias Doerks, Lars J J Jensen, Carolina Perez-Iratxeta, Szymon Kaczanowski, Sean D D Hooper, Miguel A A Andrade, Peer Bork
    posted to genes literature-mining phenotypes by larsjuhljensen on 2008-03-24 14:52:02 as read along with 12 people and 1 group Enro setar miguel tmmurali kuhn imouthesmp yas balajis benny hpiwowar fisherp jdiggans T_lab
  • Systems biology: in the broadest sense of the word
    Environmental Microbiology, Vol. 7, No. 4. (April 2005), pp. 482-483.
    by W Ussery, Jensen L Juhl
    posted to systems-biology by larsjuhljensen on 2008-03-24 14:50:30 as read along with 2 people wnpx biosv
  • Large-scale extraction of gene regulation for model organisms in an ontological context.
    In Silico Biol, Vol. 5, No. 1. (2005), pp. 21-32.
    by J Saric, LJ Jensen, I Rojas
    posted to expression information-extraction regulation by larsjuhljensen on 2008-03-24 14:49:10 as read
  • Extraction of regulatory gene/protein networks from Medline.
    Bioinformatics (26 July 2005)
    by Jasmin Saric, Lars Juhl J Jensen, Rossitza Ouzounova, Isabel Rojas, Peer Bork
    posted to expression information-extraction phosphorylation regulation by larsjuhljensen on 2008-03-24 14:47:06 as read along with 4 people and 1 group kuhn balajis caporaso helliontroy biomedical-nlp
  • Extraction of transcript diversity from scientific literature.
    PLoS Comput Biol, Vol. 1, No. 1. (June 2005)
    by PK Shah, LJ Jensen, S Boué, P Bork
    posted to alternative-splicing information-extraction by larsjuhljensen on 2008-03-24 14:45:46 as read along with 3 people and 1 group Cortel yas zlu T_lab
  • Spore number control and breeding in Saccharomyces cerevisiae: a key role for a self-organizing system.
    J Cell Biol, Vol. 171, No. 4. (21 November 2005), pp. 627-640.
    by C Taxis, P Keller, Z Kavagiou, LJ Jensen, J Colombelli, P Bork, EH Stelzer, M Knop
    posted to sporulation by larsjuhljensen on 2008-03-24 14:44:59 as read
  • Literature mining for the biologist: from information retrieval to biological discovery
    Nature Reviews Genetics, Vol. 7, No. 2., pp. 119-129.
    by Lars J Jensen, Jasmin Saric, Peer Bork
    posted to data-mining entity-recognition information-extraction information-retrieval literature-mining text-mining by larsjuhljensen on 2008-03-24 13:57:58 as read along with 22 people and 3 groups TheresaNiederberger Enro jyuh kuhn yas dullhunk hpiwowar dgront caporaso zlu jacky957 lynnefox jdiggans cjeans ghattem michaelmampaey ibuch dejori jandot mircea farzanehs adoms T_lab biomedical-nlp ADMiRes
  • Origin of replication in circular prokaryotic chromosomes
    Environmental Microbiology, Vol. 8, No. 2. (February 2006), pp. 353-361.
    by Peder Worning, Lars J Jensen, Peter F Hallin, Hans-Henrik Staerfeldt, David W Ussery
    posted to origin replication by larsjuhljensen on 2008-03-24 13:56:56 as read along with 2 people operon AaronDarling
  • Proteome survey reveals modularity of the yeast cell machinery
    Nature (22 January 2006)
    by Anne-Claude Gavin, Patrick Aloy, Paola Grandi, Roland Krause, Markus Boesche, Martina Marzioch, Christina Rau, Lars J Jensen, Sonja Bastuck, Birgit Dümpelfeld, Angela Edelmann, Marie-Anne Heurtier, Verena Hoffman, Christian Hoefert, Karin Klein, Manuela Hudak, Anne-Marie Michon, Malgorzata Schelder, Markus Schirle, Marita Remor, Tatjana Rudi, Sean Hooper, Andreas Bauer, Tewis Bouwmeester, Georg Casari, Gerard Drewes, Gitte Neubauer, Jens M Rick, Bernhard Kuster, Peer Bork, Robert B Russell, Giulio Superti-Furga
    posted to complexes interactions networks proteins by larsjuhljensen on 2008-03-24 13:55:50 as read along with 19 people and 10 groups Yanno ana Borelli lfriedl ccots jmeppley chad_davis balajis xico shantanu nirfriedman balabu dgront noano koller ruvido nicoleq lpfernandes phoenixzxl structural_bioinformatics kdl MathBio Biostatistics Bioinformatics microRNA Computational_Systems_Biology EvolutionaryComputation Computational-Neurobiology WetBiology
  • Identification and analysis of evolutionarily cohesive functional modules in protein networks.
