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jjray's transcription [35 articles]

当前文献位于 jjray's 文献库 标签分类为 transcription. You can also see everyone's transcription.
  • The mean and noise of stochastic gene transcription
    Journal of Theoretical Biology, Vol. 253, No. 2. (21 July 2008), pp. 271-280.
    by Moxun Tang
    posted to transcription stochastic noise mathematical_model gene_expression by jjray on 2008-06-30 16:19:47 as ** along with 1 person balicea
  • Nucleosome Retention and the Stochastic Nature of Promoter Chromatin Remodeling for Transcription
    Cell, Vol. 133, No. 4. (16 May 2008), pp. 716-726.
    by Hinrich Boeger, Joachim Griesenbeck, Roger D Kornberg
    posted to transcription stochastic nucleosome mathematical_model gillespie_algorithm gene_expression eukaryote chromatin by jjray on 2008-05-16 20:34:56 as **
  • A Kinetic Model of Transcription Initiation by RNA Polymerase
    Journal of Molecular Biology, Vol. 378, No. 3. (2 May 2008), pp. 520-529.
    by Xiao-Chuan Xue, Fei Liu, Zhong-Can Ou-Yang
    posted to transcription promoter mathematical_model gibbs energy biophysics by jjray on 2008-05-05 20:46:17 as **
  • Crystal structure of the [lgr] repressor and a model for pairwise cooperative operator binding
    Nature, Vol. 452, No. 7190. (24 April 2008), pp. 1022-1025.
    by Steven Stayrook, Peera Jaru-Ampornpan, Jenny Ni, Ann Hochschild, Mitchell Lewis
    posted to transcription gene_regulation dna_binding cooperativity 3-dimensional_structure by jjray on 2008-04-23 23:37:03 as **
  • Nuclear Receptor-Enhanced Transcription Requires Motor- and LSD1-Dependent Gene Networking in Interchromatin Granules
    Cell, Vol. 132, No. 6. (21 March 2008), pp. 996-1010.
    by Esperanza Nunez, Young-Soo Kwon, Kasey R Hutt, Qidong Hu, Maria D Cardamone, Kenneth A Ohgi, Ivan Garcia-Bassets, David W Rose, Christopher K Glass, Michael G Rosenfeld, Xiang-Dong Fu
    posted to transcriptional_reprogramming transcription nucleus gene_network gene_expression chromatin by jjray on 2008-04-23 23:35:16 as ** along with 1 person dquest
  • Energy Constraints on the Evolution of Gene Expression
    Molecular Biology and Evolution, Vol. 22, No. 6. (June 2005), pp. 1365-1374.
    by Andreas Wagner
    posted to energy evolution gene_expression transcription translation by jjray on 2008-04-03 16:05:36 as ** along with 2 people jknabe Ema
  • Statistical modeling of transcription factor binding affinities predicts regulatory interactions.
    PLoS Comput Biol, Vol. 4, No. 3. (March 2008)
    by T Manke, HG Roider, M Vingron
    posted to dna_binding gene_regulation statistical_model transcription by jjray on 2008-03-31 21:37:11 as ** along with 2 people eskay maximilianh
  • Transcription and noise in negative feedback loops
    Biosystems, Vol. 91, No. 1. (January 2008), pp. 76-82.
    by JC Nacher, T Ochiai
    posted to feedback gene_regulation noise transcription by jjray on 2008-03-31 18:54:43 as **
  • Transcriptional control of noise in gene expression
    Proceedings of the National Academy of Sciences (19 March 2008), 0707904105.
    by Alvaro Sanchez, Jane Kondev
    posted to gene_expression noise stochastic transcription by jjray on 2008-03-20 15:18:58 as ** along with 6 people austin sbottani ddcttrl balabu margaritis lambda
  • Ab initio thermodynamic modeling of distal multisite transcription regulation.
