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karfunkel's library [150 articles]

最近录入 karfunkel's 文献库.
  • Dinucleotide relative abundance extremes: a genomic signature.
    Trends in genetics : TIG, Vol. 11, No. 7. (July 1995), pp. 283-290.
    by S Karlin, C Burge
    posted to hgt by karfunkel on 2008-06-29 21:55:22 as **
  • What Drives Codon Choices in Human Genes?
    Journal of Molecular Biology, Vol. 262, No. 4. (4 October 1996), pp. 459-472.
    by Samuel Karlin, Jan Mrazek
    posted to hgt by karfunkel on 2008-06-29 17:06:20 as ** along with 2 people bpcusack nagendraproj
  • Compositional constraints and genome evolution.
    Journal of molecular evolution, Vol. 24, No. 1-2. (1986), pp. 1-11.
    by G Bernardi, G Bernardi
    posted to hgt by karfunkel on 2008-06-29 16:40:40 as ** along with 1 person balicea
  • Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system
    Journal of Molecular Biology, Vol. 151, No. 3. (25 September 1981), pp. 389-409.
    by Toshimichi Ikemura
    posted to hgt by karfunkel on 2008-06-29 16:32:00 as ** along with 1 person operon
  • Codon frequencies in 119 individual genes confirm consistent choices of degenerate bases according to genome type.
    Nucleic acids research, Vol. 8, No. 9. (10 May 1980), pp. 1893-1912.
    by R Grantham, C Gautier, M Gouy
    posted to hgt by karfunkel on 2008-06-29 16:20:45 as **
  • Gene amelioration demonstrated: the journey of nascent genes in bacteria.
    Genome / National Research Council Canada = Génome / Conseil national de recherches Canada, Vol. 51, No. 2. (February 2008), pp. 164-168.
    by PR Marri, GB Golding
    posted to hgt by karfunkel on 2008-06-29 15:11:22 as **
  • Differentiation of regions with atypical oligonucleotide composition in bacterial genomes
    BMC Bioinformatics, Vol. 6, No. 1. (2005)
    by Oleg Reva, Burkhard Tummler
    posted to hgt by karfunkel on 2008-06-27 15:28:21 as **
  • Estimating the extent of horizontal gene transfer in metagenomic sequences
    BMC Genomics, Vol. 9, No. 1. (2008)
    by Javier Tamames, Andres Moya
    posted to hgt by karfunkel on 2008-06-27 14:27:39 as ** along with 1 person neils
  • Microbe-induced cytoplasmic incompatibility as a mechanism for introducing transgenes into arthropod populations
    Insect Molecular Biology, Vol. 8, No. 2. (1999), pp. 243-255.
    by M Turelli, AA Hoffmann
    posted to hgt by karfunkel on 2008-06-27 13:15:47 as **
  • Wolbachia variability and host effects on crossing type in Culex mosquitoes
    Nature, Vol. 436, No. 7048. (July 2005), pp. 257-260.
    by Steven P Sinkins, Thomas Walker, Amy R Lynd, Andrew R Steven, Ben L Makepeace, Charles, Julian Parkhill
    posted to hgt by karfunkel on 2008-06-27 12:56:53 as ** along with 1 person operon
  • Host genome surveillance for retrotransposons by transposon-derived proteins
    Nature (19 December 2007)
    by Hugh P Cam, Ken-Ichi Noma, Hirotaka Ebina, Henry L Levin, Shiv IS Grewal
    posted to hgt by karfunkel on 2008-06-27 11:55:31 as ** along with 6 people and 1 group operon sebastien_vigneau timflutre stajich biomcgary rschulz Berkeley Mycology
  • The Mammalian Epigenome
    Cell, Vol. 128, No. 4. (23 February 2007), pp. 669-681.
    by Bradley E Bernstein, Alexander Meissner, Eric S Lander
    posted to hgt by karfunkel on 2008-06-27 11:40:00 as ** along with 3 people jasonflannick jyuh slevy03
  • Transformation Proteins and DNA Uptake Localize to the Cell Poles in Bacillus subtilis
    Cell, Vol. 122, No. 1. (15 July 2005), pp. 59-71.
    by Jeanette Hahn, Berenike Maier, Bert J Haijema, Michael Sheetz, David Dubnau
    posted to hgt by karfunkel on 2008-06-24 09:51:27 as ** along with 1 person treangen
  • DNA uptake during bacterial transformation.
