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kengg's coexpression [27 articles]

当前文献位于 kengg's 文献库 标签分类为 coexpression. You can also see everyone's coexpression.
  • Comprehensive Flavonol Profiling and Transcriptome Coexpression Analysis Leading to Decoding Gene-Metabolite Correlations in Arabidopsis
    Plant Cell (2 September 2008), tpc.108.058040.
    by Keiko Yonekura-Sakakibara, Takayuki Tohge, Fumio Matsuda, Ryo Nakabayashi, Hiromitsu Takayama, Rie Niida, Akiko Watanabe-Takahashi, Eri Inoue, Kazuki Saito
    posted to metabolite coexpression bioinformatics by kengg on 2008-09-06 02:37:46 as **
  • Geometric Interpretation of Gene Coexpression Network Analysis
    PLoS Comput Biol, Vol. 4, No. 8. (2008), e1000117.
    by Steve Horvath, Jun Dong
    posted to bioinformatics coexpression network statics by kengg on 2008-08-23 23:08:15 as ** along with 12 people pengchy nolodie druvus aramesh2 roys Ema tmmurali Borelli Totobox AbnerCYH davidchavalarias caseybrown
  • CressExpress: A tool for large-scale mining of expression data from Arabidopsis thaliana.
    Plant physiology (8 May 2008)
    by Vinodh Srinivasasainagendra, Grier Page, Tapan Mehta, Issa Coulibaly, Ann E E Loraine
    posted to bioinformatics coexpression by kengg on 2008-07-13 02:54:49 as ** along with 2 people imtechnology talponer
  • Integrating large-scale functional genomic data to dissect the complexity of yeast regulatory networks.
    Nature genetics (15 June 2008)
    by Jun Zhu, Bin Zhang, Erin N N Smith, Becky Drees, Rachel B B Brem, Leonid Kruglyak, Roger E E Bumgarner, Eric E E Schadt
    posted to coexpression network systems tfs yeast by kengg on 2008-06-19 21:54:39 as ** along with 10 people realzhang maralena ptrobajo tmmurali jyuh roys marck caseybrown djkt srp33
  • Systems biology: Merging data means more powerful networks
    Nat Rev Genet, Vol. 9, No. 7. (July 2008), pp. 501-501.
    by Patrick Goymer
    posted to coexpression network review systems by kengg on 2008-06-19 21:51:05 as ** along with 3 people marck reyez renatomilani
  • Hierarchical structure and the prediction of missing links in networks
    Nature, Vol. 453, No. 7191., pp. 98-101.
    by Aaron Clauset, Cristopher Moore, MEJ Newman
    posted to bioinformatics coexpression network by kengg on 2008-05-30 16:02:56 as ** along with 37 people kubyaddi pbull gtgt15 Ema jago cmor balicea jjray soramame_0518 deanmalmgren briordan hryk tny AbnerCYH cactus tmmurali akshat bryanhughes gagliol margaritis jyuh craigwilson06 cmmorel eyliu markusd elsantosneto pinney i-stevenson fbaroni nedwards apwesolowski Borelli ptrobajo dpf rds lfriedl sen_cheng
  • Gene connectivity, function, and sequence conservation: predictions from modular yeast co-expression networks.
    BMC Genomics, Vol. 7 (2006)
    by MR Carlson, B Zhang, Z Fang, PS Mischel, S Horvath, SF Nelson
    posted to bioinformatics coexpression by kengg on 2008-05-24 03:19:51 as ** along with 2 people and 1 group jeremymiller xwbcn GeschwindLab
  • Gene co-expression network topology provides a framework for molecular characterization of cellular state
    Bioinformatics, Vol. 20, No. 14. (22 September 2004), pp. 2242-2250.
    by Scott L Carter, Christian M Brechbuhler, Michael Griffin, Andrew T Bond
    posted to bioinformatics coexpression by kengg on 2008-05-24 03:18:32 as ** along with 1 person nolodie
  • Annotating Genes of Known and Unknown Function by Large-Scale Coexpression Analysis
    Plant Physiol., Vol. 147, No. 1. (1 May 2008), pp. 41-57.
