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kengg's network [64 articles]

当前文献位于 kengg's 文献库 标签分类为 network. You can also see everyone's network.
  • Geometric Interpretation of Gene Coexpression Network Analysis
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000117.
    by Steve Horvath, Jun Dong
    posted to statics network coexpression bioinformatics by kengg on 2008-08-23 23:08:15 as ** along with 6 people roys Borelli davidchavalarias AbnerCYH Totobox Ema
  • Core transcriptional regulatory circuitry in human embryonic stem cells.
    Cell, Vol. 122, No. 6. (23 September 2005), pp. 947-956.
    by LA Boyer, TI Lee, MF Cole, SE Johnstone, SS Levine, JP Zucker, MG Guenther, RM Kumar, HL Murray, RG Jenner, DK Gifford, DA Melton, R Jaenisch, RA Young
    posted to tfs network human genome-wide es chip by kengg on 2008-08-06 14:06:57 as ** along with 13 people Stew dquest brant rklancer kentsis tardigrade balicea tabu cconboy koller faisalm mikaelhuss tdmckee
  • The evolution of plant regulatory networks: what Arabidopsis cannot say for itself.
    Current opinion in plant biology, Vol. 10, No. 6. (December 2007), pp. 653-659.
    by J Nardmann, W Werr
    posted to tfs review network maize homeodomain arabidopsis by kengg on 2008-07-22 21:25:08 as ** along with 2 people Borelli carlk
  • Integration of External Signaling Pathways with the Core Transcriptional Network in Embryonic Stem Cells
    Cell, Vol. 133, No. 6. (13 June 2008), pp. 1106-1117.
    by Xi Chen, Han Xu, Ping Yuan, Fang Fang, Mikael Huss, Vinsensius B Vega, Eleanor Wong, Yuriy L Orlov, Weiwei Zhang, Jianming Jiang, Yuin-Han Loh, Hock C Yeo, Zhen X Yeo, Vipin Narang, Kunde R Govindarajan, Bernard Leong, Atif Shahab, Yijun Ruan, Guillaume Bourque, Wing-Kin Sung, Neil D Clarke, Chia-Lin Wei, Huck-Hui Ng
    posted to tfs network high-throughput genome-wide chip bioinformatics by kengg on 2008-07-14 16:09:02 as ** along with 4 people gdb inesdesantiago caseybrown jjray
  • Unraveling Protein Networks with Power Graph Analysis
    PLoS Comput Biol, Vol. 4, No. 7. (11 July 2008), e1000108.
    by Loïc Royer, Matthias Reimann, Bill Andreopoulos, Michael Schroeder
    posted to network bioinformatics by kengg on 2008-07-12 21:27:04 as ** along with 17 people and 2 groups rsantana sebk roys lptolik MatthiasReimann jmuhlich AbnerCYH royerloic tmmurali stajich chad_davis renatomilani askrajiv Borelli nuin reyez Ema OPIG Berkeley Mycology
  • Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks.
    Nature genetics (15 June 2008)
    by Jun Zhu, Bin Zhang, Erin N N Smith, Becky Drees, Rachel B B Brem, Leonid Kruglyak, Roger E E Bumgarner, Eric E E Schadt
    posted to yeast tfs systems network coexpression by kengg on 2008-06-19 21:54:39 as ** along with 10 people srp33 caseybrown djkt marck roys jyuh realzhang tmmurali ptrobajo maralena
  • Systems biology: Merging data means more powerful networks
    Nat Rev Genet, Vol. 9, No. 7. (July 2008), pp. 501-501.
    by Patrick Goymer
    posted to systems review network coexpression by kengg on 2008-06-19 21:51:05 as ** along with 3 people marck renatomilani reyez
  • Transcription factors for predictive plant metabolic engineering: are we there yet?