    Nat Rev Microbiol, Vol. 2, No. 3. (March 2004), pp. 241-249.
    by I Chen, D Dubnau
    posted to hgt by karfunkel on 2008-06-24 09:20:25 as ** along with 3 people dayjm nuke2005 treangen
  • Studies on inheritance of drug resistance between Shigella strains and Escherichia coli strains
    Nippon Iji Shimpo, Vol. 1861 (1959), pp. 34-46.
    by K Ochiai, T Yamanaka, K Kimura, O Sawada
    posted to hgt by karfunkel on 2008-06-17 10:08:57 as **
  • Structure of bacterial tubulin BtubA/B: evidence for horizontal gene transfer.
    Proc Natl Acad Sci U S A, Vol. 102, No. 26. (28 June 2005), pp. 9170-9175.
    by D Schlieper, MA Oliva, JM Andreu, J Löwe
    posted to hgt by karfunkel on 2008-05-30 09:41:35 as ** along with 1 person and 2 groups barry structural_bioinformatics Bioinformatics
  • RE-EVALUATING PROKARYOTIC SPECIES
    Nat Rev Micro, Vol. 3, No. 9. (2005), pp. 733-739.
    by Dirk Gevers, Frederick M Cohan, Jeffrey G Lawrence, Brian G Spratt, Tom Coenye, Edward J Feil, Erko Stackebrandt, Yves V de Peer, Peter Vandamme, Fabiano L Thompson, Jean Swings
    posted to hgt by karfunkel on 2008-05-29 14:34:04 as ** along with 1 person jmeppley
  • HORIZONTAL GENE TRANSFER: Analysing incompatibility [mdash] Wolbachia on the couch
    Nature Reviews Microbiology, Vol. 3, No. 9. (01 September 2005), pp. 667-667.
    by Shannon Amoils
    posted to hgt by karfunkel on 2008-05-29 14:32:51 as **
  • HORIZONTAL GENE TRANSFER: Coordinated uptake
    Nature Reviews Microbiology, Vol. 3, No. 9. (01 September 2005), pp. 667-667.
    by Sheilagh Molloy
    posted to hgt by karfunkel on 2008-05-29 14:31:46 as **
  • HORIZONTAL GENE TRANSFER: A gift from afar...
    Nature Reviews Microbiology, Vol. 3, No. 9. (01 September 2005), pp. 668-668.
    by David O'Connell
    posted to hgt by karfunkel on 2008-05-29 14:30:41 as **
  • STUDYING PLASMID HORIZONTAL TRANSFER IN SITU: A CRITICAL REVIEW
    Nat Rev Micro, Vol. 3, No. 9. (2005), pp. 700-710.
    by Soren J Sorensen, Mark Bailey, Lars H Hansen, Niels Kroer, Stefan Wuertz
    posted to hgt by karfunkel on 2008-05-29 14:29:16 as ** along with 1 person and 1 group vwchan beta
  • MECHANISMS OF, AND BARRIERS TO, HORIZONTAL GENE TRANSFER BETWEEN BACTERIA
    Nat Rev Micro, Vol. 3, No. 9. (2005), pp. 711-721.
    by Christopher M Thomas, Kaare M Nielsen
    posted to hgt by karfunkel on 2008-05-29 14:27:51 as ** along with 1 person jmeppley
  • MOBILE GENETIC ELEMENTS: THE AGENTS OF OPEN SOURCE EVOLUTION
    Nat Rev Micro, Vol. 3, No. 9. (2005), pp. 722-732.
    by Laura S Frost, Raphael Leplae, Anne O Summers, Ariane Toussaint
    posted to hgt by karfunkel on 2008-05-29 14:26:39 as ** along with 1 person cdallett
  • Mobile DNA in obligate intracellular bacteria
    Nature Reviews Microbiology, Vol. 3, No. 9. (01 September 2005), pp. 688-699.
    by Seth R Bordenstein, William S Reznikoff
    posted to hgt by karfunkel on 2008-05-29 14:25:09 as ** along with 1 person operon
  • Foreword: Horizontal gene transfer: perspectives at a crossroads of scientific disciplines
    Nature Reviews Microbiology, Vol. 3, No. 9. (01 September 2005), pp. 675-678.
    by Barth F Smets, Tamar Barkay
    posted to hgt by karfunkel on 2008-05-10 14:04:23 as **
  • Phylogenetic identification of lateral genetic transfer events.