    Nucleic Acids Res, Vol. 36, No. 3. (February 2008), pp. 726-731.
    by L Saiz, JM Vilar
    posted to transcriptional_regulation transcription thermodynamics mathematical_model biophysics bacteria by jjray on 2008-03-14 17:29:29 as read along with 1 person maximilianh
  • Transcriptional stochasticity in gene expression
    Journal of Theoretical Biology, Vol. 238, No. 2. (21 January 2006), pp. 348-367.
    by Tomasz Lipniacki, Pawel Paszek, Anna Marciniak-Czochra, Allan R Brasier, Marek Kimmel
    posted to mathematical_model stochastic transcription transcriptional_burst by jjray on 2008-02-27 22:03:27 as ** along with 4 people bayesian bh2 balabu cottrell
  • Control of rpoS transcription in Escherichia coli and Pseudomonas: why so different?
    Mol Microbiol, Vol. 49, No. 1. (July 2003), pp. 1-9.
    by V Venturi
    posted to bacteria bara e_coli sigma_factor transcription by jjray on 2008-02-18 17:53:09 as read
  • Specificity and robustness in transcription control networks.
    Proc Natl Acad Sci U S A, Vol. 99, No. 4. (19 February 2002), pp. 2072-2077.
    by AM Sengupta, M Djordjevic, BI Shraiman
    posted to mutational_entropy network robustness transcription by jjray on 2008-01-23 21:18:48 as ** along with 1 person jstajic
  • Gata2, Fli1, and Scl form a recursively wired gene-regulatory circuit during early hematopoietic development.
    Proc Natl Acad Sci U S A (25 October 2007)
    by John E E Pimanda, Katrin Ottersbach, Kathy Knezevic, Sarah Kinston, Wan Y I Y Chan, Nicola K K Wilson, Josette-Renée R Landry, Andrew D D Wood, Anja Kolb-Kokocinski, Anthony R R Green, David Tannahill, Georges Lacaud, Valerie Kouskoff, Berthold Göttgens
    posted to development gene_regulation stem_cell transcription triad by jjray on 2008-01-16 16:57:07 as read along with 2 people maximilianh idonaldson
  • Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations.
    Biophys J, Vol. 81, No. 6. (December 2001), pp. 3116-3136.
    by TB Kepler, TC Elston
    posted to biophysics mathematical_model stochastic transcription by jjray on 2007-12-10 17:12:45 as ** along with 2 people monod margaritis
  • Transcription of individual genes in eukaryotic cells occurs randomly and infrequently.
    Immunol Cell Biol, Vol. 72, No. 2. (April 1994), pp. 177-185.
    by IL Ross, CM Browne, DA Hume
    posted to gene_regulation macrophage stochastic transcription by jjray on 2007-10-28 19:51:52 as read
  • Negative autoregulation speeds the response times of transcription networks.
    J Mol Biol, Vol. 323, No. 5. (8 November 2002), pp. 785-793.
    by N Rosenfeld, MB Elowitz, U Alon
    posted to feedback mathematical_model network response_time synthetic_biology transcription by jjray on 2007-09-05 04:09:24 as read along with 3 people rklancer bayesian margaritis
  • How gene order is influenced by the biophysics of transcription regulation
    PNAS (20 August 2007), 0700672104.
    by Grigory Kolesov, Zeba Wunderlich, Olga N Laikova, Mikhail S Gelfand, Leonid A Mirny
    posted to biophysics gene_order gene_regulation mathematical_model transcription by jjray on 2007-08-21 15:24:30 as *** along with 6 people madhadron margaritis zwang Jporci maximilianh lambda
  • In vivo dynamics of RNA polymerase II transcription.
    Nat Struct Mol Biol (5 August 2007)
    by Xavier Darzacq, Yaron Shav-Tal, Valeria de Turris, Yehuda Brody, Shailesh M M Shenoy, Robert D D Phair, Robert H H Singer
    posted to gene_expression kinetics mrna single_cell transcription by jjray on 2007-08-13 21:20:53 as *** along with 5 people and 3 groups dpollard dchughes madhadron cwbrown margaritis EisenLab G4ID Genetics-of-Gambling
  • Diffusion of transcription factors can drastically enhance the noise in gene expression.
