注册 | 登录 | FAQ      [?] 
Recent | Unread | Search | Authors | Tags | Export

jjray's mathematical_model [113 articles]

当前文献位于 jjray's 文献库 标签分类为 mathematical_model. You can also see everyone's mathematical_model.
  • Noise in genetic and neural networks.
    Chaos, Vol. 16, No. 2. (June 2006)
    by PS Swain, A Longtin
    posted to noise neural_network mathematical_model gene_network by jjray on 2008-07-01 18:09:49 as ** along with 3 people and 2 groups bayesian cudmore suizan APprecision 801
  • Intrinsic and extrinsic contributions to stochasticity in gene expression.
    Proc Natl Acad Sci U S A, Vol. 99, No. 20. (1 October 2002), pp. 12795-12800.
    by PS Swain, MB Elowitz, ED Siggia
    posted to stochastic noise mathematical_model gene_regulation gene_expression by jjray on 2008-07-01 18:08:59 as ** along with 5 people JKelly555 madhadron balabu timflutre margaritis
  • Intrinsic noise in gene regulatory networks.
    Proc Natl Acad Sci U S A, Vol. 98, No. 15. (17 July 2001), pp. 8614-8619.
    by M Thattai, A van Oudenaarden
    posted to noise network mathematical_model gene_regulation by jjray on 2008-07-01 18:07:54 as ** along with 3 people bayesian timflutre margaritis
  • Shaping robust system through evolution
    Chaos: An Interdisciplinary Journal of Nonlinear Science, Vol. 18, No. 2. (2008)
    by Kunihiko Kaneko
    posted to robustness noise network mathematical_model evolution artificial_evolution by jjray on 2008-07-01 00:06:37 as **
  • A method of estimating the noise level in a chaotic time series
    Chaos: An Interdisciplinary Journal of Nonlinear Science, Vol. 18, No. 2. (2008)
    by AW Jayawardena, Pengcheng Xu, WK Li
    posted to time_series noise mathematical_model chaos by jjray on 2008-06-30 23:59:02 as **
  • Universal occurrence of the phase-flip bifurcation in time-delay coupled systems
    Chaos: An Interdisciplinary Journal of Nonlinear Science, Vol. 18, No. 2. (2008)
    by Awadhesh Prasad, Syamal K Dana, Rajat Karnatak, Jürgen Kurths, Bernd Blasius, Ramakrishna Ramaswamy
    posted to mathematical_model ecology dynamical_system delay chaos bifurcation by jjray on 2008-06-30 23:55:49 as **
  • Input reconstruction of chaos sensors
    Chaos: An Interdisciplinary Journal of Nonlinear Science, Vol. 18, No. 2. (2008)
    by Dongchuan Yu, Fang Liu, Pik Y Lai
    posted to signaling robustness mathematical_model chaos by jjray on 2008-06-30 23:49:25 as **
  • The mean and noise of stochastic gene transcription
    Journal of Theoretical Biology, Vol. 253, No. 2. (21 July 2008), pp. 271-280.
    by Moxun Tang
    posted to transcription stochastic noise mathematical_model gene_expression by jjray on 2008-06-30 16:19:47 as ** along with 1 person balicea
  • Uses and abuses of mathematics in biology.
    Science, Vol. 303, No. 5659. (6 February 2004), pp. 790-793.
    by RM May
    posted to opinion mathematical_model mathematical_biology by jjray on 2008-06-26 17:30:35 as ** along with 3 people tral mhucka bayesian
  • Efficient attenuation of stochasticity in gene expression through post-transcriptional control.
    J Mol Biol, Vol. 344, No. 4. (3 December 2004), pp. 965-976.
    by PS Swain
    posted to stochastic noise mathematical_model gene_expression by jjray on 2008-06-25 15:27:57 as ** along with 3 people and 1 group cudmore Jporci kfm9876 APprecision
  • Dynamics and Design Principles of a Basic Regulatory Architecture Controlling Metabolic Pathways
    PLoS Biology, Vol. 6, No. 6. (1 June 2008), e146.
    by Chen-Shan Chin, Victor Chubukov, Emmitt R Jolly, Joe Derisi, Hao Li
    posted to saccharomyces_cerevisiae metabolism mathematical_model feedback design_principles by jjray on 2008-06-24 19:56:11 as ** along with 4 people zwang marck michaelbarton djkt
  • Positive feedback in cellular control systems.