    by Kevin Horan, Charles Jang, Julia Bailey-Serres, Ron Mittler, Christian Shelton, Jeff F Harper, Jian-Kang Zhu, John C Cushman, Martin Gollery, Thomas Girke
    posted to bioinformatics coexpression by kengg on 2008-04-29 02:36:36 as ** along with 1 person jyuh
  • Network motif-based identification of transcription factor-target gene relationships by integrating multi-source biological data
    BMC Bioinformatics, Vol. 9, No. 1. (2008)
    by Yuji Zhang, Jianhua Xuan, Benildo, Robert Clarke, Habtom Ressom
    posted to bioinformatics coexpression network tfs by kengg on 2008-04-24 01:35:28 as ** along with 8 people natstreet druvus heliopais robertvandenberg dquest bootsy bertelsen jyuh
  • Extraction of correlated gene clusters from multiple genomic data by generalized kernel canonical correlation analysis.
    Bioinformatics, Vol. 19 Suppl 1 (2003)
    by Y Yamanishi, JP Vert, A Nakaya, M Kanehisa
    posted to bioinformatics coexpression network by kengg on 2008-04-17 15:51:29 as ** along with 1 person bioinfo
  • Coexpression, coregulation, and cofunctionality of neighboring genes in eukaryotic genomes.
    Genomics, Vol. 91, No. 3. (March 2008), pp. 243-248.
    by P Michalak
    posted to arabidopsis coexpression review by kengg on 2008-03-13 14:17:19 as ** along with 2 people pengchy alhufton
  • A predicted interactome for Arabidopsis.
    Plant Physiol, Vol. 145, No. 2. (October 2007), pp. 317-329.
    by J Geisler-Lee, N O'Toole, R Ammar, NJ Provart, AH Millar, M Geisler
    posted to coexpression high-throughput interaction by kengg on 2008-03-12 20:28:24 as ** along with 1 person cerca
  • Identification of a flavonol 7-O-rhamnosyltransferase gene determining flavonoid pattern in Arabidopsis by transcriptome coexpression analysis and reverse genetics.
    J Biol Chem, Vol. 282, No. 20. (18 May 2007), pp. 14932-14941.
    by K Yonekura-Sakakibara, T Tohge, R Niida, K Saito
    posted to coexpression metabolite by kengg on 2008-03-12 18:01:16 as **
  • Large-scale Cis-element Detection by Analysis of Correlated Expression and Sequence Conservation between Arabidopsis and Brassica oleracea.
    Plant Physiol (6 October 2006)
    by Georg Haberer, Michael T T Mader, Peter Kosarev, Manuel Spannagl, Li Yang, Klaus Fx F Mayer
    posted to bioinformatics brassica coexpression by kengg on 2008-03-12 17:39:49 as ** along with 4 people and 1 group dpollard xwbcn nklee xili03 EisenLab
  • Coexpression of Neighboring Genes in the Genome of Arabidopsis thaliana
    Genome Res., Vol. 14, No. 6. (1 June 2004), pp. 1060-1067.
    by Elizabeth J Williams, Dianna J Bowles
    posted to arabidopsis bioinformatics coexpression by kengg on 2008-03-12 17:19:33 as ** along with 2 people JeffR100 olympos
  • Genome-wide expression profiling of the Arabidopsis female gametophyte identifies families of small, secreted proteins.
    PLoS Genet, Vol. 3, No. 10. (October 2007), pp. 1848-1861.
    by MW Jones-Rhoades, JO Borevitz, D Preuss
    posted to bioinformatics coexpression meiosis network by kengg on 2008-03-08 04:20:15 as **
  • Computing topological parameters of biological networks.
    Bioinformatics (15 November 2007)
    by Yassen Assenov, Fidel Ramírez, Sven-Eric E Schelhorn, Thomas Lengauer, Mario Albrecht
    posted to bioinformatics coexpression by kengg on 2008-02-03 03:33:15 as ** along with 5 people jyuh jfr grahamc mclarenv frohike
  • Topological and functional discovery in a gene coexpression meta-network of gastric cancer.