    Biophys J, Vol. 91, No. 12. (15 December 2006), pp. 4350-4367.
    by JS van Zon, MJ Morelli, S Tănase-Nicola, PR ten Wolde
    posted to gene_regulation gillespie_algorithm mathematical_model noise stochastic transcription by jjray on 2007-05-30 19:23:39 as *** along with 3 people ddcttrl balabu margaritis
  • Probing Transcription Factor Dynamics at the Single-Molecule Level in a Living Cell
    Science, Vol. 316, No. 5828. (25 May 2007), pp. 1191-1194.
    by Johan Elf, Gene-Wei Li, Sunney X Xie
    posted to biophysics e_coli gene_regulation transcription by jjray on 2007-05-25 19:47:51 as *** along with 7 people and 3 groups ras austin dpollard madhadron balabu nickluscombe samjlord EisenLab EBI-regulation moernerlab
  • The Proteasome Restricts Permissive Transcription at Tissue-Specific Gene Loci in Embryonic Stem Cells
    Cell, Vol. 127, No. 7. (29 December 2006), pp. 1375-1388.
    by Henrietta Szutorisz, Andrew Georgiou, Laszlo Tora, Niall Dillon
    posted to es_cell noise proteasome transcription by jjray on 2007-04-09 15:39:18 as read along with 2 people and 1 group brant tdmckee EisenLab
  • Transcriptional Pulsing of a Developmental Gene
    Current Biology, Vol. 16, No. 10. (23 May 2006), pp. 1018-1025.
    by Jonathan R Chubb, Tatjana Trcek, Shailesh M Shenoy, Robert H Singer
    posted to gene_regulation noise promoter transcription transcriptional_burst by jjray on 2007-02-27 00:49:11 as *** along with 3 people and 1 group emilyhare qfwills margaritis EisenLab
  • A Systems Approach to Measuring the Binding Energy Landscapes of Transcription Factors
    Science, Vol. 315, No. 5809. (12 January 2007), pp. 233-237.
    by Sebastian J Maerkl, Stephen R Quake
    posted to transcription systems_approach microfluidics gene_regulation biophysics by jjray on 2007-01-12 19:57:23 as *** along with 8 people and 2 groups brant dpollard emilyhare adepace aswin skoch3 blobbybirdman emptyhb EisenLab Koch_Lab
  • Variability and memory of protein levels in human cells
    Nature (19 November 2006)
    by Alex Sigal, Ron Milo, Ariel Cohen, Naama Geva-Zatorsky, Yael Klein, Yuvalal Liron, Nitzan Rosenfeld, Tamar Danon, Natalie Perzov, Uri Alon
    posted to transcription systems_approach stochastic noise gene_regulation by jjray on 2007-01-10 19:17:14 as *** along with 4 people and 3 groups icases marcius margaritis cjeans BioinfoCIPF SGU-CIPF TNT
  • Promoter Crosstalk Effects on Gene Expression
    Journal of Molecular Biology, Vol. 365, No. 4. (26 January 2007), pp. 911-920.
    by Mathias Hampf, Manfred Gossen
    posted to crosstalk gene_regulation noise promoter systems_approach transcription by jjray on 2007-01-04 16:57:06 as *** along with 1 person margaritis
  • Stochastic mRNA Synthesis in Mammalian Cells
    PLoS Biology, Vol. 4, No. 10. (1 October 2006), e309.
    by Arjun Raj, Charles S Peskin, Daniel Tranchina, Diana Y Vargas, Sanjay Tyagi
    posted to gene_regulation mammalian mathematical_model mrna noise stochastic transcription transcriptional_burst by jjray on 2006-09-12 21:07:11 as read along with 7 people nirfriedman madhadron balabu cottrell qfwills johncumbers margaritis
  • Autocrine/paracrine IFN-alphabeta mediates the lipopolysaccharide-induced activation of transcription factor Stat1alpha in mouse macrophages: pivotal role of Stat1alpha in induction of the inducible nitric oxide synthase gene.