    Genome Res (31 January 2006)
    by Mónica Campillos, Christian von Mering, Lars Juhl J Jensen, Peer Bork
    posted to evolution function networks proteins by larsjuhljensen on 2008-03-24 13:54:38 as read along with 6 people and 2 groups lfriedl balajis nirfriedman nickluscombe koller dbgoodman kdl EBI-regulation
  • The more the merrier: comparative analysis of microarray studies on cell cycle-regulated genes in fission yeast.
    Yeast, Vol. 23, No. 4. (March 2006), pp. 261-277.
    by S Marguerat, TS Jensen, U de Lichtenberg, BT Wilhelm, LJ Jensen, J Bähler
    posted to cell-cycle expression regulation by larsjuhljensen on 2008-03-24 13:53:35 as read
  • A temporal map of transcription factor activity: mef2 directly regulates target genes at all stages of muscle development.
    Dev Cell, Vol. 10, No. 6. (June 2006), pp. 797-807.
    by T Sandmann, LJ Jensen, JS Jakobsen, MM Karzynski, MP Eichenlaub, P Bork, EE Furlong
    posted to development expression regulation by larsjuhljensen on 2008-03-24 13:52:38 as read
  • Co-evolution of transcriptional and post-translational cell-cycle regulation
    Nature (27 September 2006)
    by Lars J Jensen, Thomas S Jensen, Ulrik de Lichtenberg, Søren Brunak, Peer Bork
    posted to cell-cycle complexes degradation evolution expression phosphorylation regulation by larsjuhljensen on 2008-03-24 13:50:23 as read along with 7 people and 1 group JAShapiro adepace koller olympos ccr cjeans kluck EisenLab
  • Assessing Systems Properties of Yeast Mitochondria through an Interaction Map of the Organelle
    PLoS Genetics, Vol. 2, No. 10. (1 October 2006), e170.
    by Fabiana Perocchi, Lars J Jensen, Julien Gagneur, Uwe Ahting, Christian von Mering, Peer Bork, Holger Prokisch, Lars M Steinmetz
    posted to expression interactions mitochondria networks by larsjuhljensen on 2008-03-24 13:48:59 as read along with 1 person kristen
  • STRING 7--recent developments in the integration and prediction of protein interactions.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by C von Mering, LJ Jensen, M Kuhn, S Chaffron, T Doerks, B Krüger, B Snel, P Bork
    posted to interactions networks proteins by larsjuhljensen on 2008-03-24 13:47:40 as read along with 6 people jyuh kuhn balajis fisherp raiyar massivemayhem
  • Identification of tightly regulated groups of genes during Drosophila melanogaster embryogenesis
    Mol Syst Biol, Vol. 3 (16 January 2007)
    by Sean D Hooper, Stephanie Boue, Roland Krause, Lars J Jensen, Christopher E Mason, Murad Ghanim, Kevin P White, Eileen EM Furlong, Peer Bork
    posted to development expression regulation by larsjuhljensen on 2008-03-24 13:42:10 as read along with 4 people and 1 group indigoviolet dpollard adepace uz_labu_laimi EisenLab
  • Quantitative Phylogenetic Assessment of Microbial Communities in Diverse Environments
    Science, Vol. 315, No. 5815. (23 February 2007), pp. 1126-1130.
    by C von Mering, P Hugenholtz, J Raes, SG Tringe, T Doerks, LJ Jensen, N Ward, P Bork
    posted to metagenomics by larsjuhljensen on 2008-03-24 13:41:08 as read along with 9 people and 4 groups ana nickluscombe michC bluto agg19954 TaqSys azazello Thaverkamp rvgomes structural_bioinformatics Bioinformatics EBI-regulation Microbial-Ecology
  • SuperTarget and Matador: resources for exploring drug-target relationships.