    BioEssays : news and reviews in molecular, cellular and developmental biology, Vol. 30, No. 6. (June 2008), pp. 542-555.
    by AY Mitrophanov, EA Groisman
    posted to two-component_system review positive_feedback mathematical_model feedback by jjray on 2008-06-23 22:52:24 as read
  • Rate constants rather than biochemical mechanism determine behaviour of genetic clocks
    Journal of The Royal Society Interface
    by Emery Conrad, Avraham E Mayo, Alexander J Ninfa, Daniel B Forger
    posted to parameter oscillation mathematical_model kinetics gene_regulation gene_network feedback by jjray on 2008-06-23 20:00:00 as **
  • Symbolic dynamics of biological feedback networks
    (2 Jun 2008)
    by Simone Pigolotti, Sandeep Krishna, Mogens H Jensen
    posted to symbolic_dynamics mathematical_model feedback dynamics by jjray on 2008-06-16 20:16:08 as ** along with 1 person ansobol
  • Nucleosome Retention and the Stochastic Nature of Promoter Chromatin Remodeling for Transcription
    Cell, Vol. 133, No. 4. (16 May 2008), pp. 716-726.
    by Hinrich Boeger, Joachim Griesenbeck, Roger D Kornberg
    posted to transcription stochastic nucleosome mathematical_model gillespie_algorithm gene_expression eukaryote chromatin by jjray on 2008-05-16 20:34:56 as **
  • Ultrasensitive gene regulation by positive feedback loops in nucleosome modification
    Mol Syst Biol, Vol. 4 (15 April 2008)
    by Kim Sneppen, Mille A Micheelsen, Ian B Dodd
    posted to transcriptional_regulation sensitivity promoter positive_feedback mathematical_model feedback eukaryote bistability by jjray on 2008-05-06 22:22:22 as **
  • Signaling cascades as cellular devices for spatial computations
    Journal of Mathematical Biology
    by Jörg Stelling, Boris Kholodenko
    posted to spatial signaling_cascade signaling network mathematical_model by jjray on 2008-05-05 20:51:13 as ** along with 2 people madhadron michaelfsp
  • A Kinetic Model of Transcription Initiation by RNA Polymerase
    Journal of Molecular Biology, Vol. 378, No. 3. (2 May 2008), pp. 520-529.
    by Xiao-Chuan Xue, Fei Liu, Zhong-Can Ou-Yang
    posted to transcription promoter mathematical_model gibbs energy biophysics by jjray on 2008-05-05 20:46:17 as **
  • Intrinsic noise, dissipation cost, and robustness of cellular networks: The underlying energy landscape of MAPK signal transduction
    Proceedings of the National Academy of Sciences (17 April 2008), 0708708105.
    by Saul Lapidus, Bo Han, Jin Wang
    posted to mathematical_model network noise robustness signaling statistical_method stochastic by jjray on 2008-04-18 19:37:09 as ** along with 4 people cactus ddcttrl margaritis biehl
  • Hysteretic and graded responses in bacterial two-component signal transduction.