    Current opinion in biotechnology, Vol. 19, No. 2. (April 2008), pp. 138-144.
    by E Grotewold
    posted to tfs review network metabolite by kengg on 2008-06-08 20:30:57 as **
  • Hierarchical structure and the prediction of missing links in networks
    Nature, Vol. 453, No. 7191., pp. 98-101.
    by Aaron Clauset, Cristopher Moore, MEJ Newman
    posted to network coexpression bioinformatics by kengg on 2008-05-30 16:02:56 as ** along with 36 people lfriedl sen_cheng jjray rds Borelli ptrobajo apwesolowski dpf cmmorel fbaroni balicea cmor pbull jago Ema gtgt15 hryk nedwards i-stevenson pinney elsantosneto markusd eyliu craigwilson06 jyuh margaritis gagliol bryanhughes akshat tmmurali cactus AbnerCYH tny briordan deanmalmgren soramame_0518
  • What is principal component analysis?
    Nature Biotechnology, Vol. 26, No. 3., pp. 303-304.
    by Markus Ringnér
    posted to review network bioinformatics by kengg on 2008-05-30 15:59:29 as ** along with 54 people and 3 groups Nici jdiezperezj mjoach ale rrbarb HugoMarcelo tharris rsantana laharrin chrissp100 xingxu dekay23 rvosa i-stevenson dimka dayjm markusd ashko craigwilson06 abbie_riner quianominorleo bibay2004 jfr kristgy pavanghatty rchauhan waghsk hpaces adacier fryanpan sobolevnrm Yanno jyuh operon barry baaic dullhunk Bevan_Weir zeji gareth massivemayhem zwang GustavoLacerda GeeSharpMinor bmaust zambujo mingzhi starz1010101 maralena wchannels sunhwan jennifermbui kdelavega zhouyu FAB-lab Bioinformatics baker-group
  • Cytoscape ESP: simple search of complex biological networks.
    Bioinformatics (Oxford, England) (28 April 2008)
    by Maital Ashkenazi, Gary D D Bader, Allan Kuchinsky, Menachem Moshelion, David J J States
    posted to systems network bioinformatics by kengg on 2008-05-15 16:49:19 as ** along with 4 people renatomilani grahamc jyuh maralena
  • Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Yuji Zhang, Jianhua Xuan, Benildo, Robert Clarke, Habtom Ressom
    posted to tfs network coexpression bioinformatics by kengg on 2008-04-24 01:35:28 as ** along with 5 people jyuh bertelsen bootsy dquest robertvandenberg
  • Extraction of correlated gene clusters from multiple genomic data by generalized kernel canonical correlation analysis.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by Y Yamanishi, JP Vert, A Nakaya, M Kanehisa
    posted to bioinformatics coexpression network by kengg on 2008-04-17 15:51:29 as ** along with 1 person bioinfo
  • A comprehensive two-hybrid analysis to explore the yeast protein interactome.
    Proc Natl Acad Sci U S A, Vol. 98, No. 8. (10 April 2001), pp. 4569-4574.
    by T Ito, T Chiba, R Ozawa, M Yoshida, M Hattori, Y Sakaki
    posted to bioinformatics microarray network yeast by kengg on 2008-04-17 15:39:40 as ** along with 14 people and 2 groups carlk csanford adiel dragonrez okarsligil lfriedl chad_davis balajis nuke2005 ruvido gcalda lpfernandes shikin hplatero kdl Bioinformatics
  • Current approaches to gene regulatory network modelling.
    BMC Bioinformatics, Vol. 8 Suppl 6 (2007)
    by T Schlitt, A Brazma
    posted to bioinformatics network review by kengg on 2008-04-01 20:51:55 as ** along with 4 people bertelsen shigepong ramakris nicholasflann
  • Genome-wide expression profiling of the Arabidopsis female gametophyte identifies families of small, secreted proteins.