    BMC Evol Biol, Vol. 6 (2006)
    by RG Beiko, N Hamilton
    posted to hgt by karfunkel on 2008-04-21 13:52:38 as ** along with 1 person operon
  • Structural analysis of DNA sequence: evidence for lateral gene transfer in Thermotoga maritima.
    Nucleic Acids Res, Vol. 28, No. 3. (1 February 2000), pp. 706-709.
    by P Worning, LJ Jensen, KE Nelson, S Brunak, DW Ussery
    posted to hgt by karfunkel on 2008-04-10 15:03:00 as ** along with 1 person larsjuhljensen
  • Evidence for lateral gene transfer between Archaea and bacteria from genome sequence of Thermotoga maritima.
    Nature, Vol. 399, No. 6734. (27 May 1999), pp. 323-329.
    by KE Nelson, RA Clayton, SR Gill, ML Gwinn, RJ Dodson, DH Haft, EK Hickey, JD Peterson, WC Nelson, KA Ketchum, L McDonald, TR Utterback, JA Malek, KD Linher, MM Garrett, AM Stewart, MD Cotton, MS Pratt, CA Phillips, D Richardson, J Heidelberg, GG Sutton, RD Fleischmann, JA Eisen, O White, SL Salzberg, HO Smith, JC Venter, CM Fraser
    posted to hgt by karfunkel on 2008-04-10 14:58:29 as ** along with 2 people and 2 groups ana jmeppley structural_bioinformatics Bioinformatics
  • Comparative Genomics of the Archaea (Euryarchaeota): Evolution of Conserved Protein Families, the Stable Core, and the Variable Shell
    Genome Res., Vol. 9, No. 7. (1 July 1999), pp. 608-628.
    by Kira S Makarova, L Aravind, Michael Y Galperin, Nick V Grishin, Roman L Tatusov, Yuri I Wolf, Eugene V Koonin
    posted to hgt by karfunkel on 2008-04-10 14:50:00 as ** along with 1 person operon
  • Codon usages in different gene classes of the Escherichia coli genome
    Molecular Microbiology, Vol. 29, No. 6. (1998), pp. 1341-1355.
    by Samuel Karlin, Jan Mrazek, Allan M Campbell
    posted to hgt by karfunkel on 2008-04-10 14:36:47 as **
  • Comparison of archaeal and bacterial genomes: computer analysis of protein sequences predicts novel functions and suggests a chimeric origin for the archaea
    Molecular Microbiology, Vol. 25, No. 04. (1997), pp. 619-637.
    by Eugene V Koonin, Arcady R Mushegian, Michael Y Galperin, Roland D Walker
    posted to no-tag by karfunkel on 2008-04-10 14:29:32 as **
  • How to Interpret an Anonymous Bacterial Genome: Machine Learning Approach to Gene Identification
    Genome Res., Vol. 8, No. 11. (1 November 1998), pp. 1154-1171.
    by William S Hayes, Mark Borodovsky
    posted to hgt by karfunkel on 2008-04-10 14:00:40 as ** along with 1 person wenhan
  • The large-scale organization of metabolic networks.
    Nature, Vol. 407, No. 6804. (5 October 2000), pp. 651-654.
    by H Jeong, B Tombor, R Albert, ZN Oltvai, AL Barabási
    posted to no-tag by karfunkel on 2008-03-21 14:22:57 as ** along with 21 people and 2 groups shikin camster snuppepuppan jpmague mague alexisgallagher bjorns Borelli shivaram lfriedl cmmorel alexg Shirakawa ddahlem gcalda grahamc jrbanga Evangelia shung pmendes stefanoallesina dbk-lab kdl
  • On surrogate methods for detecting lateral gene transfer.
    FEMS Microbiol Lett, Vol. 201, No. 2. (24 July 2001), pp. 187-191.
    by MA Ragan
    posted to amelioration hgt by karfunkel on 2008-01-28 12:34:07 as ** along with 1 person treangen
  • The power of phylogenetic approaches to detect horizontally transferred genes
    BMC Evolutionary Biology, Vol. 7, No. 1. (2007)
    by Maria Poptsova, Peter J Gogarten
    posted to hgt by karfunkel on 2008-01-14 14:30:30 as ** along with 1 person operon
  • Horizontal gene transfer, genome innovation and evolution
    Nature Reviews Microbiology, Vol. 3, No. 9. (01 September 2005), pp. 679-687.
    by Peter J Gogarten, Jeffrey P Townsend
    posted to hgt by karfunkel on 2008-01-14 14:22:40 as ** along with 6 people and 1 group matzke jwortman imouthesmp ryang dbikard kinestetika microbiology_nijmegen
  • Gene transfer: gene swapping craze reaches eukaryotes.