    J Immunol, Vol. 161, No. 9. (1 November 1998), pp. 4803-4810.
    by JJ Gao, MB Filla, MJ Fultz, SN Vogel, SW Russell, WJ Murphy
    posted to autocrine_paracrine biochemistry cytokine gene_regulation ifn-gamma immune_activation murine_macrophage network_motifs nitric_oxide stat1 transcription by jjray on 2005-09-16 21:19:31 as read
  • Subunit structure of regulator proteins influences the design of gene circuitry: analysis of perfectly coupled and completely uncoupled circuits.
    J Mol Biol, Vol. 248, No. 4. (12 May 1995), pp. 739-755.
    by WS Hlavacek, MA Savageau
    posted to biochemical_systems_theory evolution feedback gene_regulation mathematical_model mathematically_controlled_comparison network network_motifs robustness systems_approach temporal_response transcription by jjray on 2005-08-31 20:38:54 as read
  • Rules for coupled expression of regulator and effector genes in inducible circuits.
    J Mol Biol, Vol. 255, No. 1. (12 January 1996), pp. 121-139.
    by WS Hlavacek, MA Savageau
    posted to biochemical_systems_theory evolution feedback gene_regulation mathematical_model mathematically_controlled_comparison network network_motifs robustness systems_approach temporal_response transcription by jjray on 2005-08-31 20:35:12 as read
  • Completely uncoupled and perfectly coupled gene expression in repressible systems.
    J Mol Biol, Vol. 266, No. 3. (28 February 1997), pp. 538-558.
    by WS Hlavacek, MA Savageau
    posted to biochemical_systems_theory evolution feedback gene_regulation mathematical_model mathematically_controlled_comparison network network_motifs systems_approach transcription by jjray on 2005-08-31 20:33:45 as read
  • Demand theory of gene regulation. II. Quantitative application to the lactose and maltose operons of Escherichia coli.
    Genetics, Vol. 149, No. 4. (August 1998), pp. 1677-1691.
    by MA Savageau
    posted to demand_theory e_coli evolution gene_regulation mathematical_model systems_approach transcription by jjray on 2005-08-31 20:31:36 as read along with 1 person i41m
  • Demand theory of gene regulation. I. Quantitative development of the theory.
    Genetics, Vol. 149, No. 4. (August 1998), pp. 1665-1676.
    by MA Savageau
    posted to demand_theory e_coli evolution gene_regulation mathematical_model transcription by jjray on 2005-08-31 20:30:14 as read along with 1 person i41m
  • Posttranscriptional inhibition of gene expression by Mycobacterium tuberculosis offsets transcriptional synergism with IFN-gamma and posttranscriptional up-regulation by IFN-gamma.
    J Immunol, Vol. 172, No. 5. (1 March 2004), pp. 2935-2943.
    by Y Qiao, S Prabhakar, A Canova, Y Hoshino, M Weiden, R Pine
    posted to gene_regulation human_monocyte ifn-gamma immune_activation irf-1 mycobacterium_tuberculosis synergistic_signals transcription by jjray on 2005-08-30 21:56:40 as read
  • Network motifs in the transcriptional regulation network of Escherichia coli
    Nat Genet, Vol. 31, No. 1. (May 2002), pp. 64-68.
    by Shai S Shen-Orr, Ron Milo, Shmoolik Mangan, Uri Alon
    posted to dense_overlapping_regulon e_coli feedforward network network_motifs systems_approach transcription by jjray on 2005-08-30 19:25:14 as read along with 11 people and 1 group Borelli jstajic ssb nickluscombe gurkanbebek jtaylor jayster4 karfunkel blobbybirdman zibuyu maralena EBI-regulation
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