    PLoS Genet, Vol. 3, No. 10. (October 2007), pp. 1848-1861.
    by MW Jones-Rhoades, JO Borevitz, D Preuss
    posted to bioinformatics coexpression meiosis network by kengg on 2008-03-08 04:20:15 as **
  • On the relation between promoter divergence and gene expression evolution
    Mol Syst Biol, Vol. 4 (15 January 2008)
    by Itay Tirosh, Adina Weinberger, Dana Bezalel, Mark Kaganovich, Naama Barkai
    posted to bioinformatics hint network tfs by kengg on 2008-03-07 19:20:12 as ** along with 8 people and 2 groups Jporci balicea zwang biomcgary cisevol caseybrown renatomilani mclarenv cis-regulatory-evolution BergmanLab
  • Integrating high-content screening and ligand-target prediction to identify mechanism of action.
    Nat Chem Biol, Vol. 4, No. 1. (January 2008), pp. 59-68.
    by DW Young, A Bender, J Hoyt, E McWhinnie, GW Chirn, CY Tao, JA Tallarico, M Labow, JL Jenkins, TJ Mitchison, Y Feng
    posted to high-throughput network small-molecule by kengg on 2008-02-13 16:09:29 as ***** along with 3 people Yanno jyuh kuhn
  • Network-based classification of breast cancer metastasis
    Mol Syst Biol, Vol. 3 (16 October 2007)
    by Han-Yu Chuang, Eunjung Lee, Yu-Tsueng Liu, Doheon Lee, Trey Ideker
    posted to bioinformatics coexpression network systems by kengg on 2008-02-03 02:58:04 as ** along with 14 people and 2 groups saman_vp verdicchio jfr frohike mikaelhuss cjeans zwang cerami abhattac shikin oelemento roys ptrobajo dap5087 Bioinformatics GeneGo
  • Unbiased characterization of genotype-dependent metabolic regulations by metabolomic approach in Arabidopsis thaliana
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Miyako Kusano, Atsushi Fukushima, Masanori Arita, Par Jonsson, Thomas Moritz, Makoto Kobayashi, Naomi Hayashi, Takayuki Tohge, Kazuki Saito
    posted to genome-wide metabolite network by kengg on 2008-01-31 04:07:52 as **
  • Programming gene expression with combinatorial promoters
    Mol Syst Biol, Vol. 3 (13 November 2007)
    by Robert S Cox, Michael G Surette, Michael B Elowitz
    posted to bioinformatics network systems tfs by kengg on 2008-01-20 01:27:55 as ** along with 14 people and 2 groups tresch Retchless tmmurali austin dpollard balicea dbikard margaritis lusk cjeans zwang discreteonyxorb cabbagezs Ema EisenLab SynBioSys
  • Genome-Wide High-Resolution Mapping of Exosome Substrates Reveals Hidden Features in the Arabidopsis Transcriptome
    Cell, Vol. 131, No. 7. (28 December 2007), pp. 1340-1353.
    by Julia A Chekanova, Brian D Gregory, Sergei V Reverdatto, Huaming Chen, Ravi Kumar, Tanya Hooker, Junshi Yazaki, Pinghua Li, Nikolai Skiba, Qian Peng, Jose Alonso, Vladimir Brukhin, Ueli Grossniklaus, Joseph R Ecker, Dmitry A Belostotsky
    posted to bioinformatics network by kengg on 2008-01-17 21:56:17 as **
  • Transcriptional coordination of the metabolic network in Arabidopsis.
    Plant Physiol, Vol. 142, No. 2. (October 2006), pp. 762-774.
    by H Wei, S Persson, T Mehta, V Srinivasasainagendra, L Chen, GP Page, C Somerville, A Loraine
    posted to bioinformatics metabolite network by kengg on 2008-01-17 21:40:48 as **
  • Understanding Network Concepts in Modules
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Jun Dong, Steve Horvath
    posted to bioinformatics coexpression network by kengg on 2008-01-17 21:30:09 as ** along with 4 people and 1 group kaihsyn jfr grahamc natstreet Bioinformatics
  • Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut library for R
    Bioinformatics (16 November 2007), btm563.
    by Peter Langfelder, Bin Zhang, Steve Horvath
    posted to bioinformatics coexpression network by kengg on 2008-01-16 22:12:33 as **
  • A general framework for weighted gene co-expression network analysis.