    Molecular microbiology (8 April 2008)
    by Oleg A Igoshin, Rui Alves, Michael A Savageau
    posted to bacteria bistability mathematical_model two-component_system by jjray on 2008-04-16 19:32:03 as read
  • Comparison of classical and autogenous systems of regulation in inducible operons
    Nature, Vol. 252, No. 5484. (13 December 1974), pp. 546-549.
    by Michael A Savageau
    posted to biochemical_systems_theory feedback mathematical_model network response_time by jjray on 2008-04-15 17:26:39 as read along with 1 person marcio
  • Universally Sloppy Parameter Sensitivities in Systems Biology Models
    PLoS Computational Biology, Vol. 3, No. 10. (1 October 2007), e189.
    by Ryan N Gutenkunst, Joshua J Waterfall, Fergal P Casey, Kevin S Brown, Christopher R Myers, James P Sethna
    posted to data_fitting mathematical_model parameter sensitivity_analysis by jjray on 2008-03-31 21:03:05 as ** along with 3 people aheilbut chad_davis csgillespie
  • On the Relationship between Genomic Regulatory Element Organization and Gene Regulatory Dynamics
    Journal of Theoretical Biology, Vol. 195, No. 2. (21 November 1998), pp. 167-186.
    by Denise M Wolf, Frank H Eeckman
    posted to gene_regulation mathematical_model statistical_mechanics thermodynamics by jjray on 2008-03-31 18:33:46 as **
  • Systemic properties of ensembles of metabolic networks: application of graphical and statistical methods to simple unbranched pathways.
    Bioinformatics, Vol. 16, No. 6. (June 2000), pp. 534-547.
    by R Alves, MA Savageau
    posted to biochemical_systems_theory mathematically_controlled_comparison mathematical_model metabolism statistical_method by jjray on 2008-03-25 15:47:54 as read
  • Positive feedback and noise activate the stringent response regulator rel in mycobacteria.
    PLoS ONE, Vol. 3, No. 3. (2008)
    by K Sureka, B Ghosh, A Dasgupta, J Basu, M Kundu, I Bose
    posted to feedback hysteresis mathematical_model mycobacteria noise by jjray on 2008-03-16 16:53:11 as ** along with 1 person madhadron
  • Ab initio thermodynamic modeling of distal multisite transcription regulation.
    Nucleic Acids Res, Vol. 36, No. 3. (February 2008), pp. 726-731.
    by L Saiz, JM Vilar
    posted to transcriptional_regulation transcription thermodynamics mathematical_model biophysics bacteria by jjray on 2008-03-14 17:29:29 as read along with 1 person maximilianh
  • Transcriptional stochasticity in gene expression
    Journal of Theoretical Biology, Vol. 238, No. 2. (21 January 2006), pp. 348-367.
    by Tomasz Lipniacki, Pawel Paszek, Anna Marciniak-Czochra, Allan R Brasier, Marek Kimmel
    posted to mathematical_model stochastic transcription transcriptional_burst by jjray on 2008-02-27 22:03:27 as ** along with 4 people bayesian bh2 balabu cottrell
  • Differences in reactivation of tuberculosis induced from anti-TNF treatments are based on bioavailability in granulomatous tissue.
    PLoS Comput Biol, Vol. 3, No. 10. (October 2007), pp. 1909-1924.
    by S Marino, D Sud, H Plessner, PL Lin, J Chan, JL Flynn, DE Kirschner
    posted to granuloma immunology mathematical_model mycobacterium_tuberculosis by jjray on 2008-02-26 20:54:13 as read
  • Substrate competition as a source of ultrasensitivity in the inactivation of wee1.
    Cell, Vol. 128, No. 6. (23 March 2007), pp. 1133-1145.
    by SY Kim, JE Ferrell
    posted to biochemistry mathematical_model signaling substrate_competition zero-order_ultrasensitivity by jjray on 2008-02-18 16:55:50 as ** along with 1 person and 1 group arne dIEMoSIRIS
  • Robustness and the cycle of phosphorylation and dephosphorylation in a two-component regulatory system
    Proceedings of the National Academy of Sciences, Vol. 100, No. 2. (21 January 2003), pp. 691-696.
    by Eric Batchelor, Mark Goulian
    posted to bacteria biochemistry mathematical_model robustness two-component_system by jjray on 2008-02-13 23:17:21 as read
  • Comparative analysis of prototype two-component systems with either bifunctional or monofunctional sensors: differences in molecular structure and physiological function.