    Curr Biol, Vol. 13, No. 2. (21 January 2003)
    by JP Gogarten
    posted to hgt by karfunkel on 2008-01-14 14:19:41 as ** along with 1 person and 1 group vwchan beta
  • Lateral gene transfer in eukaryotes
    Cellular and Molecular Life Sciences (CMLS), Vol. 62, No. 11. (1 June 2005), pp. 1182-1197.
    by JO Andersson
    posted to hgt by karfunkel on 2008-01-14 13:54:02 as **
  • Horizontal gene transfer: the path to maturity
    Molecular Microbiology, Vol. 50, No. 3. (2003), pp. 725-727.
    by Eugene V Koonin
    posted to hgt by karfunkel on 2008-01-14 13:45:11 as ** along with 1 person treangen
  • Strand compositional asymmetry in bacterial and large viral genomes
    Proceedings of the National Academy of Sciences, Vol. 95, No. 7. (31 March 1998), pp. 3720-3725.
    by Jan Mrazek, Samuel Karlin
    posted to hgt by karfunkel on 2008-01-11 14:31:48 as **
  • Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes.
    Proc Natl Acad Sci U S A, Vol. 87, No. 6. (March 1990), pp. 2264-2268.
    by S Karlin, SF Altschul
    posted to hgt by karfunkel on 2008-01-11 14:29:48 as ** along with 7 people and 1 group kaspermunch AaronDarling rabio timflutre cjeans siebertm adijr Bioinformatics
  • Isochores merit the prefix `iso'
    Computational Biology and Chemistry, Vol. 27, No. 1. (February 2003), pp. 5-10.
    by Wentian Li, Pedro Bernaola-Galvan, Pedro Carpena, Jose L Oliver
    posted to hgt by karfunkel on 2008-01-11 14:26:51 as **
  • Base compositional structure of genomes
    Genomics, Vol. 13, No. 4. (August 1992), pp. 1056-1064.
    by James W Fickett, David C Torney, David R Wolf
    posted to hgt by karfunkel on 2008-01-11 14:23:15 as **
  • Pervasive properties of the genomic signature
    BMC Genomics, Vol. 3, No. 1. (2002)
    by Robert Jernigan, Robert Baran
    posted to hgt by karfunkel on 2008-01-11 14:19:20 as **
  • A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes
    Genome Biology, Vol. 2, No. 4. (2001), pp. research0010.1-research0010.13.
    by Robin Knight, Stephen Freeland, Laura Landweber
    posted to hgt by karfunkel on 2008-01-11 13:54:25 as ** along with 2 people nagendraproj nagendranow
  • The reach of the genome signature in prokaryotes
    BMC Evolutionary Biology, Vol. 6 (13 October 2006), 84.
    by Mark WJ van Passel, Eiko E Kuramae, Angela CM Luyf, Aldert Bart, Teun Boekhout
    posted to hgt by karfunkel on 2008-01-11 13:51:12 as ** along with 2 people operon gelack
  • Compositional biases of bacterial genomes and evolutionary implications.
    J Bacteriol, Vol. 179, No. 12. (June 1997), pp. 3899-3913.
    by S Karlin, J Mrázek, AM Campbell
    posted to hgt by karfunkel on 2008-01-11 13:21:39 as ** along with 1 person bluto
  • Dinucleotide relative abundance extremes: a genomic signature
    Trends in Genetics, Vol. 11, No. 7. (July 1995), pp. 283-290.
    by Samuel Kariin, Chris Burge
    posted to hgt by karfunkel on 2008-01-11 13:14:39 as ** along with 1 person jmeppley
  • Genes from Nine Genomes Are Separated into Their Organisms in the Dinucleotide Composition Space
    DNA Res, Vol. 5, No. 5. (1 January 1998), pp. 251-259.
    by Hiroshi Nakashima, Motonori Ota, Ken Nishikawa, Tatsuo Ooi
    posted to hgt by karfunkel on 2008-01-11 12:57:52 as ** along with 1 person bluto
  • Di.erences in Dinucleotide Frequencies of Human, Yeast, and Escherichia coli Genes
    DNA Res, Vol. 4, No. 3. (1 January 1997), pp. 185-192.
    by Hiroshi Nakashima, Ken Nishikawa, Tatsuo Ooi
    posted to hgt by karfunkel on 2008-01-11 12:54:25 as **
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