    Stat Appl Genet Mol Biol, Vol. 4, No. 1. (2005)
    by B Zhang, S Horvath
    posted to bioinformatics coexpression network by kengg on 2008-01-16 21:53:52 as ** along with 3 people and 1 group jo_davies jeremymiller natstreet GeschwindLab
  • Integrating Genetic and Network Analysis to Characterize Genes Related to Mouse Weight.
    PLoS Genet, Vol. 2, No. 8. (18 August 2006)
    by Anatole Ghazalpour, Sudheer Doss, Bin Zhang, Susanna Wang, Christopher Plaisier, Ruth Castellanos, Alec Brozell, Eric E E Schadt, Thomas A A Drake, Aldons J J Lusis, Steve Horvath
    posted to bioinformatics coexpression network by kengg on 2008-01-16 21:53:34 as ** along with 6 people and 1 group Maelys koller giovanni jeremymiller natstreet jo_davies GeschwindLab
  • Network neighborhood analysis with the multi-node topological overlap measure.
    Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 222-231.
    by A Li, S Horvath
    posted to bioinformatics coexpression network by kengg on 2008-01-16 21:53:05 as ** along with 1 person and 1 group jeremymiller GeschwindLab
  • Conservation and evolution of gene coexpression networks in human and chimpanzee brains
    PNAS, Vol. 103, No. 47. (21 November 2006), pp. 17973-17978.
    by Michael C Oldham, Steve Horvath, Daniel H Geschwind
    posted to bioinformatics coexpression network by kengg on 2008-01-16 21:51:21 as ** along with 7 people and 2 groups giovanni balicea adepace EsepBib jeremymiller cckan nosada17 EisenLab GeschwindLab
  • Dynamic Changes in Subgraph Preference Profiles of Crucial Transcription Factors
    PLoS Computational Biology, Vol. 2, No. 5. (1 May 2006), e47.
    by Zhihua Zhang, Changning Liu, Geir Skogerbø, Xiaopeng Zhu, Hongchao Lu, Lan Chen, Baochen Shi, Yong Zhang, Jie Wang, Tao Wu, Runsheng Chen
    posted to bioinformatics network tfs by kengg on 2007-12-25 03:42:43 as ** along with 2 people ccots aswin
  • Getting Started in Probabilistic Graphical Models
    PLoS Computational Biology, Vol. 3, No. 12. (1 December 2007), e252.
    by Edoardo M Airoldi
    posted to bioinformatics network by kengg on 2007-12-25 03:17:46 as ** along with 6 people Yanno axelon ryanraaum heliopais mingzhi Ema
  • Modulation of phospholipid signaling by GLABRA2 in root-hair pattern formation.
    Science, Vol. 300, No. 5624. (30 May 2003), pp. 1427-1430.
    by Y Ohashi, A Oka, R Rodrigues-Pousada, M Possenti, I Ruberti, G Morelli, T Aoyama
    posted to network root tfs trichome by kengg on 2007-12-06 15:03:33 as **
  • Meta-Analysis of Drosophila Circadian Microarray Studies Identifies a Novel Set of Rhythmically Expressed Genes
    PLoS Computational Biology, Vol. 3, No. 11. (1 November 2007), e208.
    by Kevin P Keegan, Suraj Pradhan, Ji-Ping Wang, Ravi Allada
    posted to bioinformatics circadian drosophila microarray network by kengg on 2007-11-29 22:14:56 as **
  • Coordinate Gene Regulation during Hematopoiesis Is Related to Genomic Organization
    PLoS Biology, Vol. 5, No. 11. (1 November 2007), e309.
    by Steven T Kosak, David Scalzo, Sam V Alworth, Fusheng Li, Stephanie Palmer, Tariq Enver, James S Lee, Mark Groudine
    posted to genome-wide network by kengg on 2007-11-29 15:52:32 as ** along with 2 people sebastien_vigneau oelemento
  • Gene expression profiling of single epidermal, basal and trichome cells of Arabidopsis thaliana.