    Mol Microbiol, Vol. 48, No. 1. (April 2003), pp. 25-51.
    by R Alves, MA Savageau
    posted to bacteria biochemical_systems_theory mathematically_controlled_comparison mathematical_model two-component_system by jjray on 2008-02-11 17:21:56 as read
  • Evolvability is a selectable trait.
    Proc Natl Acad Sci U S A, Vol. 101, No. 32. (10 August 2004), pp. 11531-11536.
    by DJ Earl, MW Deem
    posted to evolution evolvability mathematical_model by jjray on 2008-02-07 19:21:02 as ** along with 4 people and 1 group tomhebbron eldan Retchless adepace EisenLab
  • Potential in stochastic differential equations: novel construction
    Journal of Physics A: Mathematical and General, Vol. 37, No. 3. (2004), pp. L25-L30.
    by P Ao
    posted to mathematical_model potential stochastic by jjray on 2008-01-17 17:55:51 as **
  • Chemotaxis in Escherichia coli: A Molecular Model for Robust Precise Adaptation
    PLoS Computational Biology, Vol. 4, No. 1. (1 January 2008), e1.
    by Clinton H Hansen, Robert G Endres, Ned S Wingreen
    posted to biophysics chemotaxis mathematical_model noise two-component_system by jjray on 2008-01-17 16:49:01 as ** along with 1 person vladimirov
  • Molecular level stochastic model for competence cycles in Bacillus subtilis
    Proceedings of the National Academy of Sciences, Vol. 104, No. 45. (6 November 2007), pp. 17582-17587.
    by Daniel Schultz, Ben, Jose N Onuchic, Peter G Wolynes
    posted to bacillus_subtilis competence mathematical_model stochastic by jjray on 2008-01-15 20:00:36 as ** along with 3 people balabu lshaw margaritis
  • Cost–benefit theory and optimal design of gene regulation functions
    Phys. Biol., Vol. 4, No. 4. (December 2007), 229.
    by Tomer Kalisky, Erez Dekel, Uri Alon
    posted to cost-benefit gene_regulation mathematical_model theory by jjray on 2008-01-15 19:40:58 as ** along with 2 people and 1 group dbikard Pascalichouchou SynBioSys
  • Ultrasensitivity in biochemical systems controlled by covalent modification. Interplay between zero-order and multistep effects.
    J Biol Chem, Vol. 259, No. 23. (10 December 1984), pp. 14441-14447.
    by A Goldbeter, DE Koshland
    posted to biochemistry mathematical_model sensitivity_analysis zero-order_ultrasensitivity by jjray on 2008-01-15 18:16:06 as **
  • An amplified sensitivity arising from covalent modification in biological systems.
    Proc Natl Acad Sci U S A, Vol. 78, No. 11. (November 1981), pp. 6840-6844.
    by A Goldbeter, DE Koshland
    posted to biochemistry mathematical_model sensitivity_analysis signaling by jjray on 2008-01-11 18:23:22 as read along with 4 people and 1 group rklancer monod jbchang lenov compneur
  • Stochastic approaches for modelling in vivo reactions
    Computational Biology and Chemistry, Vol. 28, No. 3. (July 2004), pp. 165-178.
    by TE Turner, S Schnell, K Burrage
    posted to gillespie_algorithm mathematical_model review stochastic tau_leap by jjray on 2007-12-13 15:50:19 as ** along with 5 people and 3 groups brain balabu schnell roland_ewald insectopalo IU_Informatics_CX dIEMoSIRIS MoSi-Rostock
  • Signalling network with a bistable hysteretic switch controls developmental activation of the F transcription factor in Bacillus subtilis
    Molecular Microbiology, Vol. 61, No. 1. (July 2006), pp. 165-184.
    by Oleg A Igoshin, Chester W Price, Michael A Savageau
    posted to bacillus_subtilis hysteresis mathematically_controlled_comparison mathematical_model sigma_factor signaling by jjray on 2007-12-11 18:51:23 as read
  • Distinctive Topologies of Partner-switching Signaling Networks Correlate with their Physiological Roles.