    Nucleic Acids Res (16 October 2007)
    by Stefan Günther, Michael Kuhn, Mathias Dunkel, Monica Campillos, Christian Senger, Evangelia Petsalaki, Jessica Ahmed, Eduardo Garcia G Urdiales, Andreas Gewiess, Lars Juhl J Jensen, Reinhard Schneider, Roman Skoblo, Robert B B Russell, Philip E E Bourne, Peer Bork, Robert Preissner
    posted to chemicals interactions networks proteins by larsjuhljensen on 2008-03-24 13:38:16 as read along with 6 people jyuh mdimmic chad_davis daevans massivemayhem Evangelia
  • Systematic discovery of in vivo phosphorylation networks.
    Cell, Vol. 129, No. 7. (29 June 2007), pp. 1415-1426.
    by R Linding, LJ Jensen, GJ Ostheimer, MA van Vugt, C Jørgensen, IM Miron, F Diella, K Colwill, L Taylor, K Elder, P Metalnikov, V Nguyen, A Pasculescu, J Jin, JG Park, LD Samson, JR Woodgett, RB Russell, P Bork, MB Yaffe, T Pawson
    posted to networks phosphorylation signaling by larsjuhljensen on 2008-03-24 13:35:22 as read along with 12 people and 2 groups daed Evangelia renatomilani jyuh skhadar julius zwang cdppublications lp2 psique robrussell snowcrash SysbioMPI-TCells Durbin group
  • Evolution of cell cycle control: same molecular machines, different regulation.
    Cell Cycle, Vol. 6, No. 15. (1 August 2007), pp. 1819-1825.
    by U de Lichtenberg, TS Jensen, S Brunak, P Bork, LJ Jensen
    posted to cell-cycle complexes evolution expression phosphorylation regulation by larsjuhljensen on 2008-03-24 13:34:17 as read
  • Quantitative assessment of protein function prediction from metagenomics shotgun sequences
    Proceedings of the National Academy of Sciences, Vol. 104, No. 35. (28 August 2007), pp. 13913-13918.
    by ED Harrington, AH Singh, T Doerks, I Letunic, C von Mering, LJ Jensen, J Raes, P Bork
    posted to function metagenomics proteins by larsjuhljensen on 2008-03-24 13:32:15 as read along with 2 people michC bluto
  • Cyclebase.org--a comprehensive multi-organism online database of cell-cycle experiments.
    Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008)
    by NP Gauthier, ME Larsen, R Wernersson, U de Lichtenberg, LJ Jensen, S Brunak, TS Jensen
    posted to cell-cycle expression regulation by larsjuhljensen on 2008-03-24 13:31:15 as read
  • eggNOG: automated construction and annotation of orthologous groups of genes
    Nucl. Acids Res. (16 October 2007), gkm796.
    by Lars J Jensen, Philippe Julien, Michael Kuhn, Christian von Mering, Jean Muller, Tobias Doerks, Peer Bork
    posted to evolution orthology by larsjuhljensen on 2008-03-24 13:30:01 as read along with 5 people jyuh jmeppley maximilianh Thaverkamp hplatero
  • NetworKIN: a resource for exploring cellular phosphorylation networks.
    Nucleic Acids Res, Vol. 36, No. Database issue. (January 2008)
    by R Linding, LJ Jensen, A Pasculescu, M Olhovsky, K Colwill, P Bork, MB Yaffe, T Pawson
    posted to networks phosphorylation signaling by larsjuhljensen on 2008-03-24 13:29:08 as read along with 1 person brianb
  • Enhanced function annotations for Drosophila serine proteases: a case study for systematic annotation of multi-member gene families.
    Gene, Vol. 407, No. 1-2. (15 January 2008), pp. 199-215.
    by PK Shah, LP Tripathi, LJ Jensen, M Gahnim, C Mason, EE Furlong, V Rodrigues, KP White, P Bork, R Sowdhamini
    posted to function proteins by larsjuhljensen on 2008-03-24 13:27:08 as read
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