    J Plant Physiol (12 November 2007)
    by Elke Lieckfeldt, Ulrike Simon-Rosin, Frank Kose, Daniela Zoeller, Martin Schliep, Joachim Fisahn
    posted to network trichome by kengg on 2007-11-26 13:51:20 as **
  • Identification of coexpressed gene clusters in a comparative analysis of transcriptome and proteome in mouse tissues
    PNAS, Vol. 102, No. 24. (14 June 2005), pp. 8621-8626.
    by T Mijalski, A Harder, T Halder, M Kersten, M Horsch, TM Strom, HV Liebscher, F Lottspeich, Hrabe M de Angelis, J Beckers
    posted to bioinformatics microarray network by kengg on 2007-11-21 03:45:56 as ** along with 1 person JeffR100
  • ATTED-II: a database of co-expressed genes and cis elements for identifying co-regulated gene groups in Arabidopsis.
    Nucleic Acids Res, Vol. 35, No. Database issue. (January 2007)
    by T Obayashi, K Kinoshita, K Nakai, M Shibaoka, S Hayashi, M Saeki, D Shibata, K Saito, H Ohta
    posted to bioinformatics microarray network by kengg on 2007-11-21 03:26:44 as **
  • Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets.
    Proc Natl Acad Sci U S A, Vol. 102, No. 24. (14 June 2005), pp. 8633-8638.
    by S Persson, H Wei, J Milne, GP Page, CR Somerville
    posted to coexpression microarray network by kengg on 2007-11-20 03:11:05 as ** along with 1 person talponer
  • A Gene Expression Map of the Arabidopsis Root
    Science, Vol. 302, No. 5652. (12 December 2003), pp. 1956-1960.
    by Kenneth Birnbaum, Dennis E Shasha, Jean Y Wang, Jee W Jung, Georgina M Lambert, David W Galbraith, Philip N Benfey
    posted to genome-wide network root by kengg on 2007-11-01 20:36:10 as ** along with 2 people and 2 groups sstoma cpib_list VirtualPlants CPIB
  • Cell type–specific expression profiling in plants via cell sorting of protoplasts from fluorescent reporter lines
    Nature Methods, Vol. 2, No. 8., pp. 615-619.
    by Kenneth Birnbaum, Jee W Jung, Jean Y Wang, Georgina M Lambert, John A Hirst, David W Galbraith, Philip N Benfey
    posted to genome-wide method network root by kengg on 2007-11-01 20:30:27 as **
  • Participation of the Arabidopsis bHLH Factor GL3 in Trichome Initiation Regulatory Events.
    Plant Physiol (20 September 2007)
    by Kengo Morohashi, Mingzhe Zhao, Manli Yang, Betsy Read, Alan Lloyd, Rebecca Lamb, Erich Grotewold
    posted to bhlh chip network tfs trichome by kengg on 2007-10-23 21:33:52 as **
  • Arabidopsis transcription factors: genome-wide comparative analysis among eukaryotes.
    Science, Vol. 290, No. 5499. (15 December 2000), pp. 2105-2110.
    by JL Riechmann, J Heard, G Martin, L Reuber, C Jiang, J Keddie, L Adam, O Pineda, OJ Ratcliffe, RR Samaha, R Creelman, M Pilgrim, P Broun, JZ Zhang, D Ghandehari, BK Sherman, G Yu
    posted to arabidopsis genome-wide network rna tfs by kengg on 2007-07-24 21:00:56 as ** along with 4 people and 2 groups hplatero tny nickluscombe Hummel EBI-regulation Plantandetc
  • A core transcriptional network for early mesoderm development in Drosophila melanogaster.
    Genes Dev, Vol. 21, No. 4. (15 February 2007), pp. 436-449.
    by T Sandmann, C Girardot, M Brehme, W Tongprasit, V Stolc, EE Furlong
    posted to chip-chip drosophila network tfs by kengg on 2007-07-20 03:09:55 as ** along with 4 people and 2 groups roys brant dpollard gsrats EisenLab Plantandetc
  • Integration of Genome and Chromatin Structure with Gene Expression Profiles To Predict c-MYC Recognition Site Binding and Function.