    Cancer Res, Vol. 66, No. 1. (1 January 2006), pp. 232-241.
    by A Aggarwal, DL Guo, Y Hoshida, ST Yuen, KM Chu, S So, A Boussioutas, X Chen, D Bowtell, H Aburatani, SY Leung, P Tan
    posted to bioinformatics coexpression systems by kengg on 2008-02-03 03:21:47 as ** along with 1 person jfr
  • Network-based classification of breast cancer metastasis
    Mol Syst Biol, Vol. 3 (16 October 2007)
    by Han-Yu Chuang, Eunjung Lee, Yu-Tsueng Liu, Doheon Lee, Trey Ideker
    posted to bioinformatics coexpression network systems by kengg on 2008-02-03 02:58:04 as ** along with 18 people and 2 groups winterschlaefer isimpson ihpark bertelsen jfr frohike mikaelhuss cjeans zwang cerami abhattac shikin oelemento roys ptrobajo dap5087 saman_vp verdicchio Bioinformatics GeneGo
  • Understanding Network Concepts in Modules
    BMC Systems Biology, Vol. 1, No. 1. (2007)
    by Jun Dong, Steve Horvath
    posted to bioinformatics coexpression network by kengg on 2008-01-17 21:30:09 as ** along with 5 people and 1 group pengchy jfr grahamc natstreet kaihsyn Bioinformatics
  • Defining clusters from a hierarchical cluster tree: the Dynamic Tree Cut library for R
    Bioinformatics (16 November 2007), btm563.
    by Peter Langfelder, Bin Zhang, Steve Horvath
    posted to bioinformatics coexpression network by kengg on 2008-01-16 22:12:33 as **
  • A general framework for weighted gene co-expression network analysis.
    Stat Appl Genet Mol Biol, Vol. 4, No. 1. (2005)
    by B Zhang, S Horvath
    posted to bioinformatics coexpression network by kengg on 2008-01-16 21:53:52 as ** along with 4 people and 1 group pengchy jeremymiller natstreet jo_davies GeschwindLab
  • Integrating Genetic and Network Analysis to Characterize Genes Related to Mouse Weight.
    PLoS Genet, Vol. 2, No. 8. (18 August 2006)
    by Anatole Ghazalpour, Sudheer Doss, Bin Zhang, Susanna Wang, Christopher Plaisier, Ruth Castellanos, Alec Brozell, Eric E E Schadt, Thomas A A Drake, Aldons J J Lusis, Steve Horvath
    posted to bioinformatics coexpression network by kengg on 2008-01-16 21:53:34 as ** along with 6 people and 1 group Maelys koller giovanni jeremymiller natstreet jo_davies GeschwindLab
  • Network neighborhood analysis with the multi-node topological overlap measure.
    Bioinformatics, Vol. 23, No. 2. (15 January 2007), pp. 222-231.
    by A Li, S Horvath
    posted to bioinformatics coexpression network by kengg on 2008-01-16 21:53:05 as ** along with 1 person and 1 group jeremymiller GeschwindLab
  • Conservation and evolution of gene coexpression networks in human and chimpanzee brains
    PNAS, Vol. 103, No. 47. (21 November 2006), pp. 17973-17978.
    by Michael C Oldham, Steve Horvath, Daniel H Geschwind
    posted to bioinformatics coexpression network by kengg on 2008-01-16 21:51:21 as ** along with 8 people and 2 groups pengchy balicea adepace EsepBib jeremymiller cckan nosada17 giovanni EisenLab GeschwindLab
  • Identification of genes required for cellulose synthesis by regression analysis of public microarray data sets.
    Proc Natl Acad Sci U S A, Vol. 102, No. 24. (14 June 2005), pp. 8633-8638.
    by S Persson, H Wei, J Milne, GP Page, CR Somerville
    posted to coexpression microarray network by kengg on 2007-11-20 03:11:05 as ** along with 1 person talponer
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