    J Mol Biol, Vol. 369, No. 5. (22 June 2007), pp. 1333-1352.
    by OA Igoshin, MS Brody, CW Price, MA Savageau
    posted to bacillus_subtilis mathematically_controlled_comparison mathematical_model sigma_factor signaling transcriptional_reprogramming by jjray on 2007-12-11 18:50:35 as read along with 1 person aswin
  • Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations.
    Biophys J, Vol. 81, No. 6. (December 2001), pp. 3116-3136.
    by TB Kepler, TC Elston
    posted to biophysics mathematical_model stochastic transcription by jjray on 2007-12-10 17:12:45 as ** along with 2 people monod margaritis
  • Stochastic cooperativity in non-linear dynamics of genetic regulatory networks
    Mathematical Biosciences, Vol. 210, No. 1. (November 2007), pp. 121-142.
    by Simon Rosenfeld
    posted to biochemical_systems_theory biophysics gene_regulation mathematical_model s-system stochastic by jjray on 2007-10-26 22:17:00 as **
  • Living with noisy genes: how cells function reliably with inherent variability in gene expression.
    Annu Rev Biophys Biomol Struct, Vol. 36 (2007), pp. 413-434.
    by N Maheshri, EK O'Shea
    posted to gene_expression mathematical_model noise stochastic transcriptional_burst by jjray on 2007-10-19 02:41:38 as ** along with 2 people madhadron margaritis
  • Towards a theory of biological robustness
    Mol Syst Biol, Vol. 3 (2007)
    by Hiroaki Kitano
    posted to design_principles mathematical_model review robustness theory by jjray on 2007-10-12 15:32:45 as read along with 8 people and 1 group jf76 dullhunk margaritis massivemayhem fishtank bootsy sobolevnrm Ema baker-group
  • Extending the method of mathematically controlled comparison to include numerical comparisons.
    Bioinformatics, Vol. 16, No. 9. (September 2000), pp. 786-798.
    by R Alves, MA Savageau
    posted to biochemical_systems_theory mathematically_controlled_comparison mathematical_model statistical_method statistical_sensitivity by jjray on 2007-09-09 19:45:16 as read
  • Negative autoregulation speeds the response times of transcription networks.
    J Mol Biol, Vol. 323, No. 5. (8 November 2002), pp. 785-793.
    by N Rosenfeld, MB Elowitz, U Alon
    posted to feedback mathematical_model network response_time synthetic_biology transcription by jjray on 2007-09-05 04:09:24 as read along with 3 people rklancer bayesian margaritis
  • Identifying control mechanisms of granuloma formation during M. tuberculosis infection using an agent-based model.
    J Theor Biol, Vol. 231, No. 3. (7 December 2004), pp. 357-376.
    by JL Segovia-Juarez, S Ganguli, D Kirschner
    posted to agent_based granuloma mathematical_model mycobacterium_tuberculosis by jjray on 2007-09-02 21:32:14 as read along with 1 person mhucka
  • How gene order is influenced by the biophysics of transcription regulation
    PNAS (20 August 2007), 0700672104.
    by Grigory Kolesov, Zeba Wunderlich, Olga N Laikova, Mikhail S Gelfand, Leonid A Mirny
    posted to biophysics gene_order gene_regulation mathematical_model transcription by jjray on 2007-08-21 15:24:30 as *** along with 6 people madhadron margaritis zwang Jporci maximilianh lambda
  • Space as the final frontier in stochastic simulations of biological systems
    FEBS Letters, Vol. 579, No. 8. (21 March 2005), pp. 1789-1794.
    by Caroline Lemerle, Barbara Di Ventura, Luis Serrano
    posted to mathematical_model simulation spatial stochastic by jjray on 2007-08-12 19:39:50 as *** along with 1 person arne
    • ◇温馨提示◇本页的引用地址为： http://www.citeulike.org/user/jjray/tag/mathematical_model

    Result page: 1 2 3 Next RIS BibTeX RSS