    PLoS Comput Biol, Vol. 3, No. 4. (6 April 2007)
    by Yili Chen, Thomas W W Blackwell, Ji Chen, Jing Gao, Angel W W Lee, David J J States
    posted to bioinformatics chip network tfs by kengg on 2007-07-20 03:07:26 as ** along with 1 person and 2 groups zwang Bioinformatics Plantandetc
  • Whole-genome ChIP-chip analysis of Dorsal, Twist, and Snail suggests integration of diverse patterning processes in the Drosophila embryo.
    Genes Dev, Vol. 21, No. 4. (15 February 2007), pp. 385-390.
    by J Zeitlinger, RP Zinzen, A Stark, M Kellis, H Zhang, RA Young, M Levine
    posted to chip drosophila genome-wide network by kengg on 2007-07-18 02:53:50 as ** along with 6 people and 2 groups dpollard johncumbers gsrats ghattem jtomasch Stew EisenLab Plantandetc
  • Elucidation of gene-to-gene and metabolite-to-gene networks in arabidopsis by integration of metabolomics and transcriptomics.
    J Biol Chem, Vol. 280, No. 27. (8 July 2005), pp. 25590-25595.
    by MY Hirai, M Klein, Y Fujikawa, M Yano, DB Goodenowe, Y Yamazaki, S Kanaya, Y Nakamura, M Kitayama, H Suzuki, N Sakurai, D Shibata, J Tokuhisa, M Reichelt, J Gershenzon, J Papenbrock, K Saito
    posted to arabidopsis metabolite network tfs by kengg on 2007-07-14 16:14:37 as ** along with 1 group Plantandetc
  • Identification of plant promoter constituents by analysis of local distribution of short sequences
    BMC Genomics, Vol. 8 (08 March 2007), 67.
    by Yoshiharu Y Yamamoto, Hiroyuki Ichida, Minami Matsui, Junichi Obokata, Teshuya Sakurai, Masakazu Satou, Motoaki Seki, Kazuo Shinozaki, Tomoko Abe
    posted to arabidopsis bioinformatics network tfs by kengg on 2007-06-27 14:39:31 as ** along with 5 people and 1 group xwbcn saru byy Jporci natstreet Plantandetc
  • Modeling Networks of Coupled Enzymatic Reactions Using the Total Quasi-Steady State Approximation
    PLoS Computational Biology, Vol. 3, No. 3. (1 March 2007), e45.
    by Andrea Ciliberto, Fabrizio Capuani, John J Tyson
    posted to bioinformatics metabolite network by kengg on 2007-03-20 18:36:37 as ** along with 1 group Plantandetc
  • Robustness Can Evolve Gradually in Complex Regulatory Gene Networks with Varying Topology
    PLoS Computational Biology, Vol. 3, No. 2. (1 February 2007), e15.
    by Stefano Ciliberti, Olivier C Martin, Andreas Wagner
    posted to bioinformatics network tfs by kengg on 2007-03-15 20:24:57 as ** along with 15 people and 5 groups phoenixzxl eldan ccots indigoviolet emilyhare malcook entropy nickluscombe aswin dolhuis timflutre grahamc shigepong kynn carneiro EisenLab EBI-regulation SNE ParkinsonLab_at_MaRS Plantandetc
  • The Regulatory Code for Transcriptional Response Diversity and Its Relation to Genome Structural Properties in A. thaliana
    PLoS Genetics, Vol. 3, No. 2. (1 February 2007), e11.
    by Dirk Walther, Roman Brunnemann, Joachim Selbig
    posted to arabidopsis network tfs by kengg on 2007-03-12 19:00:12 as ** along with 5 people and 2 groups Borelli indigoviolet saru braingrind byy EisenLab Plantandetc
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